Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20echinophila_20[genbank_20GCA_5F000812885.1_202014-12- 31] 7,345 sequences; 40,250,382 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq4887 107 6e-18 seq5263 89.7 2e-12 seq4948 84.2 6e-11 >seq4887 Length=16554 Score = 107 bits (118), Expect = 6e-18 Identities = 555/878 (63%), Gaps = 13/878 (1%) Strand=Plus/Minus Query 155630 GTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTT 155689 |||||| || || || ||||| ||| || || ||| ||||| | ||||| ||||| Sbjct 11053 GTATTCGACGATTTCTGTGCACAAGTTGGAGCTACGGATTGTGCCGAGGTTCTTTTGGTT 10994 Query 155690 AGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGC 155749 | || |||| |||||||| ||||| || ||| | ||| |||| ||||| |||| || Sbjct 10993 ACTCTTTTTGTTGCAAGCATCTTTGTAAAGCATGAAAGGGTTTCCAGTCTCAGTCTGGGC 10934 Query 155750 GTCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGA 155809 || || || ||| || | | || || || ||| | | |||| Sbjct 10933 CTCAAGGATGGAATACCAAAGCTTTTGAGCCTTGATGGTCTTACGACCTTTACCTTGTCT 10874 Query 155810 CTCATAT--TTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGG 155867 ||| || |||||| | ||| | | | || ||||| || |||| || || || Sbjct 10873 CTCGTAACCTTCATAGAGAGCCTC--GAATTCATCACCATAGACATCAGCCAAGCCTGGA 10816 Query 155868 CACTTATCGGGGCAAAACAGCGACCAAATTTTATTACCGATT--ACACGCTCCATAAATA 155925 || | | ||||| | || | ||| | || | || ||||||| ||| || | Sbjct 10815 CATTCGTTAGGGCACATGAGTGTCCAGTCTCCGTT--CTTTTCAACACGCTTCATGAAGA 10758 Query 155926 CATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACT-CCTCATCGCCGTGA 155984 ||| ||| | |||||||| || || | ||| | | ||| |||| | |||||| Sbjct 10757 GATCTGGAATCCAGAGGGCATAGAAGAGATCGCGTGC-TCTAACTTCCTCTTTGCCGTGG 10699 Query 155985 TTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCA 156044 ||||| || || || ||||| || | ||| | ||| ||| || || || | ||| Sbjct 10698 TTCTTTCGGAGGTCCAAGAACTCAAAGACATCCGCATGCCATGGTTCAAGGTAAACGGCA 10639 Query 156045 AAACTACCATTCCTCTTG---CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACA 156101 || |||| | |||| ||||| || || ||||| | ||| || || ||||| || Sbjct 10638 AATGCACCAGGGCGCTTGTTACCACCTTGGTCGACATATCTAGCGGTGTTGTTGAAAACT 10579 Query 156102 CCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGAT 156161 | |||||||||| ||||| || || | || || || || ||| | | ||||| Sbjct 10578 CGAAGCATAGGAACGATACCGTTAGAGTTACCGTTTGTGCCTGCAATGTAGGCACCAGTA 10519 Query 156162 GAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCAT 156221 | || | | || || | || ||||||||||| | || ||||| ||| || Sbjct 10518 GCACGGATTCTGTGGATGTTGAGACCAATACCACCAGCGTTCTTTGAAATCATAGCACAA 10459 Query 156222 TCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCAC 156281 ||| | ||||| | ||||| |||||| ||| || | ||| | || |||| Sbjct 10458 ATCTTCAAAGTATCATAGATACCATCAATACTATCCTCCTTCATATCAATAAGGAAGCAT 10399 Query 156282 GAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAA 156341 || | |||| |||| || || || ||| ||||| || | || || |||| Sbjct 10398 GATGAAAGCTGAGCCTGTGGAGTACCCGCAGAGAAGAGTGTTGGAGAAGCGTGTGTAAAG 10339 Query 156342 TACTTATTAGACATATAATCGTATGTCTCCTTAATCTTCTCAAGATTAGACCCGTGAATA 156401 || || || ||||| | | |||||| || | | |||| || | ||||||||| Sbjct 10338 TATTTGTTGGACATCAAGTTGTATGTTTCGATGGCACTTTCAATATCATCACCGTGAATA 10279 Query 156402 CAGATAGAGACCCTCATCCACATATGCTGAGGACGCTCTACAATCACTCCATCAATTCGC 156461 | | | || | ||| ||| || || ||||| || ||| ||| || | || Sbjct 10278 CCAACGGCAACACGCATGATCATTTGTTGTGGACGTTCAGCAACATTTCCGTCGAGACGG 10219 Query 156462 AGAAGGTATGCGCGTTCCAGAGTTTTAAACCCGAAATA 156499 || ||||||| || || ||||| || || ||||| || Sbjct 10218 AGGAGGTATGATCGCTCAAGAGTCTTGAATCCGAAGTA 10181 >seq5263 Length=25422 Score = 89.7 bits (98), Expect = 2e-12 Identities = 142/202 (70%), Gaps = 4/202 (2%) Strand=Plus/Plus Query 289027 TTACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATT 289086 || |||| ||||| |||||||| || || || | ||| || | | | | ||| || || Sbjct 4178 TTTCCAATGGCATCGATTTCGTCGATAAATATGATACAGGGTGTAGTCTTTCTGGCCATG 4237 Query 289087 GCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAA 289146 || || | || | ||| || || ||||||| |||||| ||||||| ||||| || ||| Sbjct 4238 GCGAAAAGATCACGTACTCGAGAAGCTCCAACACCAACGAACATTTCAACAAACTCCGAA 4297 Query 289147 GCG--GATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTG 289204 | || ||| || ||||| || | |||||| ||| |||| | || | ||||| Sbjct 4298 CCACTGACACT--AAAGAATGGCACCCCAGATTCGCCGGCTGTTGCCTTTGCTAAAAGTG 4355 Query 289205 TCTTACCTGTTCCAGGTGGTCC 289226 ||||||| || || || || || Sbjct 4356 TCTTACCAGTACCCGGAGGCCC 4377 >seq4948 Length=26094 Score = 84.2 bits (92), Expect = 6e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 354016 GCGAGAGCACCAAGCGAGTCACGGTCGAGGAAATTAGTAGGTTCGTCAAGGATAAGAACG 354075 |||||| ||||||| || ||||| || | |||||| ||||||||||| || | | || Sbjct 8328 GCGAGACCACCAAGAGAATCACGATCCAAGAAATTGGTAGGTTCGTCTAGAACCAAAAGA 8269 Query 354076 TGCGGCTCCATCCACATTGCTGCAGCCAGAACTACCTTAACCTTCTGTCCGCCTGATAG 354134 ||||| | ||||||| ||| |||||| || ||||| ||||| || || || || || Sbjct 8268 TGCGGGTTGTTCCACATGGCTCCAGCCAACACAACCTTGACCTTTTGACCTCCAGAAAG 8210 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471679090465265