Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rutstroemia_20echinophila_20[genbank_20GCA_5F000812885.1_202014-12-
31] 7,345 sequences; 40,250,382 total letters
Query= NC_022646.1
Length=101818
Score E
Sequences producing significant alignments: (Bits) Value
seq5062 140 2e-28
seq894 113 3e-20
seq5771 98.7 6e-16
>seq5062
Length=19932
Score = 140 bits (154), Expect = 2e-28
Identities = 172/233 (74%), Gaps = 8/233 (3%)
Strand=Plus/Plus
Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810
||||| | || | |||||||| ||||| || ||||||||| ||||| || || ||
Sbjct 11078 CCTCCACGTAAACGCAGGACCAAGTGAAGAGTCGACTCCTTCTGGATGTTGTAATCGGAA 11137
Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870
|| |||| |||| || |||||||| ||||||||||| || ||||| || || | ||
Sbjct 11138 AGAGTGCGGCCATCTTCGAGTTGCTTGCCGGCGAAGATTAGACGTTGTTGATCAGGTGGG 11197
Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTC 34926
| |||||||| || | || || |||||| || ||||||| || || |||
Sbjct 11198 ATTCCCTCCTTATCCTGGATCTTGGTTTTGAC--AT--TATCGATAGTGTCGGAGGACTC 11253
Query 34927 GACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATGA 34979
||| || | ||| ||||| || |||||||||||||| || |||||||||||||
Sbjct 11254 GACCTCTAGGGTGATGGTTTTACCCGTGAGGGTCTTGACGAAGATCTGCATGA 11306
>seq894
Length=6424
Score = 113 bits (124), Expect = 3e-20
Identities = 152/212 (72%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
|| |||| ||| | |||||||||||| |||||||| || ||||| || | | ||||
Sbjct 3226 AGCACCAAGTGCAAGGTGCTCTCCTTTTGAATGTTGTAATCCGAAAGAGTTCTACCATCC 3285
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
|||| ||||||||| ||||| |||| |||||| ||||| | || | |||||||||||
Sbjct 3286 TCCAATTGCTTTCCAGCGAAAATCAATCGTTGTTGGTCGGGTGGGATGCCCTCCTTGTCT 3345
Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945
| || ||| |||||| | || | || | || || || | || || |||
Sbjct 3346 TGGATCTTTGTCTTGACGTTATCAATGGTATCTGACGATTCCACCTCTAACGTAATTGTC 3405
Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
||||| || | ||||| |||||||| |||||
Sbjct 3406 TTTCCAGTCAAAGTCTTAACAAAGATTTGCAT 3437
>seq5771
Length=11851
Score = 98.7 bits (108), Expect = 6e-16
Identities = 141/194 (73%), Gaps = 10/194 (5%)
Strand=Plus/Plus
Query 34788 CCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGA 34847
|||| || |||||||| || || | |||| |||| || ||||||||||| |||||||
Sbjct 7517 CCTTTTGGATGTTATAATCAGACAAAGTGCGTCCATCCTCAAGTTGCTTTCCAGCGAAGA 7576
Query 34848 TCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGT-TTGACGGAT 34906
||| ||||| || || | || | ||||||||||| || | | || || ||||| ||
Sbjct 7577 TCAAACGTTGTTGATCCGGGGGAATTCCCTCCTTGTC-TTGAATCTTGGTCTTGAC--AT 7633
Query 34907 GCTATCGAT----TCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTT 34962
| ||||| || || ||||| |||| ||| |||||||| ||||| | ||||||
Sbjct 7634 --TGTCGATGGTGTCGGAGGATTCGACCTCAAGGGTGATGGTCTTACCCGTCAAGGTCTT 7691
Query 34963 TACAAAGATCTGCA 34976
|| ||| | ||||
Sbjct 7692 GACGAAGCTATGCA 7705
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 325663644896555
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |