Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rutstroemia_20echinophila_20[genbank_20GCA_5F000812885.1_202014-12-
31] 7,345 sequences; 40,250,382 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq4887 333 4e-86
seq4745 132 7e-26
>seq4887
Length=16554
Score = 333 bits (368), Expect = 4e-86
Identities = 1325/2065 (64%), Gaps = 49/2065 (2%)
Strand=Plus/Minus
Query 68374 GTAAACTGAATGGGTGAGGATGCGGGTTTTGTACGTAGATAGTACATACCGGTTTTCAGA 68433
|| || ||||| |||| ||| || | | ||||| ||||||||||| || || || |||
Sbjct 12003 GTGAATTGAATTGGTGCGGAAGCAGCCATAGTACGGAGATAGTACATTCCAGTCTTGAGA 11944
Query 68434 CCTAGACTCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATA 68493
|||| ||||||| |||||||| || | ||| | || || ||
Sbjct 11943 CCTAATTTCCATCCAGCAAAATGCATGGAAGTGATCTTGCCCATTGTAGGGTCCTTCATG 11884
Query 68494 TGAATATTCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATA 68553
|| || ||||| |||||| ||||||||||||||| || | ||||| ||||| | | |
Sbjct 11883 TGGATGTTCATTGATTGAGATTGATCGATGAAAGCACCACGGTCTGCGGCCATCTGAACA 11824
Query 68554 ATACTCTTTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATATCATCTGGAAGG 68613
|| | ||||| |||||||||| |||||| | | |||| ||| |||| | |
Sbjct 11823 ATGTTTCGTTGAGAGATTTCCCAAACAGTCTTGTAGAGAGCCTTGAGTTCAGCTGGGATG 11764
Query 68614 CTCGTA---TTTTGAATGGATCCACCATCGGATATAATTATATTCTTGATCTCATCATTC 68670
| | | |||||||| |||||||| || | || || ||||| || | ||| |
Sbjct 11763 TTGGGAATGTTTTGAATAGATCCACCGTCAGCGATGATGCGGTTCTTCATGTTGTCAGAC 11704
Query 68671 CACAATTTTCTCTCCGTTAAAACTCTAAGGAGATGCGGATTAACTATTTGAAATTCCCCA 68730
|| | | | || ||| | | || || || || || | ||| || || ||
Sbjct 11703 CAAAGTCCCATGTCGACCAAATCCTTGAGAAGCCATGGGTTGACAACTTGGAACTCTCCG 11644
Query 68731 GATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTATTTCCC 68790
| | ||| | ||| | || || || || ||||| || | | |||| || ||
Sbjct 11643 GCCAGCACACGACGGGAATAGATGTTGGAAGTGTATGGCTCGAAACATTCGTTGAAACCG 11584
Query 68791 AGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCA 68850
|||||||||| || |||||||||||||| || || | ||||| || | || ||||
Sbjct 11583 AGAATTTGAGATGTACTGGCAGTTGGCATAGGAGCAACAAGCAAACTGTTGCGAATACCA 11524
Query 68851 TGTGTTATGATTTTATCTTTTAGATGTTTCCAATCCCAAAGATCAGATGGTACAACATTC 68910
||| |||| | || || | ||||||||| ||||| | || |||| |
Sbjct 11523 TGTTGCTTGATAGATTGCTTGAGGCTATCCCAATCCCAGAGATCTGTAGGAGTAACACCC 11464
Query 68911 CAAAGATCGTATTGTAGAATTCCGTT---ACTTGCATATGATCCATTATATGTTTCATAA 68967
|| | ||| ||||| || || || | || | || || | || || |||||
Sbjct 11463 CACATATCATATTGAAGTTCACCCTTGGAAACTGGA---GAACCTTCGTAGGTCTCATAT 11407
Query 68968 GGTCCTTCCTGTTCAGCTAGTTCACAACTTGCC---TCTAATGCACCGTAATAAATTGTT 69024
|| || || | || | || ||| | || || ||||||| || || ||
Sbjct 11406 GGGCCCAACTCCTTGGCAA--TCTGAACAGACGAAGTC-AAGGCACCGTGGTAGATGGTC 11350
Query 69025 TCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCGAATGGATAATGTAAAAGA 69084
|||||||||| | || |||| || || || | ||||||||| || | | |
Sbjct 11349 TCGAAAATCTGGATGTTAAGATGTTTGGCCTCAGGTGAATCGAATGGCAAACGGAGAGCC 11290
Query 69085 ATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGTCTCTTATTTGAA 69144
| || ||||| || | |||||||| |||| | | ||||||| || | | ||
Sbjct 11289 AGGAAGGCATCAGCAAGACCCTGAACACCAACAGCAATAGGTCGGTGACGGA-AGTTACT 11231
Query 69145 CTTTC-AGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTAAGATTTCGGAC 69203
||||| ||||||||| | |||||| || || || || ||||| || || | |||| |||
Sbjct 11230 CTTTCTAGCTTCTGGGACAGGATAGTAGTTGATGTCAATAATCTTGTTCAAGTTTCTGAC 11171
Query 69204 TACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAA-------TCGTCCATCTATAA 69256
|| |||| ||| || || | || || | |||||| | || |||| | | |
Sbjct 11170 AACAACTTGAACGACCTCATGAAGCTTTTGGAAATCATAAGTTCCCTCAGCCATGT-TGA 11112
Query 69257 CAAACATATTCAGTGCTACAGATGCTAGATTACAAACTGCTACCTCATTAGAATTTGCA- 69315
|||| | || || | ||| || | ||||| || ||||||| | ||||
Sbjct 11111 CAAAGGTTGGGAGAGCAATAGAAGCCAAGTTACAGCAAGCAACCTCATCCGG---TGCAG 11055
Query 69316 --TATTGTATTATCTCTGTACATAGATTA---CTACATTTGATAGTCCCCAGATTTTGCT 69370
|||| | || ||||| || | || |||| ||| || || || || | |
Sbjct 11054 AGTATTCGACGATTTCTGTGCACAAGTTGGAGCTACG---GATTGTGCCGAGGTTCTTTT 10998
Query 69371 GATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCT 69430
| |||||||||||||| || || || |||||||| || || || | ||||| ||| |||
Sbjct 10997 GGTTACTCTTTTTGTTGCAAGCATCTTTGTAAAGCATGAAAGGGTTTCCAGTCTCAGTCT 10938
Query 69431 GAGATTCGATAATAGATTTCCAAACGACCCTAGCATTTATTACGGTCTTGTAACGCTTCT 69490
| | || | || || | ||||| ||| || || |||||| || ||
Sbjct 10937 GGGCCTCAAGGATGGAATACCAAAGCTTTTGAGCCTTGAT---GGTCTTACGACCTTTAC 10881
Query 69491 CTTTT---TCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATC 69547
||| | || || | ||| || ||||||||||| || | |||||| |||| |
Sbjct 10880 CTTGTCTCTCGTAACCTTCATAGAGAGCCTCGAATTCATCACCATAGACATCAGCCAAGC 10821
Query 69548 CAGGACATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAA 69607
| |||||||| || || ||||| | || ||| | | | | | ||| || ||||| |
Sbjct 10820 CTGGACATTCGTTAGGGCACATGAGTGTCCAGTCTCCGTTCTTTTCAACACGCTTCATGA 10761
Query 69608 ATAGATCGGGAATCCAAAGAGCTATA-AAGAGATCTCTGGTTCTATTTTCTTCATTTCCT 69666
| ||||| |||||||| || || ||| |||||||| | | |||| ||| || || ||
Sbjct 10760 AGAGATCTGGAATCCAGAGGGC-ATAGAAGAGATCGCGTGCTCTAACTTCCTCTTTGCCG 10702
Query 69667 GTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATC 69726
|| ||| || || | ||||| | | ||| | |||||||||||| || || |
Sbjct 10701 TGGTTCTTTCGGAGGTCCAAGAACTCAAAGACATCCGCATGCCATGGTTCAAGGTAAACG 10642
Query 69727 GCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAG 69786
|| | | || || || || || || || || || | ||||| || ||||| || |
Sbjct 10641 GCAAATGCACCAGGGCGCTTGTTACCACCTTGGTCGACATATCTAGCGGTGTTGTTGAAA 10582
