Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20echinophila_20[genbank_20GCA_5F000812885.1_202014-12- 31] 7,345 sequences; 40,250,382 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq894 116 7e-21 seq5062 98.7 2e-15 >seq894 Length=6424 Score = 116 bits (128), Expect = 7e-21 Identities = 136/184 (74%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 171887 AATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCT 171946 ||| || ||||| || | || || | || |||||||| || ||||| ||||| |||| Sbjct 3255 AATGTTGTAATCCGAAAGAGTTCTACCATCCTCCAATTGCTTTCCAGCGAAAATCAATCG 3314 Query 171947 CTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGT 172006 |||||||| ||||| || || || || ||||| || || | || || ||| || || Sbjct 3315 TTGTTGGTCGGGTGGGATGCCCTCCTTGTCTTGGATCTTTGTCTTGACGTTATCAATGGT 3374 Query 172007 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTG 172066 |||||||||||| || |||| ||||| || || ||||| || || |||| || || || Sbjct 3375 ATCTGACGATTCCACCTCTAACGTAATTGTCTTTCCAGTCAAAGTCTTAACAAAGATTTG 3434 Query 172067 CATT 172070 |||| Sbjct 3435 CATT 3438 Score = 100 bits (110), Expect = 5e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| | ||| || | || ||||||||||| | ||| || ||| || || || Sbjct 3436 ATTCCACCACGAAGGCGAAGAACCAAATGTAAAGTCGACTCCTTTTGAATGTTGTAGTCC 3495 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | | || | || ||||| || |||||||| || || | | ||||| |||||| Sbjct 3496 GACAGGGTACGGCCATCCTCCAACTGCTTACCAGCGAAGATGAGACGTTGTTGATCAGGT 3555 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| || ||||| || || | ||||| || |||||||| || || || Sbjct 3556 GGAATGCCTTCCTTGTCTTGAATCTTGCTCTTTACGTTGTCGATAGTATCAGATGACTCA 3615 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || | ||| || || || || || | || || | ||| |||||||| Sbjct 3616 ACCTCCAAAGTGATTGTCTTTCCGGTAAGAGTCTTGACGAAAATCTGCAT 3665 Score = 93.3 bits (102), Expect = 8e-14 Identities = 155/224 (69%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | ||||| | || ||||||||||| | || || || || || || Sbjct 3664 ATACCACCACGAAGTCTCAGAACCAAATGTAAAGTCGATTCCTTCTGGATGTTGTAGTCG 3723 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | || || |||| || | ||| || ||||| || || || | ||||| ||||| Sbjct 3724 GAAAGAGTGCGGCCGTCCTCAAGTTGCTTGCCAGCGAAGATCAAACGTTGTTGATCAGGG 3783 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || || |||||||| || || | || ||||| |||||||| || ||||| Sbjct 3784 GGGATACCCTCCTTATCTTGAATCTTGGTCTTAACATTGTCGATAGTATCCGAAGATTCA 3843 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATAT 172063 || || ||||| || || || || || | || || | || ||| Sbjct 3844 ACCTCAAGAGTGATAGTCTTGCCGGTGAGAGTCTTGACGACTAT 3887 >seq5062 Length=19932 Score = 98.7 bits (108), Expect = 2e-15 Identities = 131/182 (72%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 171888 ATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTC 171947 || || ||||| || | || || | || || | ||| || || || || |||| | Sbjct 11123 ATGTTGTAATCGGAAAGAGTGCGGCCATCTTCGAGTTGCTTGCCGGCGAAGATTAGACGT 11182 Query 171948 TGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTA 172007 ||||| |||||||| ||||| || ||||| || || || |||| |||||| ||||| Sbjct 11183 TGTTGATCAGGTGGGATTCCCTCCTTATCCTGGATCTTGGTTTTGACATTATCGATAGTG 11242 Query 172008 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGC 172067 || || || || || ||||| || ||||||||||| || | || || | ||| |||||| Sbjct 11243 TCGGAGGACTCGACCTCTAGGGTGATGGTTTTACCCGTGAGGGTCTTGACGAAGATCTGC 11302 Query 172068 AT 172069 || Sbjct 11303 AT 11304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905052897201000