Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20echinophila_20[genbank_20GCA_5F000812885.1_202014-12- 31] 7,345 sequences; 40,250,382 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq5062 82.4 7e-11 seq4887 82.4 7e-11 >seq5062 Length=19932 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 |||||| | || || || || | || || ||| | ||||| | || ||||| || Sbjct 11305 CATGCAGATCTTCGTCAAGACCCTCACGGGTAAAACCATCACCCTAGAGGTCGAGTCCTC 11246 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 ||| |||||||| | || ||| || || ||||| ||||| || || || ||||| Sbjct 11245 CGACACTATCGATAATGTCAAAACCAAGATCCAGGATAAGGAGGGAATCCCACCTGATCA 11186 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 ||| | || || | || |||||| ||||||||||||| | | | | ||||||||| Sbjct 11185 ACAACGTCTAATCTTCGCCGGCAAGCAACTCGAAGATGGCCGCACTCTTTCCGATTACAA 11126 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGT 25383 || || || || || || |||| || || Sbjct 11125 CATCCAGAAGGAGTCGACTCTTCACTTGGT 11096 >seq4887 Length=16554 Score = 82.4 bits (90), Expect = 7e-11 Identities = 171/255 (67%), Gaps = 0/255 (0%) Strand=Plus/Minus Query 138144 GTTGAGGCCGATGCCGCCTCCGTGTTTAGATATCATGGCACAATCGTTGAGAGTTCTATA 138203 |||||| || || || || ||| || || ||||| |||||| || | ||| ||| Sbjct 10501 GTTGAGACCAATACCACCAGCGTTCTTTGAAATCATAGCACAAATCTTCAAAGTATCATA 10442 Query 138204 GATGCCGTTTATGCTGTCTTCCTGGATGTTGAGTAGATAACACGACGACATTTGAGGCAT 138263 ||| || | || || || |||| || | | || | || || || | |||| | Sbjct 10441 GATACCATCAATACTATCCTCCTTCATATCAATAAGGAAGCATGATGAAAGCTGAGCCTG 10382 Query 138264 TTTCATGCCAGCCGAGAATAGAGTGGGACTAGCGTGGGTAAACATTTTCGAGCGCATCAA 138323 | | || || ||||| || || ||| |||||| ||||| ||| | |||||| Sbjct 10381 TGGAGTACCCGCAGAGAAGAGTGTTGGAGAAGCGTGTGTAAAGTATTTGTTGGACATCAA 10322 Query 138324 TCTATATGACTCGATCGCACTCTCGATATCATCACCATGAATCTGAAGAGCGACACGCAT 138383 | |||| ||||| ||||| || ||||||||||| ||||| || || |||||||| Sbjct 10321 GTTGTATGTTTCGATGGCACTTTCAATATCATCACCGTGAATACCAACGGCAACACGCAT 10262 Query 138384 CAGCATGTGTTGAGG 138398 | ||| ||||| || Sbjct 10261 GATCATTTGTTGTGG 10247 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445053534770400