Query 69787 ACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCT 69846
|||| ||||| |||| ||||| ||||| ||||| ||||| || | ||| || ||
Sbjct 10581 ACTCGAAGCATAGGAACGATACCGTTAGAGTTACCGTTTGTGCCTGCAATGTAGGCACCA 10522
Query 69847 CTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCA 69906
| || || || | || ||||| || || || || | || || || | ||||
Sbjct 10521 GTAGCACGGATTCTGTGGATGTTGAGACCAATACCACCAGCGTTCTTTGAAATCATAGCA 10462
Query 69907 CAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAA 69966
||| ||||| || ||||| ||||| || || ||||| || |||| | || ||| ||
Sbjct 10461 CAAATCTTCAAAGTATCATAGATACCATCAATACTATCCTCCTTCATATCAATAAGGAAG 10402
Query 69967 CAGCTAGACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTG 70026
|| || | ||| ||| ||| |||||| || | ||| ||||| ||||| ||
Sbjct 10401 CATGATGAAAGCTGAGCCTGTGGAGTACCCGCAGAGAAGAGTGTTGGAGAAGCGTGTGTA 10342
Query 70027 AACCATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATC-CCACTGATG 70085
|| |||| | || | || ||||||||||| || || ||| ||||| ||| | ||
Sbjct 10341 AAGTATTTGTTGGACATCAAGTTGTATGTTTCGATGGCACTTTCAATATCATCACCG-TG 10283
Query 70086 AATTCCTATCGCGACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTATTATTTAT 70145
||| || | || |||||||| | ||| || || || ||||| | || | |
Sbjct 10282 AATACCAACGGCAACACGCATGATCATTTGTTGTGGACGTTCAGCAACATTTCCGTCGAG 10223
Query 70146 TTTCAACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCT 70205
| ||||||||| || ||||| || || || || || | ||| |||||||||
Sbjct 10222 ACGGAGGAGGTATGATCGCTCAAGAGTCTTGAATCCGAAGTATTGGTAGTTAAAGTCTCT 10163
Query 70206 TTCGTAAATAATAACAGAATTTAGTTTATCCTTATATTTGGTAACTATATCCATAACAGT 70265
|| |||| || |||| || |||| ||| || | | |||| | || | || |
Sbjct 10162 GTCATAAACGATTGCAGAGTTGAGTTCTGCCTCATGTCTCATAAC-ACATTCGTATGTTT 10104
Query 70266 AGGTG-AGATAATCGGAGATCGTTTACCATTTTTAGGATTAACATAGTTGAATAAATCTT 70324
|| || || |||||| | |||||||| ||||| |||| | ||| ||
Sbjct 10103 CCTTGCTAATCATAGGAGATTTGGTGCCATTTTTGGGATTCGTGTAGTGGTATAGGTCGC 10044
Query 70325 CCATTACATCACTAAATAGtttttttGTTTCCTTGTGTAAATTTGATATGGCTATTCTGG 70384
|| |||| ||| | || || |||| ||||| | ||| || | || || | |
Sbjct 10043 TAATGACATGGGAGAATTGCTTCTTGGTTTGTTTGTGAAGATTGGAGACTGCAATACGAG 9984
Query 70385 CTGCTAGAATAGCATAGTCAGGATG 70409
| |||||||| |||||||| |||||
Sbjct 9983 CAGCTAGAATGGCATAGTCGGGATG 9959
>seq4745
Length=15183
Score = 132 bits (146), Expect = 7e-26
Identities = 231/333 (69%), Gaps = 5/333 (2%)
Strand=Plus/Plus
Query 39839 GTTTCTATAGCATTAAAGAGATAATGT-TTTTCATCACTATCTTTAACATATGTATCTAT 39897
|| || |||||||| |||||||| ||| |||| | | || || | |||||||| ||
Sbjct 9260 GTATCAATAGCATTGAAGAGATA-TGTCTTTTGAGCTTGTTCCTTGATGTATGTATCGAT 9318
Query 39898 TAACAGACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACA 39957
| || || |||| || ||||||||||| ||| || || || ||||| || ||
Sbjct 9319 GAGAAGCGAGTATGTTTCCGAGTGGATGTTTTCCATCATGATTTGGAAACCGTAGAAGCA 9378
Query 39958 TCTTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTAT 40017
|| |||||| | ||||||||||||| || || | ||| | | |||||||| || ||
Sbjct 9379 TCGTGCTTCCGGAATTTGTACCTCTCCACTGAAGCGTTCGACAAGGTTTTCATTGACAAT 9438
Query 40018 TCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGT 40077
|||||| ||||| || ||||| | || || || || || |||||| |
Sbjct 9439 TCCATCGGATGCGGCGAAGAATGCGAGAACGTGAGAGATGAAGTAACGCTCATCGTCATT 9498
Query 40078 CAAT---TTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAA 40134
| | || |||||||| | | ||| ||||| | ||| | ||| || || ||||| ||
Sbjct 9499 GAGTCTGTTGTTCCAGTCGTGAAGATCCTTTGACAAATCGATTTCCTCTGCGGTCCAGAA 9558
Query 40135 CGACGCCTCTGCCTTTTTGTACATGTTCCATAT 40167
|| ||||| ||||| |||||||| | ||| ||
Sbjct 9559 GGATGCCTCGGCCTTCTTGTACATCTGCCAGAT 9591
Score = 120 bits (132), Expect = 4e-22
Identities = 305/460 (66%), Gaps = 8/460 (2%)
Strand=Plus/Plus
Query 39310 TGACATAACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCC 39369
|| |||||| || ||||||||| || ||||| || |||||||| || || || |||||
Sbjct 8675 TGCCATAACACCAGCTTTTTGGTAGTCGCCAACTCGCTTCTCGAAGAAGTTGGTCTTGCC 8734
Query 39370 TTCCAATGATATATTTTCCATGAAATCAAACGGATTAGTTG--CATTATAtttttttttA 39427
| | | || || ||||||||||| || || ||||| | || | || | || | |
Sbjct 8735 TGCGAGAGAAATGTTTTCCATGAAGTCGAATGGATTGGCTGATCGGTAAACCTTCTCATT 8794
Query 39428 AATCCTAATTCTGAAATCAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCA 39487
| || | | || | | ||||| || || || |||||| ||||||| ||
Sbjct 8795 A--CCAAGAGCAACAAGAAGACGGTCTGCGACGAACTCAATGTATTGCTTCATCAAATCC 8852
Query 39488 CAATTCATTCCTATGAGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCT 39547
| ||||| || | ||| | ||| ||||| ||||| | || |||| || || |
Sbjct 8853 GAGTTCATGCCAAGGAGAGCACATGGAAGAGCTTCCGTCAAGAATTCTTGCTCAATCTGG 8912
Query 39548 ACGGCCTCTGTTATTATCGATGTT--ACTACCTCATCACTCGGTGGATGCAATAAATGTT 39605
|| |||||||| || | || | || | | | || || ||||| || ||
Sbjct 8913 ACAGCCTCTGTAATAAC--ATCCTGAACGGCTTGTTTGCTTGGGCGATGCTTCAAGTGCG 8970
Query 39606 TAAACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAG 39665
|| | | |||||||||||| ||| || ||||| || | || | ||||| |
Sbjct 8971 AGAAGAGCAGGCAGGCGAAGTCGGTATGAAGACCCTCGTCACGGGAGATGAGCTCGTTGG 9030
Query 39666 AAAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATC 39725
|||| ||||| |||| ||| | |||||||| |||||||| || || | || || || |
Sbjct 9031 AAAAGGTGAGACCAGCCATCAAGCCACGCTTCTTGAGCCAGAAAATAGAGGCGAAGGAAC 9090
Query 39726 CAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAG 39765
|| |||||||| ||||| || || || ||||| || ||
Sbjct 9091 CACTGAAGAAGATACCTTCAACGGCAGCGAATGCGACGAG 9130
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 686845733185800
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