Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rutstroemia_20echinophila_20[genbank_20GCA_5F000812885.1_202014-12-
31] 7,345 sequences; 40,250,382 total letters
Query= NC_024446.1
Length=306862
Score E
Sequences producing significant alignments: (Bits) Value
seq894 131 3e-25
seq5771 109 1e-18
>seq894
Length=6424
Score = 131 bits (144), Expect = 3e-25
Identities = 153/207 (74%), Gaps = 0/207 (0%)
Strand=Plus/Plus
Query 82598 CAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTC 82657
|||||| || || | ||| ||||| ||||| || || || || || ||| | | |||||
Sbjct 3681 CAGAACCAAATGTAAAGTCGATTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCGTC 3740
Query 82658 TTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATC 82717
|| ||||| || ||||| ||||| | | ||||||||| || || || || ||||||||
Sbjct 3741 CTCAAGTTGCTTGCCAGCGAAGATCAAACGTTGTTGATCAGGGGGGATACCCTCCTTATC 3800
Query 82718 TTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGT 82777
||||||||| | || ||||| || || ||||| || ||| || || | ||| || ||
Sbjct 3801 TTGAATCTTGGTCTTAACATTGTCGATAGTATCCGAAGATTCAACCTCAAGAGTGATAGT 3860
Query 82778 CTTGCCTGTCAACGTCTTTACAAATAT 82804
|||||| || | ||||| || | |||
Sbjct 3861 CTTGCCGGTGAGAGTCTTGACGACTAT 3887
Score = 116 bits (128), Expect = 7e-21
Identities = 157/216 (73%), Gaps = 2/216 (1%)
Strand=Plus/Plus
Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655
|| ||||| || || | ||| || || || || || || || || || || | | ||
Sbjct 3451 CGAAGAACCAAATGTAAAGTCGACTCCTTTTGAATGTTGTAGTCCGACAGGGTACGGCCA 3510
Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715
|| || | || || ||||| ||||| || | ||||||||| || || || ||||||||
Sbjct 3511 TCCTCCAACTGCTTACCAGCGAAGATGAGACGTTGTTGATCAGGTGGAATGCCTTCCTTG 3570
Query 82716 TCTTGAATCTTTGCT-TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774
||||||||| ||||| ||||| || || || |||||| | || || |||||||| ||
Sbjct 3571 TCTTGAATC-TTGCTCTTTACGTTGTCGATAGTATCAGATGACTCAACCTCCAAAGTGAT 3629
Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
||||| || || | ||||| || || ||||||||
Sbjct 3630 TGTCTTTCCGGTAAGAGTCTTGACGAAAATCTGCAT 3665
Score = 86.0 bits (94), Expect = 1e-11
Identities = 142/205 (69%), Gaps = 0/205 (0%)
Strand=Plus/Plus
Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641
|||| || | | ||| || || | || |||||||| || ||||| || || || ||
Sbjct 3949 TACCGCCACGAAGACGGAGGACGAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGC 4008
Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701
| | | | ||| || || ||||| || ||||||||||| | | ||||| || ||||
Sbjct 4009 TCAAAGTACGACCATCCTCGAGTTGCTTGCCAGCAAAGATCAAACGCTGTTGGTCAGGAG 4068
Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761
| || || |||||||| || ||||| | || || || || || || || || ||| |
Sbjct 4069 GAATACCCTCCTTATCCTGGATCTTAGTCTTGACGTTGTCGATAGTGTCGGAAGATTCAA 4128
Query 82762 CTTCCAAAGTTATCGTCTTGCCTGT 82786
| || | || || |||||||| ||
Sbjct 4129 CCTCAAGGGTGATGGTCTTGCCGGT 4153
>seq5771
Length=11851
Score = 109 bits (120), Expect = 1e-18
Identities = 142/195 (73%), Gaps = 1/195 (1%)
Strand=Plus/Plus
Query 82623 TTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATT 82682
|| || || ||||||||||| | | | | || || || ||||| |||||||| |||||
Sbjct 7519 TTTTGGATGTTATAATCAGACAAAGTGCGTCCATCCTCAAGTTGCTTTCCAGCGAAGATC 7578
Query 82683 AGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCA 82742
| | ||||||||| || || ||||| ||||| ||||||||||| | || ||||| ||
Sbjct 7579 AAACGTTGTTGATCCGGGGGAATTCCCTCCTTGTCTTGAATCTTGGTCTTGACATTGTCG 7638
Query 82743 ATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAAT 82802
|| || || | ||| || || | || || ||||| || ||||| ||||| || ||
Sbjct 7639 ATGGTGTCGGAGGATTCGACCTCAAGGGTGATGGTCTTACCCGTCAAGGTCTTGACGAAG 7698
Query 82803 ATCTGC-ATTATTAT 82816
| ||| | ||||||
Sbjct 7699 CTATGCAAATATTAT 7713
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 981734802389955
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |