Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rutstroemia_20echinophila_20[genbank_20GCA_5F000812885.1_202014-12-
31] 7,345 sequences; 40,250,382 total letters
Query= NC_024697.1
Length=370920
Score E
Sequences producing significant alignments: (Bits) Value
seq4887 167 6e-36
seq4745 100 7e-16
>seq4887
Length=16554
Score = 167 bits (184), Expect = 6e-36
Identities = 520/798 (65%), Gaps = 9/798 (1%)
Strand=Plus/Plus
Query 110304 TATTTTGGTTTCAAAACTCTTGAACGTGCTTATTTACTTCGTGTCAATGGCGAGATCATT 110363
|| || || ||||| |||||||| || | || | || ||| || | || | | |
Sbjct 10181 TACTTCGGATTCAAGACTCTTGAGCGATCATACCTCCTCCGTCTCGACGGAAATGTTGCT 10240
Query 110364 GAACGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATTAAA 110423
|||||||| ||||| ||| | | |||||||| |||||||||| || |||||||| ||
Sbjct 10241 GAACGTCCACAACAAATGATCATGCGTGTTGCCGTTGGTATTCACGGTGATGATATTGAA 10300
Query 110424 GCTGTTATTGAATGTTATGATGTATTAAGTAAAAAGAAAGCTATTCATGCTACTCCTACC 110483
|| || ||| || | | | || || | || || ||| |||| ||
Sbjct 10301 AGTGCCATCGAAACATACAACTTGATGTCCAACAAATACTTTACACACGCTTCTCCAACA 10360
Query 110484 CTATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCTTTCTTCTAGGAATTAAC 110543
|| || || || ||| | || | | || ||||| ||| | | || ||
Sbjct 10361 CTCTTCTCTGCGGGTACTCCACAGGCTCAGCTTTCATCATGCTTCCTTATTGATATGAAG 10420
Query 110544 GATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAAC-TGCTCTTATTTCTAAAAA 110602
|| ||| |||||| ||||| |||||| || || |||| |||| | ||||| || ||
Sbjct 10421 GAGGATAGTATTGATGGTATCTATGATACT-TTGAAGATTTGTGCTATGATTTCAAAGAA 10479
Query 110603 CTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATATCGCAAC 110662
| |||| || |||||| | || | || || || | | || || | || |||
Sbjct 10480 CGCTGGTGGTATTGGTCTCAACATCCACAGAATCCGTGCTACTGGTGCCTACATTGCAGG 10539
Query 110663 AGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAAA 110722
| || ||| || | || | ||||| ||| | |||| |||||| |||| || |
Sbjct 10540 CACAAACGGTAACTCTAACGGTATCGTTCCTATGCTTCGAGTTTTCAACAACACCGCTAG 10599
Query 110723 ATATGTGAATCAAGGTGGT---AAGAGAAATGGCTCATTTGCTATCTATCTCGAACCTTG 110779
|||||| | ||||||||| ||| | ||| ||||||| | || || ||||| ||
Sbjct 10600 ATATGTCGACCAAGGTGGTAACAAGCGCCCTGGTGCATTTGCCGTTTACCTTGAACCATG 10659
Query 110780 GCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACAAAG 110839
|||| | ||| | ||||| ||||| || || || || || || || || ||| ||
Sbjct 10660 GCATGCGGATGTCTTTGAGTTCTTGGACCTCCGAAAGAACCACGGCAAAGAGGAAGTTAG 10719
Query 110840 AGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCAAGA 110899
|||||| ||| | || ||||| | |||||| ||||| | |||||||| |||||| || |
Sbjct 10720 AGCACGCGATCTCTTCTATGCCCTCTGGATTCCAGATCTCTTCATGAAGCGTGTTGAAAA 10779
Query 110900 AAATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGTATATGG 110959
|| || ||| | || ||||| ||| | | ||| || | ||||||| |||||
Sbjct 10780 GAACGGAGACTGGACACTCATGTGCCCTAACGAATGTCCAGGCTTGGCTGATGTCTATGG 10839
Query 110960 AAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAAGGCAAGTTTCGCAA-ACAAA 111018
| || || || | || || ||| || || | | |||| || ||| || || |
Sbjct 10840 TGATGAATTCGAGGCTCTCTATGAAGGTTACGAGAGACAAGGTAAAGGTCGTAAGACCA- 10898
Query 111019 TTCCA-GCTCAAGAACTTTGGTTCAAAATCCTTGAATCACAAGTTGAAACTGGAACTCCT 111077
|| | |||||| | ||||||| |||||||| | || ||| ||||||| |||
Sbjct 10899 -TCAAGGCTCAAAAGCTTTGGTATTCCATCCTTGAGGCCCAGACTGAGACTGGAAACCCT 10957
Query 111078 TATATTTTGTATAAAGAT 111095
| || | || ||||||
Sbjct 10958 TTCATGCTTTACAAAGAT 10975
>seq4745
Length=15183
Score = 100 bits (110), Expect = 7e-16
Identities = 136/190 (72%), Gaps = 0/190 (0%)
Strand=Plus/Minus
Query 131787 TTCCTGCAATTAAAAAGAAAGCAGAATGGGCTATTAAATGGATTCAAGATGATTCCGCTA 131846
||||| ||||| ||||| || || |||||| ||| ||||||| | ||| | | |||
Sbjct 9204 TTCCTTGCATTAAGAAGAAGGCCGACTGGGCTGTTAGATGGATTGAGGATAAGAACTCTA 9145
Query 131847 ATTTTTCTACAAGACTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTT 131906
||| || | | || || || || ||| ||||||||||| ||||| ||| | |
Sbjct 9144 CCTTTGCTCAACGTCTCGTCGCATTCGCTGCCGTTGAAGGTATCTTCTTCAGTGGTTCCT 9085
Query 131907 TCTGTGCTATCTTTTGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATC 131966
|| |||| || ||||| ||||||||||| |||||| |||| ||| | || |||||
Sbjct 9084 TCGCCTCTATTTTCTGGCTCAAGAAGCGTGGCTTGATGGCTGGTCTCACCTTTTCCAACG 9025
Query 131967 AATTCATCTC 131976
| |||||||
Sbjct 9024 AGCTCATCTC 9015
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1186701111643545
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |