Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20echinophila_20[genbank_20GCA_5F000812885.1_202014-12- 31] 7,345 sequences; 40,250,382 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq4887 288 1e-72 seq4745 104 3e-17 >seq4887 Length=16554 Score = 288 bits (318), Expect = 1e-72 Identities = 1144/1778 (64%), Gaps = 33/1778 (2%) Strand=Plus/Plus Query 75212 CCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGTC 75271 ||||| | ||| ||||||| || || | || || ||||| || || ||||| || | Sbjct 10247 CCACAACAAATGATCATGCGTGTTGCCGTTGGTATTCACGGTGATGATATTGAAAGTGCC 10306 Query 75272 TTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAACCCTCTT 75330 | || |||||| || ||||||| | | || || | ||||| | ||||| ||||| Sbjct 10307 ATCGAAACATACAACTTGATGTCCAACAAATACTTT-ACACACGCTTCTCCAACACTCTT 10365 Query 75331 CAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 75390 | ||| ||||| ||| | ||| | || ||||||||||| | | |||||||| Sbjct 10366 CTCTGCGGGTACTCCACAGGCTCAGCTTTCATCATGCTTCCTTATTGATATGAAGGAGGA 10425 Query 75391 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 75450 || | |||||||||| ||| | | | ||||| || |||||| ||||| Sbjct 10426 TAGTATTGATGGTATCTATGATACTTTGAAGATTTGTGCTATGATTTCAAAGAACGCTGG 10485 Query 75451 GGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAA 75510 |||||||| | ||||||| | | || | | | ||| || ||||| Sbjct 10486 TGGTATTGGTCTCAACATCCACAGAATCCGTGCTACTGGTGCCTACATTGCAGGCACAAA 10545 Query 75511 TGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGT 75570 ||| | || | ||||| |||| |||||||| || || ||| ||| || | ||||| Sbjct 10546 CGGTAACTCTAACGGTATCGTTCCTATGCTTCGAGTTTTCAACAACACCGCTAGATATGT 10605 Query 75571 AAATCAAGCGGGGCGTCGCAAGGG-----GTCCATC-GCGGTCTACTTGGAACCATGGCA 75624 | |||| || | |||| | || ||| || || ||| | ||||||||||| Sbjct 10606 CGACCAAGGTGG---TAACAAGCGCCCTGGTGCATTTGCCGTTTACCTTGAACCATGGCA 10662 Query 75625 TGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTCGGTG 75684 ||| ||| || | |||||| | || | ||| ||||| || | || || | | | Sbjct 10663 TGCGGATGTCTTTGAGTTCTTGGACCTCCGAAAGAACCACGGCAAAGAGGAAGTTAGAGC 10722 Query 75685 TAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAGGG 75744 | |||||||| | |||| ||||||||||| || ||||||||||| ||||| || Sbjct 10723 ACGCGATCTCTTCTATGCCCTCTGGATTCCAGATCTCTTCATGAAGCGTGTTGAAAAGAA 10782 Query 75745 TGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACGCGGTGGGTGA 75804 || | ||| | || | || || || | ||||| | | || | ||||| Sbjct 10783 CGGAGACTGGACACTCATGTGCCCTAACGAATGTCCAGGCTTGGCTGATGTCTATGGTGA 10842 Query 75805 GGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGG-AGGGTAGAGCCAATGCGACTGTAC 75863 || || || || ||||| | || || ||| | |||| || | ||| | | Sbjct 10843 TGAATTCGAGGCTCTCTATGAAGGTTACGA-GAGACAAGGTAAAGGTCGTAAGACCAT-C 10900 Query 75864 CAGCCGCCGATG-TTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCATAT 75922 || | | | | ||||| | | || || | | ||||| |||||||||| || | Sbjct 10901 AAGGCTCAAAAGCTTTGGTATTCCATCCTTGAGGCCCAGACTGAGACTGGAAACCCTTTC 10960 Query 75923 ATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAG 75982 ||||||||||| |||||||| ||||| ||||||||||||||||| | || |||||| Sbjct 10961 ATGCTTTACAAAGATGCTTGCAACAAAAAGAGTAACCAAAAGAACCTCGGCACAATCCGT 11020 Query 75983 AGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGTTTGC 76042 ||||| || | ||||| ||||| | || ||| | | ||||||| ||| || Sbjct 11021 AGCTCCAACTTGTGCACAGAAATCGTCGAATACTCTGCACCGGATGAGGTTGCTTGCTGT 11080 Query 76043 AATTTGGCATCAATCGCCCTTCCAAAGTATGTCAA---TGAAGAGACTCGCACTTTTGAT 76099 || ||||| || || || || |||| | |||||| | ||| | |||| |||| Sbjct 11081 AACTTGGCTTCTATTGCTCTCCCAACCTTTGTCAACATGGCTGAG---GGAACTTATGAT 11137 Query 76100 TATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACCGAGTCATTGAC 76159 | |||| |||||||| || | ||||| || ||| | ||| | |||||| Sbjct 11138 TTCCAAAAGCTTCATGAGGTCGTTCAAGTTGTTGTCAGAAACTTGAACAAGATTATTGAC 11197 Query 76160 AGAAATTTTTATCCCGT-TGAGACTGCGCGAAAGTCTAATATGCGACACAGACCTATTGG 76218 | || | ||||| || ||| || ||||| ||| | || ||| ||||||||| Sbjct 11198 ATCAACTACTATCCTGTCCCAGA-AGCTAGAAAGAGTAACTTCCGTCACCGACCTATTGC 11256 Query 76219 TTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGCTACGCATTTGATTCAGA 76278 | | |||||||| ||||| || |||| || | ||| | |||| |||||| Sbjct 11257 TGTTGGTGTTCAGGGTCTTGCTGATGCCTTCCTGGCTCTCCGTTTGCCATTCGATTCACC 11316 Query 76279 TGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCACGCATCCCTGGAGGC 76338 ||| ||||| | | || | || || || ||||| || |||| || || | Sbjct 11317 TGAGGCCAAACATCTTAACATCCAGATTTTCGAGACCATCTACCACGGTGCCTTGACTTC 11376 Query 76339 GAGTTGTGA-ATTGGCTGAAGCCCAAGGTTCC-TATGAGACATTTGAGGGTTCTCCCGCG 76396 | | | | |||| | ||| || || |||||||| | || |||||||| | Sbjct 11377 GTCTGTTCAGATTGCC--AAGGAGTTGGGCCCATATGAGACCTACGAAGGTTCTCCAGTT 11434 Query 76397 TCCCAAGGGGTGCTTCAGTTTGATATGTGGGAAGGTGAAACCA-AGCTCAACTACGACTG 76455 ||| | || | ||||| | ||||||||||| | | | | || || || || || Sbjct 11435 TCCAAGGGTGAACTTCAATATGATATGTGGGGTGTTACTCCTACAGATC-TCTGGGATTG 11493 Query 76456 GGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCACC 76515 |||| |||||| || |||||| | | ||| |||| |||||| | | | || || Sbjct 11494 GGATAGCCTCAAGCAATCTATCAAGCAACATGGTATTCGCAACAGTTTGCTTGTTGCTCC 11553 Query 76516 AATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCATACAC 76575 |||||||| ||| || | ||||| | ||| || ||||| || || |||||||| Sbjct 11554 TATGCCAACTGCCAGTACATCTCAAATTCTCGGTTTCAACGAATGTTTCGAGCCATACAC 11613 Query 76576 AACAAACATCTACCTGAGAAGAACCCTCGCAGGTGAGTTTGTCATTGTCAACAAGCACCT 76635 | |||||||| | | || || || ||||| |||||||| || Sbjct 11614 TTCCAACATCTATTCCCGTCGTGTGCTGGCCGGAGAGTTCCAAGTTGTCAACCCATGGCT 11673 Query 76636 CGTCAATGACCTCAAGAAGATTGGTCTCTGGTCCAAGGATATGAAGGATCTCATGGTGAA 76695 |||| || | | || || || ||||| | | |||||| | | ||| | Sbjct 11674 TCTCAAGGATTTGGTCGACATGGGACTTTGGTCTGACAACATGAAGAACCGCATCATCGC 11733 Query 76696 AGCGGGTGGTTCCATTCAAAATATCTCAGATATCCCAGATGATATCAAGAATCTCTACCG 76755 | ||||| || |||||||| || | | ||||||| ||| ||||| ||||||| Sbjct 11734 TGACGGTGGATCTATTCAAAACATTCCCAACATCCCAGCTGAACTCAAGGCTCTCTACAA 11793 Query 76756 CACAGTGTGGGAAA--TCAAGATGAAAGATGTCATTGACATGGCCGCAGATCGTGGTCGC 76813 || || ||||||| || | |||| | | || | ||||||||||| |||||| Sbjct 11794 GACTGTTTGGGAAATCTCTCAACGAAACA--TTGTTCAGATGGCCGCAGACCGTGGTGCT 11851 Query 76814 TTCATTGATCAAAGTCAAAGTATGAATCTATTCATGGAAAGTCCAACGATGTCCAAGCTC 76873 ||||| |||||| |||| ||||| | |||| | || || ||| |||| || Sbjct 11852 TTCATCGATCAATCTCAATCAATGAACATCCACATGAAGGACCCTACAATGGGCAAGATC 11911 Query 76874 TCTTCTATGCATATGTACGCGTGGAAACAGGGGCTCAAAACCGGAATGTACTATCTCCGA 76933 |||| |||||| | | |||||| || ||||| || ||||||||||||||||| Sbjct 11912 ACTTCCATGCATTTTGCTGGATGGAAATTAGGTCTCAAGACTGGAATGTACTATCTCCGT 11971 Query 76934 TCAAAGGCGAAAGCCCGACCAATTCAGTTCAGCCTTGA 76971 | | ||| || ||||||||| |||| | |||| Sbjct 11972 ACTATGGCTGCTTCCGCACCAATTCAATTCACCGTTGA 12009 >seq4745 Length=15183 Score = 104 bits (114), Expect = 3e-17 Identities = 336/516 (65%), Gaps = 8/516 (2%) Strand=Plus/Minus Query 65005 ACTGTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGACACAAAGTCT 65064 || || || || ||| |||||||||| | ||||| | | |||| |||| ||| Sbjct 9208 ACAGTTCCTTGCATTAAGAAGAAGGCCGACTGGGCTGTTAGATGGATTGAGGATAAGAA- 9150 Query 65065 CGCT-CCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGG 65123 | || |||| || | || || | || || || || || |||||||||||| || Sbjct 9149 CTCTACCTTTGCTCAACGTCTCGTCGCATTCGCTGCCGTTGAAGGTATCTTCTTCAGTGG 9090 Query 65124 GTCATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTC 65183 || ||| | |||||| ||| | |||||||| || | ||| | || || ||| || Sbjct 9089 TTCCTTCGCCTCTATTTTCTGGCTCAAGAAGCGTGGCTTGATGGCTGGTCTCACCTTTTC 9030 Query 65184 AAATGAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCCGTGGAGCTCTTCAA 65243 || || || || ||||| || |||||||| || || || ||| ||||||| Sbjct 9029 CAACGAGCTCATCTCCCGTGACGAGGGTCTTCATACCGACTTCGCCTGCCTGCTCTTCTC 8970 Query 65244 GACTTTGCGTAATAGACCCACTACCGAAACTATCCACGCCATCGTGAAAGAGGCGGTTGA 65303 | ||| || | || | | || | | || | | | | |||||| || | Sbjct 8969 GCACTTGAAGCATCGCCCAAGCAAACAAGCCGTTCAGGATGTTATTACAGAGGCTGTCCA 8910 Query 65304 GATTGAGAAAGGGTTCATCTTGGACGCACTCCCATGTAATCTCATCGGTATGAACTCTGA 65363 ||||||| ||| ||| | ||| || || |||||| |||| | || |||||||| || Sbjct 8909 GATTGAGCAAGAATTCTTGACGGAAGCTCTTCCATGTGCTCTCCTTGGCATGAACTCGGA 8850 Query 65364 GAAGATGTCCGAGTACATTGAGTATGTGTCGGATCGTCTCCTCAAACAAGTTGGGG-TGC 65422 |||| | |||||||||| || | || ||||| || |||| || Sbjct 8849 TTTGATGAAGCAATACATTGAGTTCGTCGCAGACCGTCTTCTTGTTGCTCTTGGTAATGA 8790 Query 65423 CACCCATTTGGAACGCGAAG--AATCCATTTGACTTTATGGAAAACATTAGCCTTGATGG 65480 | || | || || |||||||| ||||| |||||||||||| || | || Sbjct 8789 GAAGGTTT---ACCGATCAGCCAATCCATTCGACTTCATGGAAAACATTTCTCTCGCAGG 8733 Query 65481 GAAGACCAACTTCTTTGAGAAGCGAGTTGGGGACTA 65516 |||||||||||||| |||||||||||||| ||||| Sbjct 8732 CAAGACCAACTTCTTCGAGAAGCGAGTTGGCGACTA 8697 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596514827453600