Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rutstroemia_20echinophila_20[genbank_20GCA_5F000812885.1_202014-12-
31] 7,345 sequences; 40,250,382 total letters
Query= NC_026268.1
Length=139132
Score E
Sequences producing significant alignments: (Bits) Value
seq5062 82.4 7e-11
seq4887 82.4 7e-11
>seq5062
Length=19932
Score = 82.4 bits (90), Expect = 7e-11
Identities = 144/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233
|||||| | || || || || | || || ||| | ||||| | || ||||| ||
Sbjct 11305 CATGCAGATCTTCGTCAAGACCCTCACGGGTAAAACCATCACCCTAGAGGTCGAGTCCTC 11246
Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293
||| |||||||| | || ||| || || ||||| ||||| || || || |||||
Sbjct 11245 CGACACTATCGATAATGTCAAAACCAAGATCCAGGATAAGGAGGGAATCCCACCTGATCA 11186
Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353
||| | || || | || |||||| ||||||||||||| | | | | |||||||||
Sbjct 11185 ACAACGTCTAATCTTCGCCGGCAAGCAACTCGAAGATGGCCGCACTCTTTCCGATTACAA 11126
Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGT 25383
|| || || || || || |||| || ||
Sbjct 11125 CATCCAGAAGGAGTCGACTCTTCACTTGGT 11096
>seq4887
Length=16554
Score = 82.4 bits (90), Expect = 7e-11
Identities = 171/255 (67%), Gaps = 0/255 (0%)
Strand=Plus/Minus
Query 138144 GTTGAGGCCGATGCCGCCTCCGTGTTTAGATATCATGGCACAATCGTTGAGAGTTCTATA 138203
|||||| || || || || ||| || || ||||| |||||| || | ||| |||
Sbjct 10501 GTTGAGACCAATACCACCAGCGTTCTTTGAAATCATAGCACAAATCTTCAAAGTATCATA 10442
Query 138204 GATGCCGTTTATGCTGTCTTCCTGGATGTTGAGTAGATAACACGACGACATTTGAGGCAT 138263
||| || | || || || |||| || | | || | || || || | |||| |
Sbjct 10441 GATACCATCAATACTATCCTCCTTCATATCAATAAGGAAGCATGATGAAAGCTGAGCCTG 10382
Query 138264 TTTCATGCCAGCCGAGAATAGAGTGGGACTAGCGTGGGTAAACATTTTCGAGCGCATCAA 138323
| | || || ||||| || || ||| |||||| ||||| ||| | ||||||
Sbjct 10381 TGGAGTACCCGCAGAGAAGAGTGTTGGAGAAGCGTGTGTAAAGTATTTGTTGGACATCAA 10322
Query 138324 TCTATATGACTCGATCGCACTCTCGATATCATCACCATGAATCTGAAGAGCGACACGCAT 138383
| |||| ||||| ||||| || ||||||||||| ||||| || || ||||||||
Sbjct 10321 GTTGTATGTTTCGATGGCACTTTCAATATCATCACCGTGAATACCAACGGCAACACGCAT 10262
Query 138384 CAGCATGTGTTGAGG 138398
| ||| ||||| ||
Sbjct 10261 GATCATTTGTTGTGG 10247
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445053534770400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |