Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rutstroemia_20echinophila_20[genbank_20GCA_5F000812885.1_202014-12-
31] 7,345 sequences; 40,250,382 total letters
Query= NC_020852.1
Length=186468
Score E
Sequences producing significant alignments: (Bits) Value
seq4887 288 1e-72
seq4745 104 3e-17
>seq4887
Length=16554
Score = 288 bits (318), Expect = 1e-72
Identities = 1144/1778 (64%), Gaps = 33/1778 (2%)
Strand=Plus/Plus
Query 75212 CCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGTC 75271
||||| | ||| ||||||| || || | || || ||||| || || ||||| || |
Sbjct 10247 CCACAACAAATGATCATGCGTGTTGCCGTTGGTATTCACGGTGATGATATTGAAAGTGCC 10306
Query 75272 TTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAACCCTCTT 75330
| || |||||| || ||||||| | | || || | ||||| | ||||| |||||
Sbjct 10307 ATCGAAACATACAACTTGATGTCCAACAAATACTTT-ACACACGCTTCTCCAACACTCTT 10365
Query 75331 CAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 75390
| ||| ||||| ||| | ||| | || ||||||||||| | | ||||||||
Sbjct 10366 CTCTGCGGGTACTCCACAGGCTCAGCTTTCATCATGCTTCCTTATTGATATGAAGGAGGA 10425
Query 75391 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 75450
|| | |||||||||| ||| | | | ||||| || |||||| |||||
Sbjct 10426 TAGTATTGATGGTATCTATGATACTTTGAAGATTTGTGCTATGATTTCAAAGAACGCTGG 10485
Query 75451 GGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAA 75510
|||||||| | ||||||| | | || | | | ||| || |||||
Sbjct 10486 TGGTATTGGTCTCAACATCCACAGAATCCGTGCTACTGGTGCCTACATTGCAGGCACAAA 10545
Query 75511 TGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGT 75570
||| | || | ||||| |||| |||||||| || || ||| ||| || | |||||
Sbjct 10546 CGGTAACTCTAACGGTATCGTTCCTATGCTTCGAGTTTTCAACAACACCGCTAGATATGT 10605
Query 75571 AAATCAAGCGGGGCGTCGCAAGGG-----GTCCATC-GCGGTCTACTTGGAACCATGGCA 75624
| |||| || | |||| | || ||| || || ||| | |||||||||||
Sbjct 10606 CGACCAAGGTGG---TAACAAGCGCCCTGGTGCATTTGCCGTTTACCTTGAACCATGGCA 10662
Query 75625 TGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTCGGTG 75684
||| ||| || | |||||| | || | ||| ||||| || | || || | | |
Sbjct 10663 TGCGGATGTCTTTGAGTTCTTGGACCTCCGAAAGAACCACGGCAAAGAGGAAGTTAGAGC 10722
Query 75685 TAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAGGG 75744
| |||||||| | |||| ||||||||||| || ||||||||||| ||||| ||
Sbjct 10723 ACGCGATCTCTTCTATGCCCTCTGGATTCCAGATCTCTTCATGAAGCGTGTTGAAAAGAA 10782
Query 75745 TGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACGCGGTGGGTGA 75804
|| | ||| | || | || || || | ||||| | | || | |||||
Sbjct 10783 CGGAGACTGGACACTCATGTGCCCTAACGAATGTCCAGGCTTGGCTGATGTCTATGGTGA 10842
Query 75805 GGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGG-AGGGTAGAGCCAATGCGACTGTAC 75863
|| || || || ||||| | || || ||| | |||| || | ||| | |
Sbjct 10843 TGAATTCGAGGCTCTCTATGAAGGTTACGA-GAGACAAGGTAAAGGTCGTAAGACCAT-C 10900
Query 75864 CAGCCGCCGATG-TTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCATAT 75922
|| | | | | ||||| | | || || | | ||||| |||||||||| || |
