Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20echinophila_20[genbank_20GCA_5F000812885.1_202014-12- 31] 7,345 sequences; 40,250,382 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq4887 167 6e-36 seq4745 100 7e-16 >seq4887 Length=16554 Score = 167 bits (184), Expect = 6e-36 Identities = 520/798 (65%), Gaps = 9/798 (1%) Strand=Plus/Plus Query 110304 TATTTTGGTTTCAAAACTCTTGAACGTGCTTATTTACTTCGTGTCAATGGCGAGATCATT 110363 || || || ||||| |||||||| || | || | || ||| || | || | | | Sbjct 10181 TACTTCGGATTCAAGACTCTTGAGCGATCATACCTCCTCCGTCTCGACGGAAATGTTGCT 10240 Query 110364 GAACGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATTAAA 110423 |||||||| ||||| ||| | | |||||||| |||||||||| || |||||||| || Sbjct 10241 GAACGTCCACAACAAATGATCATGCGTGTTGCCGTTGGTATTCACGGTGATGATATTGAA 10300 Query 110424 GCTGTTATTGAATGTTATGATGTATTAAGTAAAAAGAAAGCTATTCATGCTACTCCTACC 110483 || || ||| || | | | || || | || || ||| |||| || Sbjct 10301 AGTGCCATCGAAACATACAACTTGATGTCCAACAAATACTTTACACACGCTTCTCCAACA 10360 Query 110484 CTATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCTTTCTTCTAGGAATTAAC 110543 || || || || ||| | || | | || ||||| ||| | | || || Sbjct 10361 CTCTTCTCTGCGGGTACTCCACAGGCTCAGCTTTCATCATGCTTCCTTATTGATATGAAG 10420 Query 110544 GATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAAC-TGCTCTTATTTCTAAAAA 110602 || ||| |||||| ||||| |||||| || || |||| |||| | ||||| || || Sbjct 10421 GAGGATAGTATTGATGGTATCTATGATACT-TTGAAGATTTGTGCTATGATTTCAAAGAA 10479 Query 110603 CTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATATCGCAAC 110662 | |||| || |||||| | || | || || || | | || || | || ||| Sbjct 10480 CGCTGGTGGTATTGGTCTCAACATCCACAGAATCCGTGCTACTGGTGCCTACATTGCAGG 10539 Query 110663 AGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAAA 110722 | || ||| || | || | ||||| ||| | |||| |||||| |||| || | Sbjct 10540 CACAAACGGTAACTCTAACGGTATCGTTCCTATGCTTCGAGTTTTCAACAACACCGCTAG 10599 Query 110723 ATATGTGAATCAAGGTGGT---AAGAGAAATGGCTCATTTGCTATCTATCTCGAACCTTG 110779 |||||| | ||||||||| ||| | ||| ||||||| | || || ||||| || Sbjct 10600 ATATGTCGACCAAGGTGGTAACAAGCGCCCTGGTGCATTTGCCGTTTACCTTGAACCATG 10659 Query 110780 GCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACAAAG 110839 |||| | ||| | ||||| ||||| || || || || || || || || ||| || Sbjct 10660 GCATGCGGATGTCTTTGAGTTCTTGGACCTCCGAAAGAACCACGGCAAAGAGGAAGTTAG 10719 Query 110840 AGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCAAGA 110899 |||||| ||| | || ||||| | |||||| ||||| | |||||||| |||||| || | Sbjct 10720 AGCACGCGATCTCTTCTATGCCCTCTGGATTCCAGATCTCTTCATGAAGCGTGTTGAAAA 10779 Query 110900 AAATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGTATATGG 110959 || || ||| | || ||||| ||| | | ||| || | ||||||| ||||| Sbjct 10780 GAACGGAGACTGGACACTCATGTGCCCTAACGAATGTCCAGGCTTGGCTGATGTCTATGG 10839 Query 110960 AAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAAGGCAAGTTTCGCAA-ACAAA 111018 | || || || | || || ||| || || | | |||| || ||| || || | Sbjct 10840 TGATGAATTCGAGGCTCTCTATGAAGGTTACGAGAGACAAGGTAAAGGTCGTAAGACCA- 10898 Query 111019 TTCCA-GCTCAAGAACTTTGGTTCAAAATCCTTGAATCACAAGTTGAAACTGGAACTCCT 111077 || | |||||| | ||||||| |||||||| | || ||| ||||||| ||| Sbjct 10899 -TCAAGGCTCAAAAGCTTTGGTATTCCATCCTTGAGGCCCAGACTGAGACTGGAAACCCT 10957 Query 111078 TATATTTTGTATAAAGAT 111095 | || | || |||||| Sbjct 10958 TTCATGCTTTACAAAGAT 10975 >seq4745 Length=15183 Score = 100 bits (110), Expect = 7e-16 Identities = 136/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 131787 TTCCTGCAATTAAAAAGAAAGCAGAATGGGCTATTAAATGGATTCAAGATGATTCCGCTA 131846 ||||| ||||| ||||| || || |||||| ||| ||||||| | ||| | | ||| Sbjct 9204 TTCCTTGCATTAAGAAGAAGGCCGACTGGGCTGTTAGATGGATTGAGGATAAGAACTCTA 9145 Query 131847 ATTTTTCTACAAGACTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTT 131906 ||| || | | || || || || ||| ||||||||||| ||||| ||| | | Sbjct 9144 CCTTTGCTCAACGTCTCGTCGCATTCGCTGCCGTTGAAGGTATCTTCTTCAGTGGTTCCT 9085 Query 131907 TCTGTGCTATCTTTTGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATC 131966 || |||| || ||||| ||||||||||| |||||| |||| ||| | || ||||| Sbjct 9084 TCGCCTCTATTTTCTGGCTCAAGAAGCGTGGCTTGATGGCTGGTCTCACCTTTTCCAACG 9025 Query 131967 AATTCATCTC 131976 | ||||||| Sbjct 9024 AGCTCATCTC 9015 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186701111643545