Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20echinophila_20[genbank_20GCA_5F000812885.1_202014-12- 31] 7,345 sequences; 40,250,382 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq4745 123 4e-22 >seq4745 Length=15183 Score = 123 bits (136), Expect = 4e-22 Identities = 210/302 (70%), Gaps = 17/302 (6%) Strand=Plus/Minus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||| | |||||| || ||||||||||| ||||| |||||||| ||||| |||| Sbjct 9592 GATCTGGCAGATGTAC-AAGAAGGCCGAGGCATCCTTCTGGACCGCAGAGGAAATCGATT 9534 Query 1455835 TC-----GGCGC----CGACACGGTCCACTGGGTGTCGCTGAGCGACGACGAGCGCCATT 1455885 | || | |||| | | || | || | ||||| ||||| | | Sbjct 9533 TGTCAAAGGATCTTCACGACTGGAACAACAGA------CTCAATGACGATGAGCGTTACT 9480 Query 1455886 TCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTG 1455945 ||||| ||||| ||||| || || |||||| |||||| || || || ||||| Sbjct 9479 TCATCTCTCACGTTCTCGCATTCTT-CGCCGCATCCGATGGAATTGTCAATGAAAACCTT 9421 Query 1455946 GCCGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAG 1456005 | || ||||| | |||||| ||| | || || ||||| | || ||||| ||||| Sbjct 9420 GTCGAACGCTTCAGTGGAGAGGTACAAATTCCGGAAGCACGATGCTTCTACGGTTTCCAA 9361 Query 1456006 ATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAG 1456065 ||| || |||||||||||||| ||||| |||||||| || ||||| || ||| ||||| Sbjct 9360 ATCATGATGGAAAACATCCACTCGGAAACATACTCGCTTCTCATCGATACATACATCAAG 9301 Query 1456066 GA 1456067 || Sbjct 9300 GA 9299 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177102761249890