Sbjct 10901 AAGGCTCAAAAGCTTTGGTATTCCATCCTTGAGGCCCAGACTGAGACTGGAAACCCTTTC 10960
Query 75923 ATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAG 75982
||||||||||| |||||||| ||||| ||||||||||||||||| | || ||||||
Sbjct 10961 ATGCTTTACAAAGATGCTTGCAACAAAAAGAGTAACCAAAAGAACCTCGGCACAATCCGT 11020
Query 75983 AGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGTTTGC 76042
||||| || | ||||| ||||| | || ||| | | ||||||| ||| ||
Sbjct 11021 AGCTCCAACTTGTGCACAGAAATCGTCGAATACTCTGCACCGGATGAGGTTGCTTGCTGT 11080
Query 76043 AATTTGGCATCAATCGCCCTTCCAAAGTATGTCAA---TGAAGAGACTCGCACTTTTGAT 76099
|| ||||| || || || || |||| | |||||| | ||| | |||| ||||
Sbjct 11081 AACTTGGCTTCTATTGCTCTCCCAACCTTTGTCAACATGGCTGAG---GGAACTTATGAT 11137
Query 76100 TATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACCGAGTCATTGAC 76159
| |||| |||||||| || | ||||| || ||| | ||| | ||||||
Sbjct 11138 TTCCAAAAGCTTCATGAGGTCGTTCAAGTTGTTGTCAGAAACTTGAACAAGATTATTGAC 11197
Query 76160 AGAAATTTTTATCCCGT-TGAGACTGCGCGAAAGTCTAATATGCGACACAGACCTATTGG 76218
| || | ||||| || ||| || ||||| ||| | || ||| |||||||||
Sbjct 11198 ATCAACTACTATCCTGTCCCAGA-AGCTAGAAAGAGTAACTTCCGTCACCGACCTATTGC 11256
Query 76219 TTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGCTACGCATTTGATTCAGA 76278
| | |||||||| ||||| || |||| || | ||| | |||| ||||||
Sbjct 11257 TGTTGGTGTTCAGGGTCTTGCTGATGCCTTCCTGGCTCTCCGTTTGCCATTCGATTCACC 11316
Query 76279 TGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCACGCATCCCTGGAGGC 76338
||| ||||| | | || | || || || ||||| || |||| || || |
Sbjct 11317 TGAGGCCAAACATCTTAACATCCAGATTTTCGAGACCATCTACCACGGTGCCTTGACTTC 11376
Query 76339 GAGTTGTGA-ATTGGCTGAAGCCCAAGGTTCC-TATGAGACATTTGAGGGTTCTCCCGCG 76396
| | | | |||| | ||| || || |||||||| | || |||||||| |
Sbjct 11377 GTCTGTTCAGATTGCC--AAGGAGTTGGGCCCATATGAGACCTACGAAGGTTCTCCAGTT 11434
Query 76397 TCCCAAGGGGTGCTTCAGTTTGATATGTGGGAAGGTGAAACCA-AGCTCAACTACGACTG 76455
||| | || | ||||| | ||||||||||| | | | | || || || || ||
Sbjct 11435 TCCAAGGGTGAACTTCAATATGATATGTGGGGTGTTACTCCTACAGATC-TCTGGGATTG 11493
Query 76456 GGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCACC 76515
|||| |||||| || |||||| | | ||| |||| |||||| | | | || ||
Sbjct 11494 GGATAGCCTCAAGCAATCTATCAAGCAACATGGTATTCGCAACAGTTTGCTTGTTGCTCC 11553
Query 76516 AATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCATACAC 76575
|||||||| ||| || | ||||| | ||| || ||||| || || ||||||||
Sbjct 11554 TATGCCAACTGCCAGTACATCTCAAATTCTCGGTTTCAACGAATGTTTCGAGCCATACAC 11613
Query 76576 AACAAACATCTACCTGAGAAGAACCCTCGCAGGTGAGTTTGTCATTGTCAACAAGCACCT 76635
| |||||||| | | || || || ||||| |||||||| ||
Sbjct 11614 TTCCAACATCTATTCCCGTCGTGTGCTGGCCGGAGAGTTCCAAGTTGTCAACCCATGGCT 11673
Query 76636 CGTCAATGACCTCAAGAAGATTGGTCTCTGGTCCAAGGATATGAAGGATCTCATGGTGAA 76695
|||| || | | || || || ||||| | | |||||| | | ||| |
Sbjct 11674 TCTCAAGGATTTGGTCGACATGGGACTTTGGTCTGACAACATGAAGAACCGCATCATCGC 11733
Query 76696 AGCGGGTGGTTCCATTCAAAATATCTCAGATATCCCAGATGATATCAAGAATCTCTACCG 76755
| ||||| || |||||||| || | | ||||||| ||| ||||| |||||||
Sbjct 11734 TGACGGTGGATCTATTCAAAACATTCCCAACATCCCAGCTGAACTCAAGGCTCTCTACAA 11793
Query 76756 CACAGTGTGGGAAA--TCAAGATGAAAGATGTCATTGACATGGCCGCAGATCGTGGTCGC 76813
|| || ||||||| || | |||| | | || | ||||||||||| ||||||
Sbjct 11794 GACTGTTTGGGAAATCTCTCAACGAAACA--TTGTTCAGATGGCCGCAGACCGTGGTGCT 11851
Query 76814 TTCATTGATCAAAGTCAAAGTATGAATCTATTCATGGAAAGTCCAACGATGTCCAAGCTC 76873
||||| |||||| |||| ||||| | |||| | || || ||| |||| ||
Sbjct 11852 TTCATCGATCAATCTCAATCAATGAACATCCACATGAAGGACCCTACAATGGGCAAGATC 11911
Query 76874 TCTTCTATGCATATGTACGCGTGGAAACAGGGGCTCAAAACCGGAATGTACTATCTCCGA 76933
|||| |||||| | | |||||| || ||||| || |||||||||||||||||
Sbjct 11912 ACTTCCATGCATTTTGCTGGATGGAAATTAGGTCTCAAGACTGGAATGTACTATCTCCGT 11971
Query 76934 TCAAAGGCGAAAGCCCGACCAATTCAGTTCAGCCTTGA 76971
| | ||| || ||||||||| |||| | ||||
Sbjct 11972 ACTATGGCTGCTTCCGCACCAATTCAATTCACCGTTGA 12009
>seq4745
Length=15183
Score = 104 bits (114), Expect = 3e-17
Identities = 336/516 (65%), Gaps = 8/516 (2%)
Strand=Plus/Minus
Query 65005 ACTGTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGACACAAAGTCT 65064
|| || || || ||| |||||||||| | ||||| | | |||| |||| |||
Sbjct 9208 ACAGTTCCTTGCATTAAGAAGAAGGCCGACTGGGCTGTTAGATGGATTGAGGATAAGAA- 9150
Query 65065 CGCT-CCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGG 65123
| || |||| || | || || | || || || || || |||||||||||| ||
Sbjct 9149 CTCTACCTTTGCTCAACGTCTCGTCGCATTCGCTGCCGTTGAAGGTATCTTCTTCAGTGG 9090
Query 65124 GTCATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTC 65183
|| ||| | |||||| ||| | |||||||| || | ||| | || || ||| ||
Sbjct 9089 TTCCTTCGCCTCTATTTTCTGGCTCAAGAAGCGTGGCTTGATGGCTGGTCTCACCTTTTC 9030
Query 65184 AAATGAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCCGTGGAGCTCTTCAA 65243
|| || || || ||||| || |||||||| || || || ||| |||||||
Sbjct 9029 CAACGAGCTCATCTCCCGTGACGAGGGTCTTCATACCGACTTCGCCTGCCTGCTCTTCTC 8970
Query 65244 GACTTTGCGTAATAGACCCACTACCGAAACTATCCACGCCATCGTGAAAGAGGCGGTTGA 65303
| ||| || | || | | || | | || | | | | |||||| || |
Sbjct 8969 GCACTTGAAGCATCGCCCAAGCAAACAAGCCGTTCAGGATGTTATTACAGAGGCTGTCCA 8910
Query 65304 GATTGAGAAAGGGTTCATCTTGGACGCACTCCCATGTAATCTCATCGGTATGAACTCTGA 65363
||||||| ||| ||| | ||| || || |||||| |||| | || |||||||| ||
Sbjct 8909 GATTGAGCAAGAATTCTTGACGGAAGCTCTTCCATGTGCTCTCCTTGGCATGAACTCGGA 8850
Query 65364 GAAGATGTCCGAGTACATTGAGTATGTGTCGGATCGTCTCCTCAAACAAGTTGGGG-TGC 65422
|||| | |||||||||| || | || ||||| || |||| ||
Sbjct 8849 TTTGATGAAGCAATACATTGAGTTCGTCGCAGACCGTCTTCTTGTTGCTCTTGGTAATGA 8790
Query 65423 CACCCATTTGGAACGCGAAG--AATCCATTTGACTTTATGGAAAACATTAGCCTTGATGG 65480
| || | || || |||||||| ||||| |||||||||||| || | ||
Sbjct 8789 GAAGGTTT---ACCGATCAGCCAATCCATTCGACTTCATGGAAAACATTTCTCTCGCAGG 8733
Query 65481 GAAGACCAACTTCTTTGAGAAGCGAGTTGGGGACTA 65516
|||||||||||||| |||||||||||||| |||||
Sbjct 8732 CAAGACCAACTTCTTCGAGAAGCGAGTTGGCGACTA 8697
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 596514827453600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |