Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20echinophila_20[genbank_20GCA_5F000812885.1_202014-12- 31] 7,345 sequences; 40,250,382 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq4887 120 3e-22 seq894 95.1 1e-14 >seq4887 Length=16554 Score = 120 bits (132), Expect = 3e-22 Identities = 328/498 (66%), Gaps = 11/498 (2%) Strand=Plus/Minus Query 131603 GGACATTCGCTGGGACACATTAGCGACCACACGCCGTTCTGTTCAACTCGCTTCATAAAC 131662 ||||||||| | || ||||| || | ||| | ||||||| |||||| |||||||| || Sbjct 10818 GGACATTCGTTAGGGCACATGAGTGTCCAGTCTCCGTTCTTTTCAACACGCTTCATGAAG 10759 Query 131663 AAATCCGGCACCCATAACGCGTACAACAGATCTCTAGCTTT---TTTCTCTTCTGTACCC 131719 | ||| || | ||| | || || || ||||| | ||| | || ||||| || || Sbjct 10758 AGATCTGGAATCCAGAGGGCATAGAAGAGATCGCGTGCTCTAACTTCCTCTT-TG---CC 10703 Query 131720 ATAAtttttttCAAATTTAAA-AAGTCCAAAATGTCCGCATGCCAGGGTTCCAAATACAC 131778 | || ||| | | || || || || | ||||||||||| ||||| | || || Sbjct 10702 GTGGTTCTTTCGGAGGTCCAAGAACTCAAAGACATCCGCATGCCATGGTTCAAGGTAAAC 10643 Query 131779 TGCCATTGCGCCTTTGCGC---TTACCGCCTTGATTAACATGACGAACCATGTTGTTGTA 131835 || | ||| || |||| ||||| ||||| | |||| | | | |||||||| | Sbjct 10642 GGCAAATGCACCAGGGCGCTTGTTACCACCTTGGTCGACATATCTAGCGGTGTTGTTGAA 10583 Query 131836 TACGCGCAACATGGGCTCCAAACCGTTGGCGTTTCCATTGGTGCTCTTAATGTAGCTGCC 131895 || || | ||| || | | |||||| | ||| || || |||| ||||||| || Sbjct 10582 AACTCGAAGCATAGGAACGATACCGTTAGAGTTACCGTTTGTGCCTGCAATGTAGGCACC 10523 Query 131896 ATTGGCTCTGATTTTGTGAACGTTGAGTCCAATACCTCCGCCGTATTTAGAGATTAGTGC 131955 | | || | |||| |||| | |||||| |||||||| || ||| || || || | || Sbjct 10522 AGTAGCACGGATTCTGTGGATGTTGAGACCAATACCACCAGCGTTCTTTGAAATCATAGC 10463 Query 131956 GCATTTGGTTAGAGTGTTATAGATACCTTCCACGCTGTCCGCGGCAATGTCGACTAAAAA 132015 || | | | ||| | ||||||||| || | || ||| | || || | | || Sbjct 10462 ACAAATCTTCAAAGTATCATAGATACCATCAATACTATCCTCCTTCATATCAATAAGGAA 10403 Query 132016 GCAAGAGGACAACTGTTGGTGAAATGTGCCGGCTGAAAACAATGTGGGGCTGGCGTGTGT 132075 ||| || || | ||| || || || || || || | ||| || |||||||| Sbjct 10402 GCATGATGAAAGCTGAGCCTGTGGAGTACCCGCAGAGAAGAGTGTTGGAGAAGCGTGTGT 10343 Query 132076 AAAAAGTTTTTTGGCCAT 132093 ||| ||| |||| ||| Sbjct 10342 AAAGTATTTGTTGGACAT 10325 >seq894 Length=6424 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||||||||| || || || |||||||| |||||||| || | | || | || || Sbjct 3457 ACCAAATGTAAAGTCGACTCCTTTTGAATGTTGTAGTCCGACAGGGTACGGCCATCCTCC 3516 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 | ||| ||||| ||| | |||||||| |||||||| || || | || || || || Sbjct 3517 AACTGCTTACCAGCGAAGATGAGACGTTGTTGATCAGGTGGAATGCCTTCCTTGTCTTGA 3576 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 |||||| | || | | | || | ||| || | | ||||| || | ||| || | || Sbjct 3577 ATCTTGCTCTTTACGTTGTCGATAGTATCAGATGACTCAACCTCCAAAGTGATTGTCTTT 3636 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || || ||||| || || || || |||||| Sbjct 3637 CCGGTAAGAGTCTTGACGAAAATCTGCATA 3666 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||||||||| || || || || || || ||||||||| | |||| |||| || Sbjct 3685 ACCAAATGTAAAGTCGATTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCGTCCTCA 3744 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 || || || || ||| | || | ||| |||||||| || || | |||||| ||||| Sbjct 3745 AGTTGCTTGCCAGCGAAGATCAAACGTTGTTGATCAGGGGGGATACCCTCCTTATCTTGA 3804 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 |||||| | || | | || | ||| || | | |||||| || ||||| |||| ||| Sbjct 3805 ATCTTGGTCTTAACATTGTCGATAGTATCCGAAGATTCAACCTCAAGAGTGATAGTCTTG 3864 Query 27219 CCCGTCAGAGTTTTCAC 27235 || || ||||| || || Sbjct 3865 CCGGTGAGAGTCTTGAC 3881 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424896361067640