Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20echinophila_20[genbank_20GCA_5F000812885.1_202014-12- 31] 7,345 sequences; 40,250,382 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq5062 140 2e-28 seq894 113 3e-20 seq5771 98.7 6e-16 >seq5062 Length=19932 Score = 140 bits (154), Expect = 2e-28 Identities = 172/233 (74%), Gaps = 8/233 (3%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 ||||| | || | |||||||| ||||| || ||||||||| ||||| || || || Sbjct 11078 CCTCCACGTAAACGCAGGACCAAGTGAAGAGTCGACTCCTTCTGGATGTTGTAATCGGAA 11137 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 || |||| |||| || |||||||| ||||||||||| || ||||| || || | || Sbjct 11138 AGAGTGCGGCCATCTTCGAGTTGCTTGCCGGCGAAGATTAGACGTTGTTGATCAGGTGGG 11197 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTC 34926 | |||||||| || | || || |||||| || ||||||| || || ||| Sbjct 11198 ATTCCCTCCTTATCCTGGATCTTGGTTTTGAC--AT--TATCGATAGTGTCGGAGGACTC 11253 Query 34927 GACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATGA 34979 ||| || | ||| ||||| || |||||||||||||| || ||||||||||||| Sbjct 11254 GACCTCTAGGGTGATGGTTTTACCCGTGAGGGTCTTGACGAAGATCTGCATGA 11306 >seq894 Length=6424 Score = 113 bits (124), Expect = 3e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| ||| | |||||||||||| |||||||| || ||||| || | | |||| Sbjct 3226 AGCACCAAGTGCAAGGTGCTCTCCTTTTGAATGTTGTAATCCGAAAGAGTTCTACCATCC 3285 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 |||| ||||||||| ||||| |||| |||||| ||||| | || | ||||||||||| Sbjct 3286 TCCAATTGCTTTCCAGCGAAAATCAATCGTTGTTGGTCGGGTGGGATGCCCTCCTTGTCT 3345 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || ||| |||||| | || | || | || || || | || || ||| Sbjct 3346 TGGATCTTTGTCTTGACGTTATCAATGGTATCTGACGATTCCACCTCTAACGTAATTGTC 3405 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| || | ||||| |||||||| ||||| Sbjct 3406 TTTCCAGTCAAAGTCTTAACAAAGATTTGCAT 3437 >seq5771 Length=11851 Score = 98.7 bits (108), Expect = 6e-16 Identities = 141/194 (73%), Gaps = 10/194 (5%) Strand=Plus/Plus Query 34788 CCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGA 34847 |||| || |||||||| || || | |||| |||| || ||||||||||| ||||||| Sbjct 7517 CCTTTTGGATGTTATAATCAGACAAAGTGCGTCCATCCTCAAGTTGCTTTCCAGCGAAGA 7576 Query 34848 TCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGT-TTGACGGAT 34906 ||| ||||| || || | || | ||||||||||| || | | || || ||||| || Sbjct 7577 TCAAACGTTGTTGATCCGGGGGAATTCCCTCCTTGTC-TTGAATCTTGGTCTTGAC--AT 7633 Query 34907 GCTATCGAT----TCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTT 34962 | ||||| || || ||||| |||| ||| |||||||| ||||| | |||||| Sbjct 7634 --TGTCGATGGTGTCGGAGGATTCGACCTCAAGGGTGATGGTCTTACCCGTCAAGGTCTT 7691 Query 34963 TACAAAGATCTGCA 34976 || ||| | |||| Sbjct 7692 GACGAAGCTATGCA 7705 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325663644896555