Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rutstroemia_20echinophila_20[genbank_20GCA_5F000812885.1_202014-12-
31] 7,345 sequences; 40,250,382 total letters
Query= NC_025960.1
Length=148981
Score E
Sequences producing significant alignments: (Bits) Value
seq894 107 2e-18
seq5062 93.3 4e-14
>seq894
Length=6424
Score = 107 bits (118), Expect = 2e-18
Identities = 157/222 (71%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961
||| | ||| | ||||||||||| | ||||| ||||||||||||||||| || |||
Sbjct 3444 ACGAAGGCGAAGAACCAAATGTAAAGTCGACTCCTTTTGAATGTTGTAGTCCGACAGGGT 3503
Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021
||| ||| || | ||| ||||| | |||| ||||| |||||||| || || |||||
Sbjct 3504 ACGGCCATCCTCCAACTGCTTACCAGCGAAGATGAGACGTTGTTGATCAGGTGGAATGCC 3563
Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081
||| || || ||| || || | | || | |||||| | | ||| || || |
Sbjct 3564 TTCCTTGTCTTGAATCTTGCTCTTTACGTTGTCGATAGTATCAGATGACTCAACCTCCAA 3623
Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123
|| | || || || || ||||| || | ||||||||||||
Sbjct 3624 AGTGATTGTCTTTCCGGTAAGAGTCTTGACGAAAATCTGCAT 3665
>seq5062
Length=19932
Score = 93.3 bits (102), Expect = 4e-14
Identities = 156/226 (69%), Gaps = 0/226 (0%)
Strand=Plus/Plus
Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961
||| || |||| ||||| || | | ||||| || || |||||||| ||| | ||
Sbjct 11083 ACGTAAACGCAGGACCAAGTGAAGAGTCGACTCCTTCTGGATGTTGTAATCGGAAAGAGT 11142
Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021
|| ||||||||| || || |||| |||||||||| |||||||| || || || ||
Sbjct 11143 GCGGCCATCTTCGAGTTGCTTGCCGGCGAAGATTAGACGTTGTTGATCAGGTGGGATTCC 11202
Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081
|| ||||| || || ||| | | || | ||| |||| | ||| || || |
Sbjct 11203 CTCCTTATCCTGGATCTTGGTTTTGACATTATCGATAGTGTCGGAGGACTCGACCTCTAG 11262
Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATGACT 132127
|| | |||||||| || || || || | ||| ||||||||||||
Sbjct 11263 GGTGATGGTTTTACCCGTGAGGGTCTTGACGAAGATCTGCATGACT 11308
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 476567441134200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |