Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rutstroemia_20echinophila_20[genbank_20GCA_5F000812885.1_202014-12-
31] 7,345 sequences; 40,250,382 total letters
Query= NC_021249.1
Length=282895
Score E
Sequences producing significant alignments: (Bits) Value
seq894 116 7e-21
seq5062 98.7 2e-15
>seq894
Length=6424
Score = 116 bits (128), Expect = 7e-21
Identities = 136/184 (74%), Gaps = 0/184 (0%)
Strand=Plus/Plus
Query 171887 AATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCT 171946
||| || ||||| || | || || | || |||||||| || ||||| ||||| ||||
Sbjct 3255 AATGTTGTAATCCGAAAGAGTTCTACCATCCTCCAATTGCTTTCCAGCGAAAATCAATCG 3314
Query 171947 CTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGT 172006
|||||||| ||||| || || || || ||||| || || | || || ||| || ||
Sbjct 3315 TTGTTGGTCGGGTGGGATGCCCTCCTTGTCTTGGATCTTTGTCTTGACGTTATCAATGGT 3374
Query 172007 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTG 172066
|||||||||||| || |||| ||||| || || ||||| || || |||| || || ||
Sbjct 3375 ATCTGACGATTCCACCTCTAACGTAATTGTCTTTCCAGTCAAAGTCTTAACAAAGATTTG 3434
Query 172067 CATT 172070
||||
Sbjct 3435 CATT 3438
Score = 100 bits (110), Expect = 5e-16
Identities = 160/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899
|| ||||| | ||| || | || ||||||||||| | ||| || ||| || || ||
Sbjct 3436 ATTCCACCACGAAGGCGAAGAACCAAATGTAAAGTCGACTCCTTTTGAATGTTGTAGTCC 3495
Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959
|| | | || | || ||||| || |||||||| || || | | ||||| ||||||
Sbjct 3496 GACAGGGTACGGCCATCCTCCAACTGCTTACCAGCGAAGATGAGACGTTGTTGATCAGGT 3555
Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019
|| || ||||| || ||||| || || | ||||| || |||||||| || || ||
Sbjct 3556 GGAATGCCTTCCTTGTCTTGAATCTTGCTCTTTACGTTGTCGATAGTATCAGATGACTCA 3615
Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069
|| || | ||| || || || || || | || || | ||| ||||||||
Sbjct 3616 ACCTCCAAAGTGATTGTCTTTCCGGTAAGAGTCTTGACGAAAATCTGCAT 3665
Score = 93.3 bits (102), Expect = 8e-14
Identities = 155/224 (69%), Gaps = 0/224 (0%)
Strand=Plus/Plus
Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899
|||||||| | ||||| | || ||||||||||| | || || || || || ||
Sbjct 3664 ATACCACCACGAAGTCTCAGAACCAAATGTAAAGTCGATTCCTTCTGGATGTTGTAGTCG 3723
Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959
|| | || || |||| || | ||| || ||||| || || || | ||||| |||||
Sbjct 3724 GAAAGAGTGCGGCCGTCCTCAAGTTGCTTGCCAGCGAAGATCAAACGTTGTTGATCAGGG 3783
Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019
|| || || || |||||||| || || | || ||||| |||||||| || |||||
Sbjct 3784 GGGATACCCTCCTTATCTTGAATCTTGGTCTTAACATTGTCGATAGTATCCGAAGATTCA 3843
Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATAT 172063
|| || ||||| || || || || || | || || | || |||
Sbjct 3844 ACCTCAAGAGTGATAGTCTTGCCGGTGAGAGTCTTGACGACTAT 3887
>seq5062
Length=19932
Score = 98.7 bits (108), Expect = 2e-15
Identities = 131/182 (72%), Gaps = 0/182 (0%)
Strand=Plus/Plus
Query 171888 ATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTC 171947
|| || ||||| || | || || | || || | ||| || || || || |||| |
Sbjct 11123 ATGTTGTAATCGGAAAGAGTGCGGCCATCTTCGAGTTGCTTGCCGGCGAAGATTAGACGT 11182
Query 171948 TGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTA 172007
||||| |||||||| ||||| || ||||| || || || |||| |||||| |||||
Sbjct 11183 TGTTGATCAGGTGGGATTCCCTCCTTATCCTGGATCTTGGTTTTGACATTATCGATAGTG 11242
Query 172008 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGC 172067
|| || || || || ||||| || ||||||||||| || | || || | ||| ||||||
Sbjct 11243 TCGGAGGACTCGACCTCTAGGGTGATGGTTTTACCCGTGAGGGTCTTGACGAAGATCTGC 11302
Query 172068 AT 172069
||
Sbjct 11303 AT 11304
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 905052897201000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |