Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rutstroemia_20echinophila_20[genbank_20GCA_5F000812885.1_202014-12-
31] 7,345 sequences; 40,250,382 total letters
Query= NC_027923.1
Length=132831
Score E
Sequences producing significant alignments: (Bits) Value
seq4887 120 3e-22
seq894 95.1 1e-14
>seq4887
Length=16554
Score = 120 bits (132), Expect = 3e-22
Identities = 328/498 (66%), Gaps = 11/498 (2%)
Strand=Plus/Minus
Query 131603 GGACATTCGCTGGGACACATTAGCGACCACACGCCGTTCTGTTCAACTCGCTTCATAAAC 131662
||||||||| | || ||||| || | ||| | ||||||| |||||| |||||||| ||
Sbjct 10818 GGACATTCGTTAGGGCACATGAGTGTCCAGTCTCCGTTCTTTTCAACACGCTTCATGAAG 10759
Query 131663 AAATCCGGCACCCATAACGCGTACAACAGATCTCTAGCTTT---TTTCTCTTCTGTACCC 131719
| ||| || | ||| | || || || ||||| | ||| | || ||||| || ||
Sbjct 10758 AGATCTGGAATCCAGAGGGCATAGAAGAGATCGCGTGCTCTAACTTCCTCTT-TG---CC 10703
Query 131720 ATAAtttttttCAAATTTAAA-AAGTCCAAAATGTCCGCATGCCAGGGTTCCAAATACAC 131778
| || ||| | | || || || || | ||||||||||| ||||| | || ||
Sbjct 10702 GTGGTTCTTTCGGAGGTCCAAGAACTCAAAGACATCCGCATGCCATGGTTCAAGGTAAAC 10643
Query 131779 TGCCATTGCGCCTTTGCGC---TTACCGCCTTGATTAACATGACGAACCATGTTGTTGTA 131835
|| | ||| || |||| ||||| ||||| | |||| | | | |||||||| |
Sbjct 10642 GGCAAATGCACCAGGGCGCTTGTTACCACCTTGGTCGACATATCTAGCGGTGTTGTTGAA 10583
Query 131836 TACGCGCAACATGGGCTCCAAACCGTTGGCGTTTCCATTGGTGCTCTTAATGTAGCTGCC 131895
|| || | ||| || | | |||||| | ||| || || |||| ||||||| ||
Sbjct 10582 AACTCGAAGCATAGGAACGATACCGTTAGAGTTACCGTTTGTGCCTGCAATGTAGGCACC 10523
Query 131896 ATTGGCTCTGATTTTGTGAACGTTGAGTCCAATACCTCCGCCGTATTTAGAGATTAGTGC 131955
| | || | |||| |||| | |||||| |||||||| || ||| || || || | ||
Sbjct 10522 AGTAGCACGGATTCTGTGGATGTTGAGACCAATACCACCAGCGTTCTTTGAAATCATAGC 10463
Query 131956 GCATTTGGTTAGAGTGTTATAGATACCTTCCACGCTGTCCGCGGCAATGTCGACTAAAAA 132015
|| | | | ||| | ||||||||| || | || ||| | || || | | ||
Sbjct 10462 ACAAATCTTCAAAGTATCATAGATACCATCAATACTATCCTCCTTCATATCAATAAGGAA 10403
Query 132016 GCAAGAGGACAACTGTTGGTGAAATGTGCCGGCTGAAAACAATGTGGGGCTGGCGTGTGT 132075
||| || || | ||| || || || || || || | ||| || ||||||||
Sbjct 10402 GCATGATGAAAGCTGAGCCTGTGGAGTACCCGCAGAGAAGAGTGTTGGAGAAGCGTGTGT 10343
Query 132076 AAAAAGTTTTTTGGCCAT 132093
||| ||| |||| |||
Sbjct 10342 AAAGTATTTGTTGGACAT 10325
>seq894
Length=6424
Score = 95.1 bits (104), Expect = 1e-14
Identities = 147/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098
||||||||||| || || || |||||||| |||||||| || | | || | || ||
Sbjct 3457 ACCAAATGTAAAGTCGACTCCTTTTGAATGTTGTAGTCCGACAGGGTACGGCCATCCTCC 3516
Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158
| ||| ||||| ||| | |||||||| |||||||| || || | || || || ||
Sbjct 3517 AACTGCTTACCAGCGAAGATGAGACGTTGTTGATCAGGTGGAATGCCTTCCTTGTCTTGA 3576
Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218
|||||| | || | | | || | ||| || | | ||||| || | ||| || | ||
Sbjct 3577 ATCTTGCTCTTTACGTTGTCGATAGTATCAGATGACTCAACCTCCAAAGTGATTGTCTTT 3636
Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCATA 27248
|| || ||||| || || || || ||||||
Sbjct 3637 CCGGTAAGAGTCTTGACGAAAATCTGCATA 3666
Score = 95.1 bits (104), Expect = 1e-14
Identities = 139/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098
||||||||||| || || || || || || ||||||||| | |||| |||| ||
Sbjct 3685 ACCAAATGTAAAGTCGATTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCGTCCTCA 3744
Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158
|| || || || ||| | || | ||| |||||||| || || | |||||| |||||
Sbjct 3745 AGTTGCTTGCCAGCGAAGATCAAACGTTGTTGATCAGGGGGGATACCCTCCTTATCTTGA 3804
Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218
|||||| | || | | || | ||| || | | |||||| || ||||| |||| |||
Sbjct 3805 ATCTTGGTCTTAACATTGTCGATAGTATCCGAAGATTCAACCTCAAGAGTGATAGTCTTG 3864
Query 27219 CCCGTCAGAGTTTTCAC 27235
|| || ||||| || ||
Sbjct 3865 CCGGTGAGAGTCTTGAC 3881
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 424896361067640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |