Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20echinophila_20[genbank_20GCA_5F000812885.1_202014-12- 31] 7,345 sequences; 40,250,382 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq3428 138 1e-26 seq1757 87.8 2e-11 >seq3428 Length=2966 Score = 138 bits (152), Expect = 1e-26 Identities = 96/109 (88%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 || ||||||||||||||||||||||| || |||||| |||| |||||| | || |||||| Sbjct 2616 GCTGCCAACTACCTCGACATCAAGCCACTTCTCGATGTTGGATGCAAGACCGTCGCCAAC 2675 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCA 1592294 ||||||||||| ||||| || ||||||||||| |||||||| ||||||| Sbjct 2676 ATGATCAAGGGAAAGTCCCCAGAGGAGATCCGAAAGACCTTCAACATCA 2724 >seq1757 Length=2536 Score = 87.8 bits (96), Expect = 2e-11 Identities = 109/148 (74%), Gaps = 1/148 (1%) Strand=Plus/Minus Query 19037 GCGCCAAG-AGGACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAG 19095 ||| |||| | || ||||| || || || || || ||||| ||||||||||| | Sbjct 1007 GCGACAAGCAAGATAGCATAGGAGGGACTGTAACCTGCGTCATCCGCAACGTGCCCAGCG 948 Query 19096 GCCTCGGCGAGCCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGA 19155 | ||||| ||||| || || ||||| || || || |||||| ||||||||||| | Sbjct 947 GTCTCGGTGAGCCCTGTTTCGACAAAATGGAAGCAATGCTCGCGCACGCCATGCTCAGCA 888 Query 19156 TCCCGGCCACCAAGGGATTCGAGATTGG 19183 | || ||| ||||||| |||||| |||| Sbjct 887 TTCCTGCCTCCAAGGGCTTCGAGGTTGG 860 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106536434903365