Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20echinophila_20[genbank_20GCA_5F000812885.1_202014-12- 31] 7,345 sequences; 40,250,382 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq894 131 3e-25 seq5771 109 1e-18 >seq894 Length=6424 Score = 131 bits (144), Expect = 3e-25 Identities = 153/207 (74%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 82598 CAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTC 82657 |||||| || || | ||| ||||| ||||| || || || || || ||| | | ||||| Sbjct 3681 CAGAACCAAATGTAAAGTCGATTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCGTC 3740 Query 82658 TTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATC 82717 || ||||| || ||||| ||||| | | ||||||||| || || || || |||||||| Sbjct 3741 CTCAAGTTGCTTGCCAGCGAAGATCAAACGTTGTTGATCAGGGGGGATACCCTCCTTATC 3800 Query 82718 TTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGT 82777 ||||||||| | || ||||| || || ||||| || ||| || || | ||| || || Sbjct 3801 TTGAATCTTGGTCTTAACATTGTCGATAGTATCCGAAGATTCAACCTCAAGAGTGATAGT 3860 Query 82778 CTTGCCTGTCAACGTCTTTACAAATAT 82804 |||||| || | ||||| || | ||| Sbjct 3861 CTTGCCGGTGAGAGTCTTGACGACTAT 3887 Score = 116 bits (128), Expect = 7e-21 Identities = 157/216 (73%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || ||||| || || | ||| || || || || || || || || || || | | || Sbjct 3451 CGAAGAACCAAATGTAAAGTCGACTCCTTTTGAATGTTGTAGTCCGACAGGGTACGGCCA 3510 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || | || || ||||| ||||| || | ||||||||| || || || |||||||| Sbjct 3511 TCCTCCAACTGCTTACCAGCGAAGATGAGACGTTGTTGATCAGGTGGAATGCCTTCCTTG 3570 Query 82716 TCTTGAATCTTTGCT-TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 ||||||||| ||||| ||||| || || || |||||| | || || |||||||| || Sbjct 3571 TCTTGAATC-TTGCTCTTTACGTTGTCGATAGTATCAGATGACTCAACCTCCAAAGTGAT 3629 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || || | ||||| || || |||||||| Sbjct 3630 TGTCTTTCCGGTAAGAGTCTTGACGAAAATCTGCAT 3665 Score = 86.0 bits (94), Expect = 1e-11 Identities = 142/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| || || | || |||||||| || ||||| || || || || Sbjct 3949 TACCGCCACGAAGACGGAGGACGAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGC 4008 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | | | ||| || || ||||| || ||||||||||| | | ||||| || |||| Sbjct 4009 TCAAAGTACGACCATCCTCGAGTTGCTTGCCAGCAAAGATCAAACGCTGTTGGTCAGGAG 4068 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || || |||||||| || ||||| | || || || || || || || || ||| | Sbjct 4069 GAATACCCTCCTTATCCTGGATCTTAGTCTTGACGTTGTCGATAGTGTCGGAAGATTCAA 4128 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGT 82786 | || | || || |||||||| || Sbjct 4129 CCTCAAGGGTGATGGTCTTGCCGGT 4153 >seq5771 Length=11851 Score = 109 bits (120), Expect = 1e-18 Identities = 142/195 (73%), Gaps = 1/195 (1%) Strand=Plus/Plus Query 82623 TTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATT 82682 || || || ||||||||||| | | | | || || || ||||| |||||||| ||||| Sbjct 7519 TTTTGGATGTTATAATCAGACAAAGTGCGTCCATCCTCAAGTTGCTTTCCAGCGAAGATC 7578 Query 82683 AGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCA 82742 | | ||||||||| || || ||||| ||||| ||||||||||| | || ||||| || Sbjct 7579 AAACGTTGTTGATCCGGGGGAATTCCCTCCTTGTCTTGAATCTTGGTCTTGACATTGTCG 7638 Query 82743 ATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAAT 82802 || || || | ||| || || | || || ||||| || ||||| ||||| || || Sbjct 7639 ATGGTGTCGGAGGATTCGACCTCAAGGGTGATGGTCTTACCCGTCAAGGTCTTGACGAAG 7698 Query 82803 ATCTGC-ATTATTAT 82816 | ||| | |||||| Sbjct 7699 CTATGCAAATATTAT 7713 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981734802389955