Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rutstroemia_20echinophila_20[genbank_20GCA_5F000812885.1_202014-12-
31] 7,345 sequences; 40,250,382 total letters
Query= NC_023442.1
Length=120420
Score E
Sequences producing significant alignments: (Bits) Value
seq5771 107 1e-18
seq894 107 1e-18
>seq5771
Length=11851
Score = 107 bits (118), Expect = 1e-18
Identities = 138/188 (73%), Gaps = 2/188 (1%)
Strand=Plus/Plus
Query 29599 TTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATC 29658
||||| ||||||||||| | | ||||| ||| || ||||| || ||||| | |||
Sbjct 7519 TTTTGGATGTTATAATCAGACAAAGTGCGTCCATCCTCAAGTTGCTTTCCAGCGAAGATC 7578
Query 29659 AATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTTTC 29717
|| | ||| |||||||| ||||| ||||| |||||||| ||| || || |||||| | ||
Sbjct 7579 AAACGTTGTTGATCCGGGGGAATTCCCTCCTTGTCTTG-AATCTTGGTCTTGACATTGTC 7637
Query 29718 TACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAA 29777
| ||||| || ||| || ||||| || || || || || || ||||| || || ||
Sbjct 7638 GATGGTGTCGGAGGATTCGACCTCAAGGGTGATGGTCTTACCCGTCAAGGTCTTGACGAA 7697
Query 29778 TATCTGCA 29785
| ||||
Sbjct 7698 GCTATGCA 7705
>seq894
Length=6424
Score = 107 bits (118), Expect = 1e-18
Identities = 156/218 (72%), Gaps = 2/218 (1%)
Strand=Plus/Plus
Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630
||| |||||||| || | ||| || ||||||||||| ||||||| || || | |
Sbjct 3222 ACGAAGCACCAAGTGCAAGGTGCTCTCCTTTTGAATGTTGTAATCCGAAAGAGTTCTACC 3281
Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690
||| || | ||| || ||||| | ||||||| ||| || || || || || ||||| ||
Sbjct 3282 ATCCTCCAATTGCTTTCCAGCGAAAATCAATCGTTGTTGGTCGGGTGGGATGCCCTCCTT 3341
Query 29691 GTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749
|||||| || ||||| ||||| | || | || || || ||| || || | || |
Sbjct 3342 GTCTTG-GATCTTTGTCTTGACGTTATCAATGGTATCTGACGATTCCACCTCTAACGTAA 3400
Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787
| || || ||||| || || |||||||| || ||||||
Sbjct 3401 TTGTCTTTCCAGTCAAAGTCTTAACAAAGATTTGCATT 3438
Score = 93.3 bits (102), Expect = 3e-14
Identities = 140/194 (72%), Gaps = 4/194 (2%)
Strand=Plus/Plus
Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATC-CGCAATGGTGCGAG 29629
||| || || | ||| || || || || || || ||||| || || | ||| | | |||
Sbjct 3962 ACGGAGGACGAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTCAAAG-TACGAC 4020
Query 29630 AATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTT 29689
||| |||||||| ||||||||| | ||||| | || || || || ||||||||||| |
Sbjct 4021 CATCCTCGAGTTGCTTGCCAGCAAAGATCAAACGCTGTTGGTCAGGAGGAATACCCTCCT 4080
Query 29690 TGTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTT 29748
| || || || || || ||||| | || | |||||| ||| ||| || ||||| ||
Sbjct 4081 TATCCTG-GATCTTAGTCTTGACGTTGTCGATAGTGTCGGAAGATTCAACCTCAAGGGTG 4139
Query 29749 ATAGTTTTGCCAGT 29762
|| || ||||| ||
Sbjct 4140 ATGGTCTTGCCGGT 4153
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 385184716260645
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |