Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20echinophila_20[genbank_20GCA_5F000812885.1_202014-12- 31] 7,345 sequences; 40,250,382 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq5771 107 1e-18 seq894 107 1e-18 >seq5771 Length=11851 Score = 107 bits (118), Expect = 1e-18 Identities = 138/188 (73%), Gaps = 2/188 (1%) Strand=Plus/Plus Query 29599 TTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATC 29658 ||||| ||||||||||| | | ||||| ||| || ||||| || ||||| | ||| Sbjct 7519 TTTTGGATGTTATAATCAGACAAAGTGCGTCCATCCTCAAGTTGCTTTCCAGCGAAGATC 7578 Query 29659 AATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTTTC 29717 || | ||| |||||||| ||||| ||||| |||||||| ||| || || |||||| | || Sbjct 7579 AAACGTTGTTGATCCGGGGGAATTCCCTCCTTGTCTTG-AATCTTGGTCTTGACATTGTC 7637 Query 29718 TACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAA 29777 | ||||| || ||| || ||||| || || || || || || ||||| || || || Sbjct 7638 GATGGTGTCGGAGGATTCGACCTCAAGGGTGATGGTCTTACCCGTCAAGGTCTTGACGAA 7697 Query 29778 TATCTGCA 29785 | |||| Sbjct 7698 GCTATGCA 7705 >seq894 Length=6424 Score = 107 bits (118), Expect = 1e-18 Identities = 156/218 (72%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| |||||||| || | ||| || ||||||||||| ||||||| || || | | Sbjct 3222 ACGAAGCACCAAGTGCAAGGTGCTCTCCTTTTGAATGTTGTAATCCGAAAGAGTTCTACC 3281 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || | ||| || ||||| | ||||||| ||| || || || || || ||||| || Sbjct 3282 ATCCTCCAATTGCTTTCCAGCGAAAATCAATCGTTGTTGGTCGGGTGGGATGCCCTCCTT 3341 Query 29691 GTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 |||||| || ||||| ||||| | || | || || || ||| || || | || | Sbjct 3342 GTCTTG-GATCTTTGTCTTGACGTTATCAATGGTATCTGACGATTCCACCTCTAACGTAA 3400 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 | || || ||||| || || |||||||| || |||||| Sbjct 3401 TTGTCTTTCCAGTCAAAGTCTTAACAAAGATTTGCATT 3438 Score = 93.3 bits (102), Expect = 3e-14 Identities = 140/194 (72%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATC-CGCAATGGTGCGAG 29629 ||| || || | ||| || || || || || || ||||| || || | ||| | | ||| Sbjct 3962 ACGGAGGACGAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTCAAAG-TACGAC 4020 Query 29630 AATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTT 29689 ||| |||||||| ||||||||| | ||||| | || || || || ||||||||||| | Sbjct 4021 CATCCTCGAGTTGCTTGCCAGCAAAGATCAAACGCTGTTGGTCAGGAGGAATACCCTCCT 4080 Query 29690 TGTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTT 29748 | || || || || || ||||| | || | |||||| ||| ||| || ||||| || Sbjct 4081 TATCCTG-GATCTTAGTCTTGACGTTGTCGATAGTGTCGGAAGATTCAACCTCAAGGGTG 4139 Query 29749 ATAGTTTTGCCAGT 29762 || || ||||| || Sbjct 4140 ATGGTCTTGCCGGT 4153 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385184716260645