Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20echinophila_20[genbank_20GCA_5F000812885.1_202014-12- 31] 7,345 sequences; 40,250,382 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq4570 118 8e-21 seq78 116 3e-20 seq5547 102 6e-16 seq4803 96.9 3e-14 >seq4570 Length=38393 Score = 118 bits (130), Expect = 8e-21 Identities = 127/168 (76%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 432288 GGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAGCGTGTCGATATGTCTGCACGT 432347 || || || ||||| || | ||||||||||||||||||||||||||| | || || ||| Sbjct 600 GGAAAGGAGGGTCGACTTCGTGGAAATTTGATGGGAAAGCGTGTCGATTTCTCAGCGCGT 659 Query 432348 ACAGTTATTACTTCTGATCCTAATATTGCTCTCAATGAAGTTGGTGTTCCTCTCATTATT 432407 || || || ||| ||| |||||| || ||||| | ||||| |||||||| | | ||| Sbjct 660 ACTGTCATCACTGGTGACCCTAATCTTTCTCTCGACGAAGTCGGTGTTCCACGAAGTATC 719 Query 432408 GCGAAAAATCTTACTTTTGACGAAATTGTAACAGAACATAATATTGAT 432455 || | || ||| || ||| ||| | |||||| || ||||||||| Sbjct 720 GCTAGAATTCTCACATTTCCCGAGACTGTAACGCCACTCAATATTGAT 767 >seq78 Length=25977 Score = 116 bits (128), Expect = 3e-20 Identities = 250/369 (68%), Gaps = 5/369 (1%) Strand=Plus/Plus Query 281441 ATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGT 281500 ||||| |||||||| | ||| |||||||| || |||||||| || || | | |||||| Sbjct 24273 ATACCGTTGGCATCAATATCGAATGTGACCTCGATTTGAGGAACACCACGTGGTGCAGGT 24332 Query 281501 GGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCA 281560 ||||| || | | ||| | |||| || ||||| || ||| || || ||| Sbjct 24333 GGGATACCAGTGAGTTCGAATTTGCCCATCAAGTTGTTATCCTTGGTGCGTTGACGCTCA 24392 Query 281561 CCCTCGAAAATTTGGAT-AGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCT 281619 |||||||| | ||| || ||| || ||| ||| || || || | || | || || Sbjct 24393 CCCTCGAATACTTGAATCAGT-ACACCAGGTTGGTTGTCAGAGAAGGTGGAGAAAACCTC 24451 Query 281620 GGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCAGC 281679 ||| || || ||| || || ||||||| ||| | |||||||| |||||||| Sbjct 24452 GGACTTCTTGGTAGGGATGGTGGTGTTTCGGGGAATGAGCTTGGTCATCTGTCCACCAGC 24511 Query 281680 TGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATAT--TTTGAAGTTTT 281737 || || | ||| ||||| | || | |||||| | || | || | || | | || Sbjct 24512 AGTCTCGATACCGAGAGACAATGGGGCGACATCGAGAAGAAGGATCTCGTTGGTGGACTT 24571 Query 281738 TCATCA-GTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTC 281796 || | || | |||| ||||| || || || | |||||||| ||||||||||| || Sbjct 24572 GGATGAGGTGTCACCAGAGAGAATGGCAGCCTGGACGGCAGCACCGTATGCAACAGCCTC 24631 Query 281797 ATCAGGATT 281805 |||||| || Sbjct 24632 ATCAGGGTT 24640 Score = 93.3 bits (102), Expect = 3e-13 Identities = 189/281 (67%), Gaps = 0/281 (0%) Strand=Plus/Plus Query 282182 ACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACT 282241 |||||||| || || || || ||||| ||||| | ||| | || | || | | || Sbjct 25451 ACAAGACGGTTGTCGAAGTCCTCACCACCCAAGTGAGTGTCACCGGCAGTGGACTTAACC 25510 Query 282242 TGGAAAAGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCA 282301 | ||| | || || || | | ||| |||| ||||| ||||| ||||| | ||| Sbjct 25511 TCGAAGATACCTTCCTCGATGGTCAAGAGAGAGACATCGAAAGTTCCTCCACCAAGATCG 25570 Query 282302 AAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCA 282361 || || || || || ||| || || || || | ||| || |||| || || Sbjct 25571 AAGATGAGAACGTTACGTTCACCCTCGACCTTCTTGTCCAAACCGTAAGCAATGGCGGCT 25630 Query 282362 GCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTA 282421 || || || || ||||| ||||| | ||| |||||||||||||| || || || || Sbjct 25631 GCGGTAGGCTCGTTAATGATTCTGAGAACGTTAAGACCAGCAATCAGACCAGCGTCCTTT 25690 Query 282422 GTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGT 282462 |||||||| | ||| || ||| | || ||||| || || || Sbjct 25691 GTGGCTTGACGTTGAGAGTCGGTGAAGTATGCTGGGACGGT 25731 >seq5547 Length=23933 Score = 102 bits (112), Expect = 6e-16 Identities = 193/283 (68%), Gaps = 7/283 (2%) Strand=Plus/Plus Query 282194 TCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCA 282253 || ||||||| ||||||||| | ||| | || | ||||| | || ||| | ||| Sbjct 9451 TCGAAATCTTGACCTCCCAAGTGAGTGTCACCAGCAGTAGCCTTAACGGTGAAGACACCA 9510 Query 282254 TCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACA 282313 ||| || ||| || | |||||| ||||||||||| | |||| | || || || Sbjct 9511 CCTTGAATGTTCAAGAGGGAAACATCGAAAGTTCCACCACCGAGATCATAGATGAGAACG 9570 Query 282314 TTCATTTCTTTGTCTTGGTTTTT-----ATCAAGACCATACGCAAAAGCAGCAGCAGTTG 282368 || || |||| |||| ||| | ||||||| || || | ||||||||||| | Sbjct 9571 TTTCGCTCCTTGT--TGGTCTTTCCAGCACCAAGACCGTATGCGATGGCAGCAGCAGTGG 9628 Query 282369 GTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTT 282428 |||| ||||| || | | || || ||||| ||||| || ||||| || || || | Sbjct 9629 GTTCGTTAATGATACGGAGGACGTTGAGACCGGCAATGGCACCAGCATCCTTGGTAGCCT 9688 Query 282429 GTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGC 282471 | | ||| ||||| || || || |||||||| || ||||| Sbjct 9689 GACGTTGGTTGTCGTTGAAGTAGGCTGGAACAGTGATGACGGC 9731 >seq4803 Length=18444 Score = 96.9 bits (106), Expect = 3e-14 Identities = 146/208 (70%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 282670 ACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTT 282729 ||| ||||| || || ||||| || | || ||| ||| || | || |||| | || Sbjct 152 ACCGATTAAACGCTTAGCATCGAAGACGGTGTTGTATGGGTTCATAGCGACTTGGTTCTT 211 Query 282730 GGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCG 282789 ||| ||||||||||||| | | || || || || || | ||| | || ||||| || || Sbjct 212 GGCGGCATCTCCAATCAAACGCTCAGTATCGGTGAAAGCAACGAACGAAGGAGTGGTTCG 271 Query 282790 ATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACT 282849 || ||||| ||||| ||||||||||| | | | ||| | | | |||||||||| Sbjct 272 GTTTCCTTGGTCATTGGCAATAATTTCGATTCTGTCATCTCTGAAGATACCTACACAAGA 331 Query 282850 AAAAGTTGTTCCTAAATCAATACCAATA 282877 | || || || ||||| ||||| ||| Sbjct 332 GTAGGTGGTACCCAAATCGATACCGATA 359 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740269791539970