Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20echinophila_20[genbank_20GCA_5F000812885.1_202014-12- 31] 7,345 sequences; 40,250,382 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq4887 241 2e-58 >seq4887 Length=16554 Score = 241 bits (266), Expect = 2e-58 Identities = 1131/1775 (64%), Gaps = 41/1775 (2%) Strand=Plus/Minus Query 110331 TGAACTGAATTGGTCGGGCTTTCGCCTTTGATCGGAGATAGTACATCCCGGTCTTGAGTC 110390 |||| ||||||||| || ||| | | |||||||||||||| || |||||||| | Sbjct 12002 TGAATTGAATTGGTGCGGAAGCAGCCATAGTACGGAGATAGTACATTCCAGTCTTGAGAC 11943 Query 110391 CTTGTTTCCATGCGTACATATGCATAGAAGAGAGCTTGGACATCGTTGGACTTTCCATGA 110450 || ||||||| | | |||||| |||| || |||| ||| || || | |||| Sbjct 11942 CTAATTTCCATCCAGCAAAATGCATGGAAGTGATCTTGCCCATTGTAGGGTCCTTCATGT 11883 Query 110451 AGAGGTTCATACTTTGACTTTGGTCAATGAAGCGCCCCCGTTGTGCCGCCATATCAATGA 110510 || |||||| |||| ||| || ||||| || || | ||| ||||| | || | Sbjct 11882 GGATGTTCATTGATTGAGATTGATCGATGAAAGCACCACGGTCTGCGGCCATCTGAACAA 11823 Query 110511 CATCCTTCATCTTA---ATTTCCCAAACTGTGCGATAGAGATTCTTGATATCATCTGGGA 110567 | ||| | | | ||||||||||| || |||||| ||||| ||| |||||| Sbjct 11822 TGT--TTCGT-TGAGAGATTTCCCAAACAGTCTTGTAGAGAGCCTTGAGTTCAGCTGGGA 11766 Query 110568 TATCTGAGATATTCTGGATGGAACCCCCCGCCTTCACCATGAGATCCTTCATATCCTTGG 110627 | | | || || || || || || || | | ||| | | |||||| | | | Sbjct 11765 TGTTGGGAATGTTTTGAATAGATCCACCGTCAGCGATGATGCGGTTCTTCATGTTGTCAG 11706 Query 110628 ACCAGAGACCAATCTTCTTGAGGTCATTGACGAGGTGCTTGTTGACAATGACAAACTCAC 110687 |||| || || || | | || |||| || |||||||| ||||| | Sbjct 11705 ACCAAAGTCCCATGTCGACCAAATCCTTGAGAAGCCATGGGTTGACAACTTGGAACTCTC 11646 Query 110688 CTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTAC 110747 | || || | | |||||||| | |||||||| || || ||||| || || Sbjct 11645 CGGCCAGCACACGACGGGAATAGATGTTGGAAGTGTATGGCTCGAAACATTCGTTGAAAC 11586 Query 110748 CCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGAC 110807 | | ||||| | || ||| |||||||| || || | | | |||||| |||| || Sbjct 11585 CGAGAATTTGAGATGTACTGGCAGTTGGCATAGGAGCAACAAGCAAACTGTTGCGAATAC 11526 Query 110808 CCTTCTCCTTGATGCGTTCCTTGAGAACATCCCAGTCGTAGTTGAGCT-TGGTTTCACCT 110866 | | | |||||| || |||||| |||||| || || || || | | | | Sbjct 11525 CATGTTGCTTGATAGATTGCTTGAGGCTATCCCAATCCCAGA-GATCTGTAGGAGTAACA 11467 Query 110867 TCCCACATGTCAAACTGAAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATA- 110925 ||||||| ||| | ||||| | || | ||| | |||||||| || |||| ||||| Sbjct 11466 CCCCACATATCATATTGAAGTTCACCCTTGGAAACTGGAGAACCTTCGTAGGTCTCATAT 11407 Query 110926 GGAACCTTGGGCTTCAGCCAATTC--ACAGCTCGCCTCCAGGGATGCGTGATACATGGTT 110983 || || ||| | |||| |||| || ||| | |||| || ||||| Sbjct 11406 GGGCCCAACTCCTT--GGCAATCTGAACAGACGAAGTCAAGGCAC-CGTGGTAGATGGTC 11350 Query 110984 TCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAA 111043 || || || | || | | ||||| ||| |||||| |||| | ||| Sbjct 11349 TCGAAAATCTGGATGTTAAGATGTTTGGCCTCAGGTGAATCGAATGGCAAACGGAGAGCC 11290 Query 111044 ATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGAC 111103 | || |||| || ||||| |||||||| | | ||||||||| ||| || | ||| | Sbjct 11289 AGGAAGGCATCAGCAAGACCCTGAACACCAACAGCAATAGGTCGGTGACGGAAGTTACTC 11230 Query 111104 TTTCGCGCAGTCTCA-ACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGT 111162 |||| || ||| || ||||| | || ||||||| | ||| | ||| || Sbjct 11229 TTTCTAGCT-TCTGGGACAGGATAGTAGTTGATGTCAATAATCTTGTTCAAGTTTCTGAC 11171 Query 111163 AACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCA---TT 111219 ||||| | || |||||||| |||| ||||| |||| | ||| | || Sbjct 11170 AACAACTTGAACGACCTCATGAAGCTTTTGGAAATCATAAGTTCC---CTCAGCCATGTT 11114 Query 111220 GACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGT 111279 |||| | |||| || || || || ||||| || || ||| ||||||| | | Sbjct 11113 GACAAAGGTTGGGAGAGCAATAGAAGCCAAGTTACAGCAAGCAACCTCATCCGGTGCAGA 11054 Query 111280 GTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTT 111339 ||| || | |||||||| || |||||||| || || || || | ||||||||||| Sbjct 11053 GTATTCGACGATTTCTGTGCACAAGTTGGAGCTACGGATTGTGCCGAGGTTCTTTTGGTT 10994 Query 111340 ACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGA 111399 |||||| |||||||| ||||| ||||| |||||| | || | || ||||| ||||| | Sbjct 10993 ACTCTTTTTGTTGCAAGCATCTTTGTAAAGCATGAAAGGGTTTCCAGTCTCAGTCTGGGC 10934 Query 111400 TTTGAGAATAGCCTTCCAAA-CATCGGCGGCTGGTACAATGGCGTT--GGCCCGTCCCTC 111456 | || || | | ||||| | | | | || | |||| || | || | ||| Sbjct 10933 CTCAAGGATGGAATACCAAAGCTTTTGAGCCTTG----ATGGTCTTACGACCTTTACCTT 10878 Query 111457 CGC-CTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTG 111515 | |||||| | ||||| || || || || ||||| | || | | |||| Sbjct 10877 GTCTCTCGTAACCTTCATAGAGAGCCTCGAATTCATCACCATAGACATCAGCCAAGCCTG 10818 Query 111516 GTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAA 111575 | | || || || | || | ||| | || | ||||| ||||||||||| | Sbjct 10817 GACATTCGTTAGGGCACATGAGTGTCCAGTCTCCGTTCTTTTCAACACGCTTCATGAAGA 10758 Query 111576 GGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGT 111635 | ||||||||||| |||| | |||||||| | | | | || || | || |||| Sbjct 10757 GATCTGGAATCCAGAGGGCATAGAAGAGATCGCGTGCTCTAACTTCCTCTTTGCCGTGGT 10698 Query 111636 TGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGAC----- 111690 | ||| | || | |||||| | || |||||| |||||||| ||||| || || Sbjct 10697 TCTTTCGGAGGTCCAAGAACTCAAAGACATCCGCATGCCATGGTTCAAGGTAAACGGCAA 10638 Query 111691 -TGCGATAGATCCCTTTCGACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATA 111749 ||| || | ||| | ||| |||| | ||||| | || ||| ||| || | Sbjct 10637 ATGCACCAGGGCGCTTGTTA---CCACCTTGGTCGACATATCTAGCGGTGTTGTTGAAAA 10581 Query 111750 CGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTAT 111809 | |||||||| |||| ||||| | || | ||| ||||| || ||| | | Sbjct 10580 CTCGAAGCATAGGAACGATACCGTTAGAGTTACCGTTTGTGCCTGCAATGTAGGCACCAG 10521 Query 111810 TGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCAC 111869 | || | | ||||||| | |||||||| ||||| |||||| || |||| Sbjct 10520 TAGCACGGATTCTGTGGATGTTGAGACCAATACCACCAGCGTTCTTTGAAATCATAGCAC 10461 Query 111870 ACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGC 111929 | | | | ||| |||||||||| | || |||||||| | | |||||||||| Sbjct 10460 AAATCTTCAAAGTATCATAGATACCATCAATACTATCCTCCTTCATATCAATAAGGAAGC 10401 Query 111930 AACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGA 111989 | || | ||| | ||| ||||| ||| |||||| ||||| | ||||| | | Sbjct 10400 ATGATGAAAGCTGAGCCTGTGGAGTACCCGCAGAGAAGAGTGTTGGAGAAGCGTGTGT-A 10342 Query 111990 ACATACCT-TGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGG 112048 | || | | ||||||| || |||||| || | | || ||||| || || ||||| Sbjct 10341 AAGTATTTGTTGGACATCAAGTTGTATGTTTCGATGGCACTTTCAATATCATCACCGTGA 10282 Query 112049 ATGCCGATTGCGACCCGCATGAACATGTACTGTGG 112083 || || | || || ||||||| ||| | ||||| Sbjct 10281 ATACCAACGGCAACACGCATGATCATTTGTTGTGG 10247 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627974338812000