Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20echinophila_20[genbank_20GCA_5F000812885.1_202014-12- 31] 7,345 sequences; 40,250,382 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq5062 105 1e-17 seq894 93.3 8e-14 >seq5062 Length=19932 Score = 105 bits (116), Expect = 1e-17 Identities = 117/156 (75%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264 ||| || | ||| || ||||| || |||| | ||||||||||| || ||||| || || Sbjct 11149 ATCTTCGAGTTGCTTGCCGGCGAAGATTAGACGTTGTTGATCAGGTGGGATTCCCTCCTT 11208 Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324 ||| || || |||||||| | ||| ||||| ||||| ||||| || ||||| || || Sbjct 11209 ATCCTGGATCTTGGTTTTGACATTATCGATAGTGTCGGAGGACTCGACCTCTAGGGTGAT 11268 Query 193325 AGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 |||||||| || || || || || || || ||||| Sbjct 11269 GGTTTTACCCGTGAGGGTCTTGACGAAGATCTGCAT 11304 >seq894 Length=6424 Score = 93.3 bits (102), Expect = 8e-14 Identities = 162/236 (69%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| || ||||| | | ||||| |||| ||| || || | ||| || ||| || Sbjct 3430 ATTTGCATTCCACCACGAAGGCGAAGAACCAAATGTAAAGTCGACTCCTTTTGAATGTTG 3489 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 ||||| || | || | ||| || || || || || || || || | | |||||| Sbjct 3490 TAGTCCGACAGGGTACGGCCATCCTCCAACTGCTTACCAGCGAAGATGAGACGTTGTTGA 3549 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 ||||| || || ||||| || ||||| || ||| | |||| || |||||||| || Sbjct 3550 TCAGGTGGAATGCCTTCCTTGTCTTGAATCTTGCTCTTTACGTTGTCGATAGTATCAGAT 3609 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 |||||||| || | ||| || || || || || || || || || || || ||||| Sbjct 3610 GACTCAACCTCCAAAGTGATTGTCTTTCCGGTAAGAGTCTTGACGAAAATCTGCAT 3665 Score = 93.3 bits (102), Expect = 8e-14 Identities = 155/224 (69%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 |||||||| | | || || |||| ||| || || | || || || || |||||| Sbjct 3664 ATACCACCACGAAGTCTCAGAACCAAATGTAAAGTCGATTCCTTCTGGATGTTGTAGTCG 3723 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || | || | || || | ||| || || || || || || | ||||||||||| Sbjct 3724 GAAAGAGTGCGGCCGTCCTCAAGTTGCTTGCCAGCGAAGATCAAACGTTGTTGATCAGGG 3783 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || || || |||||||| || ||||| || | ||| |||||||| ||||| ||| Sbjct 3784 GGGATACCCTCCTTATCTTGAATCTTGGTCTTAACATTGTCGATAGTATCCGAAGATTCA 3843 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATAT 193354 || || ||||| ||||| || || || || || || || | ||| Sbjct 3844 ACCTCAAGAGTGATAGTCTTGCCGGTGAGAGTCTTGACGACTAT 3887 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899571800480400