Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20echinophila_20[genbank_20GCA_5F000812885.1_202014-12- 31] 7,345 sequences; 40,250,382 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq894 98.7 7e-16 seq5062 87.8 1e-12 >seq894 Length=6424 Score = 98.7 bits (108), Expect = 7e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | ||| | |||||| || | |||||||| ||||| ||||||||||| || Sbjct 3211 CCACCACGGAGACGAAGCACCAAGTGCAAGGTGCTCTCCTTTTGAATGTTGTAATCCGAA 3270 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || | | || |||||||| ||||| || |||||||| || || || || | || Sbjct 3271 AGAGTTCTACCATCCTCCAATTGCTTTCCAGCGAAAATCAATCGTTGTTGGTCGGGTGGG 3330 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || || ||||| || || ||| | || | || | ||| || |||||||| Sbjct 3331 ATGCCCTCCTTGTCTTGGATCTT-TGTCTTGACGTTATCAATGGTATCTGACGATTCCAC 3389 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||| || || || || || || || || |||||||| ||||| Sbjct 3390 CTCTAACGTAATTGTCTTTCCAGTCAAAGTCTTAACAAAGATTTGCAT 3437 >seq5062 Length=19932 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 |||| || | ||||| | ||||| || ||||| ||| || || ||||||||||||| Sbjct 11076 CACCTCCACGTAAACGCAGGACCAAGTGAAGAGTCGACTCCTTCTGGATGTTGTAATCGG 11135 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 | || ||||| | || || | ||| || ||||| || || | ||| || ||||| | | Sbjct 11136 AAAGAGTGCGGCCATCTTCGAGTTGCTTGCCGGCGAAGATTAGACGTTGTTGATCAGGTG 11195 Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699 | | || || || || || || |||| |||| || | |||||| || || Sbjct 11196 GGATTCCCTCCTTATCCTGGATCTT-GGTTTTGACATTATCGATAGTGTCGGAGGACTCG 11254 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || | ||||| |||||||| || | || || || ||||||||||| Sbjct 11255 ACCTCTAGGGTGATGGTTTTACCCGTGAGGGTCTTGACGAAGATCTGCAT 11304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328674575342400