Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rutstroemia_20echinophila_20[genbank_20GCA_5F000812885.1_202014-12-
31] 7,345 sequences; 40,250,382 total letters
Query= NC_028091.1
Length=196300
Score E
Sequences producing significant alignments: (Bits) Value
seq4887 241 2e-58
>seq4887
Length=16554
Score = 241 bits (266), Expect = 2e-58
Identities = 1131/1775 (64%), Gaps = 41/1775 (2%)
Strand=Plus/Minus
Query 110331 TGAACTGAATTGGTCGGGCTTTCGCCTTTGATCGGAGATAGTACATCCCGGTCTTGAGTC 110390
|||| ||||||||| || ||| | | |||||||||||||| || |||||||| |
Sbjct 12002 TGAATTGAATTGGTGCGGAAGCAGCCATAGTACGGAGATAGTACATTCCAGTCTTGAGAC 11943
Query 110391 CTTGTTTCCATGCGTACATATGCATAGAAGAGAGCTTGGACATCGTTGGACTTTCCATGA 110450
|| ||||||| | | |||||| |||| || |||| ||| || || | ||||
Sbjct 11942 CTAATTTCCATCCAGCAAAATGCATGGAAGTGATCTTGCCCATTGTAGGGTCCTTCATGT 11883
Query 110451 AGAGGTTCATACTTTGACTTTGGTCAATGAAGCGCCCCCGTTGTGCCGCCATATCAATGA 110510
|| |||||| |||| ||| || ||||| || || | ||| ||||| | || |
Sbjct 11882 GGATGTTCATTGATTGAGATTGATCGATGAAAGCACCACGGTCTGCGGCCATCTGAACAA 11823
Query 110511 CATCCTTCATCTTA---ATTTCCCAAACTGTGCGATAGAGATTCTTGATATCATCTGGGA 110567
| ||| | | | ||||||||||| || |||||| ||||| ||| ||||||
Sbjct 11822 TGT--TTCGT-TGAGAGATTTCCCAAACAGTCTTGTAGAGAGCCTTGAGTTCAGCTGGGA 11766
Query 110568 TATCTGAGATATTCTGGATGGAACCCCCCGCCTTCACCATGAGATCCTTCATATCCTTGG 110627
| | | || || || || || || || | | ||| | | |||||| | | |
Sbjct 11765 TGTTGGGAATGTTTTGAATAGATCCACCGTCAGCGATGATGCGGTTCTTCATGTTGTCAG 11706
Query 110628 ACCAGAGACCAATCTTCTTGAGGTCATTGACGAGGTGCTTGTTGACAATGACAAACTCAC 110687
|||| || || || | | || |||| || |||||||| ||||| |
Sbjct 11705 ACCAAAGTCCCATGTCGACCAAATCCTTGAGAAGCCATGGGTTGACAACTTGGAACTCTC 11646
Query 110688 CTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTAC 110747
| || || | | |||||||| | |||||||| || || ||||| || ||
Sbjct 11645 CGGCCAGCACACGACGGGAATAGATGTTGGAAGTGTATGGCTCGAAACATTCGTTGAAAC 11586
Query 110748 CCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGAC 110807
| | ||||| | || ||| |||||||| || || | | | |||||| |||| ||
Sbjct 11585 CGAGAATTTGAGATGTACTGGCAGTTGGCATAGGAGCAACAAGCAAACTGTTGCGAATAC 11526
Query 110808 CCTTCTCCTTGATGCGTTCCTTGAGAACATCCCAGTCGTAGTTGAGCT-TGGTTTCACCT 110866
| | | |||||| || |||||| |||||| || || || || | | | |
Sbjct 11525 CATGTTGCTTGATAGATTGCTTGAGGCTATCCCAATCCCAGA-GATCTGTAGGAGTAACA 11467
Query 110867 TCCCACATGTCAAACTGAAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATA- 110925
||||||| ||| | ||||| | || | ||| | |||||||| || |||| |||||
Sbjct 11466 CCCCACATATCATATTGAAGTTCACCCTTGGAAACTGGAGAACCTTCGTAGGTCTCATAT 11407
Query 110926 GGAACCTTGGGCTTCAGCCAATTC--ACAGCTCGCCTCCAGGGATGCGTGATACATGGTT 110983
|| || ||| | |||| |||| || ||| | |||| || |||||
Sbjct 11406 GGGCCCAACTCCTT--GGCAATCTGAACAGACGAAGTCAAGGCAC-CGTGGTAGATGGTC 11350
Query 110984 TCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAA 111043
|| || || | || | | ||||| ||| |||||| |||| | |||
Sbjct 11349 TCGAAAATCTGGATGTTAAGATGTTTGGCCTCAGGTGAATCGAATGGCAAACGGAGAGCC 11290
Query 111044 ATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGAC 111103
| || |||| || ||||| |||||||| | | ||||||||| ||| || | ||| |
Sbjct 11289 AGGAAGGCATCAGCAAGACCCTGAACACCAACAGCAATAGGTCGGTGACGGAAGTTACTC 11230
Query 111104 TTTCGCGCAGTCTCA-ACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGT 111162
|||| || ||| || ||||| | || ||||||| | ||| | ||| ||
Sbjct 11229 TTTCTAGCT-TCTGGGACAGGATAGTAGTTGATGTCAATAATCTTGTTCAAGTTTCTGAC 11171
Query 111163 AACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCA---TT 111219
||||| | || |||||||| |||| ||||| |||| | ||| | ||
Sbjct 11170 AACAACTTGAACGACCTCATGAAGCTTTTGGAAATCATAAGTTCC---CTCAGCCATGTT 11114
Query 111220 GACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGT 111279
|||| | |||| || || || || ||||| || || ||| ||||||| | |
Sbjct 11113 GACAAAGGTTGGGAGAGCAATAGAAGCCAAGTTACAGCAAGCAACCTCATCCGGTGCAGA 11054
Query 111280 GTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTT 111339
||| || | |||||||| || |||||||| || || || || | |||||||||||
Sbjct 11053 GTATTCGACGATTTCTGTGCACAAGTTGGAGCTACGGATTGTGCCGAGGTTCTTTTGGTT 10994
Query 111340 ACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGA 111399
|||||| |||||||| ||||| ||||| |||||| | || | || ||||| ||||| |
Sbjct 10993 ACTCTTTTTGTTGCAAGCATCTTTGTAAAGCATGAAAGGGTTTCCAGTCTCAGTCTGGGC 10934
Query 111400 TTTGAGAATAGCCTTCCAAA-CATCGGCGGCTGGTACAATGGCGTT--GGCCCGTCCCTC 111456
| || || | | ||||| | | | | || | |||| || | || | |||
Sbjct 10933 CTCAAGGATGGAATACCAAAGCTTTTGAGCCTTG----ATGGTCTTACGACCTTTACCTT 10878
Query 111457 CGC-CTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTG 111515
| |||||| | ||||| || || || || ||||| | || | | ||||
Sbjct 10877 GTCTCTCGTAACCTTCATAGAGAGCCTCGAATTCATCACCATAGACATCAGCCAAGCCTG 10818
Query 111516 GTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAA 111575
| | || || || | || | ||| | || | ||||| ||||||||||| |
Sbjct 10817 GACATTCGTTAGGGCACATGAGTGTCCAGTCTCCGTTCTTTTCAACACGCTTCATGAAGA 10758
Query 111576 GGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGT 111635
| ||||||||||| |||| | |||||||| | | | | || || | || ||||
Sbjct 10757 GATCTGGAATCCAGAGGGCATAGAAGAGATCGCGTGCTCTAACTTCCTCTTTGCCGTGGT 10698
Query 111636 TGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGAC----- 111690
| ||| | || | |||||| | || |||||| |||||||| ||||| || ||
Sbjct 10697 TCTTTCGGAGGTCCAAGAACTCAAAGACATCCGCATGCCATGGTTCAAGGTAAACGGCAA 10638
Query 111691 -TGCGATAGATCCCTTTCGACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATA 111749
||| || | ||| | ||| |||| | ||||| | || ||| ||| || |
Sbjct 10637 ATGCACCAGGGCGCTTGTTA---CCACCTTGGTCGACATATCTAGCGGTGTTGTTGAAAA 10581
Query 111750 CGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTAT 111809
| |||||||| |||| ||||| | || | ||| ||||| || ||| | |
Sbjct 10580 CTCGAAGCATAGGAACGATACCGTTAGAGTTACCGTTTGTGCCTGCAATGTAGGCACCAG 10521
Query 111810 TGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCAC 111869
| || | | ||||||| | |||||||| ||||| |||||| || ||||
Sbjct 10520 TAGCACGGATTCTGTGGATGTTGAGACCAATACCACCAGCGTTCTTTGAAATCATAGCAC 10461
Query 111870 ACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGC 111929
| | | | ||| |||||||||| | || |||||||| | | ||||||||||
Sbjct 10460 AAATCTTCAAAGTATCATAGATACCATCAATACTATCCTCCTTCATATCAATAAGGAAGC 10401
Query 111930 AACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGA 111989
| || | ||| | ||| ||||| ||| |||||| ||||| | ||||| | |
Sbjct 10400 ATGATGAAAGCTGAGCCTGTGGAGTACCCGCAGAGAAGAGTGTTGGAGAAGCGTGTGT-A 10342
Query 111990 ACATACCT-TGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGG 112048
| || | | ||||||| || |||||| || | | || ||||| || || |||||
Sbjct 10341 AAGTATTTGTTGGACATCAAGTTGTATGTTTCGATGGCACTTTCAATATCATCACCGTGA 10282
Query 112049 ATGCCGATTGCGACCCGCATGAACATGTACTGTGG 112083
|| || | || || ||||||| ||| | |||||
Sbjct 10281 ATACCAACGGCAACACGCATGATCATTTGTTGTGG 10247
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 627974338812000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |