Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20echinophila_20[genbank_20GCA_5F000812885.1_202014-12- 31] 7,345 sequences; 40,250,382 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq4887 208 9e-49 seq4745 107 2e-18 >seq4887 Length=16554 Score = 208 bits (230), Expect = 9e-49 Identities = 1111/1750 (63%), Gaps = 55/1750 (3%) Strand=Plus/Minus Query 117837 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGAC 117896 ||||| |||||||| || |||||||| || ||||| || | |||||| || | Sbjct 11970 CGGAGATAGTACATTCCAGTCTTGAGACCTAATTTCCATCCAGCAAAATGCATGGAAGTG 11911 Query 117897 AACTTGGAGAGGGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAG 117956 | |||| | || || | |||| || |||||| ||| |||||||||||||| Sbjct 11910 ATCTTGCCCATTGTAGGGTCCTTCATGTGGATGTTCATTGATTGAGATTGATCGATGAAA 11851 Query 117957 CGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTGA--TTTCCCACACAGTCC 118014 || || || || ||||| | || || || ||| | || ||||||| |||||| Sbjct 11850 GCACCACGGTCTGCGGCCATCTGAA-CA-ATGTTTCGTTGAGAGATTTCCCAAACAGTCT 11793 Query 118015 TGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGATCCACCCGCCT 118074 ||||||| ||| | ||| ||||||| | || ||||| || |||||||| | Sbjct 11792 TGTAGAGAGCCTTGAGTTCAGCTGGGATGTTGGGAATGTTTTGAATAGATCCACCGTCAG 11733 Query 118075 TGACCATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCACGA 118134 || ||| | | |||||| | | ||||| || || || | | ||||| | | Sbjct 11732 CGATGATGCGGTTCTTCATGTTGTCAGACCAAAGTCCCATGTCGACCAAATCCTTGAGAA 11673 Query 118135 G--ATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGT 118192 | ||| | ||||||| ||||| || || || || | |||||| |||| Sbjct 11672 GCCATGGGT--TGACAACTTGGAACTCTCCGGCCAGCACACGACGGGAATAGATGTTGGA 11615 Query 118193 CGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCAT 118252 ||||||||||| || || || ||| ||| | ||||| | ||| ||| || ||||| Sbjct 11614 AGTGTATGGCTCGAAACATTCGTTGAAACCGAGAATTTGAGATGTACTGGCAGTTGGCAT 11555 Query 118253 GGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGAGCGTC 118312 || || | || | ||||| || | ||| | || | | || || |||||| || Sbjct 11554 AGGAGCAACAAGCAAACTGTTGCGAATACCATGTTGCTTGATAGATTGCTTGAGGCTATC 11495 Query 118313 CCAGTCGTAGTTGAGCTTT----GTCTCCCCCTGCCACATATCAAACTGGAGGATACCTT 118368 ||| || || || || | || | ||| ||||||||| | || || ||| | Sbjct 11494 CCAATCCCAGA-GATCTGTAGGAGTAACACCC---CACATATCATATTGAAGTTCACCCT 11439 Query 118369 GGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCC--GCCAATTCGGA 118426 ||| |||| || || || | ||||||||||||||| | |||| | |||| | || Sbjct 11438 TGGAAACTGGAGAACCTTCGTAGGTCTCATATGGGCCC---AACTCCTTGGCAAT-CTGA 11383 Query 118427 GCTCGCCTCG--AGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCATTGCCTTG 118484 | | | | ||| |||| || || || || ||||| | || | ||| Sbjct 11382 ACAGACGAAGTCAAGGCACCGTGGTAGATGGTCTCGAAAATCTGGATGTTAAGATGTTTG 11323 Query 118485 GCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTTGGACA 118544 ||||| ||||| || | | ||| | || |||| || ||||| || ||| Sbjct 11322 GCCTCAGGTGAATCGAATGGCAAACGGAGAGCCAGGAAGGCATCAGCAAGACCCTGAACA 11263 Query 118545 CCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTCC-ACGGGATAAAA 118603 || | |||| || || || | | ||| ||| | ||| ||| || ||||| | Sbjct 11262 CCAACAGCAATAGGTCGGTGACGGAAGTTACTCTTTCTAGCT-TCTGGGACAGGATAGTA 11204 Query 118604 ATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTT 118663 || | || |||| | | || | ||| || ||||| | || ||||||||||| Sbjct 11203 GTTGATGTCAATAATCTTGTTCAAGTTTCTGACAACAACTTGAACGACCTCATGAAGCTT 11144 Query 118664 TTCGTAATCAAAACTGCGAGTCTCTTCA---TTGACATACTTAGGAAGGGCGATTGACGC 118720 || | ||||| || | | ||| | |||||| | | || || || || || || Sbjct 11143 TTGGAAATCATAAGTTCC---CTCAGCCATGTTGACAAAGGTTGGGAGAGCAATAGAAGC 11087 Query 118721 CAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAAGTT 118780 || ||||| || ||||||| ||| ||| || | ||||| ||||||||||| Sbjct 11086 CAAGTTACAGCAAGCAACCTCATCCGGTGCAGAGTATTCGACGATTTCTGTGCACAAGTT 11027 Query 118781 TGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTA 118840 || || || ||||| | ||||||||| || |||| |||| || ||||| ||||| Sbjct 11026 GGAGCTACGGATTGTGCCGAGGTTCTTTTGGTTACTCTTTTTGTTGCAAGCATCTTTGTA 10967 Query 118841 AAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGACATCGGC 118900 ||||||| | || | || ||||| || |||| || || || | | ||| | | Sbjct 10966 AAGCATGAAAGGGTTTCCAGTCTCAGTCTGGGCCTCAAGGATGGAATACCAAAGCTTTTG 10907 Query 118901 AGCTGGCACAGTGGCGTTGG--CTCGCCCCTCTTCCTCGTACTTTGTGTAGAGGGCTTCA 118958 ||| | || | | | || || | | |||||| | ||||| || || Sbjct 10906 AGCCTTGATGGT--CTTACGACCTTTACCTTGTCTCTCGTAACCTTCATAGAGAGCCTCG 10849 Query 118959 AACTCTTCACCCACGGCCTCTGAGAGCCCTGG---TGCCTTATCTGGGCAGAAGAGAGAC 119015 || || ||||| | | || | | ||||| | | ||| ||||| | ||| | | Sbjct 10848 AATTCATCACCATAGACATCAGCCAAGCCTGGACATTCGTTA---GGGCACATGAGTGTC 10792 Query 119016 CATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAG 119075 || | || || ||||| |||||||||||||| ||||| |||||||| || ||||| Sbjct 10791 CAGTCTCCGTTCTTTTCAACACGCTTCATGAAGAGATCTGGAATCCAGAGGGCATAGAAG 10732 Query 119076 AGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATG 119135 ||||| || | | |||| || | || || || || | ||||| || || | | Sbjct 10731 AGATCGCGTGCTCTAACTTCCTCTTTGCCGTGGTTCTTTCGGAGGTCCAAGAACTCAAAG 10672 Query 119136 ATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACGACG------ACCA 119189 | |||||| ||||| ||||| ||||| || || | || || | | || |||| Sbjct 10671 ACATCCGCATGCCATGGTTCAAGGTAAACGGCAAATGCACC---AGGGCGCTTGTTACCA 10615 Query 119190 GCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATACCATCG 119249 | |||| ||||| || || ||| ||| || || |||||||| |||| |||||| | Sbjct 10614 CCTTGGTCGACATATCTAGCGGTGTTGTTGAAAACTCGAAGCATAGGAACGATACCGTTA 10555 Query 119250 GATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGACATCGTGGATGTGCATA 119309 || | || ||||| || ||| | | | || | || |||||||| | | Sbjct 10554 GAGTTACCGTTTGTGCCTGCAATGTAGGCACCAGTAGCACGGATTCTGTGGATGTTGAGA 10495 Query 119310 CCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCA 119369 |||||||| || || |||||| || || || | | | | | | ||||| ||| Sbjct 10494 CCAATACCACCAGCGTTCTTTGAAATCATAGCACAAATCTTCAAAGTATCATAGATACCA 10435 Query 119370 TCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTG-GGTGT 119428 || || || |||| | | || |||||||| || | ||| ||||| || || Sbjct 10434 TCAATACTATCCTCCTTCATATCAATAAGGAAGCATGATGAAAGCTGA-GCCTGTGGAGT 10376 Query 119429 ACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCT-TGGGACATCTTGTCGT 119487 ||| || |||||| ||||| | ||||| | || || | | ||||||| || || Sbjct 10375 ACCCGCAGAGAAGAGTGTTGGAGAAGCGTGTGT-AAAGTATTTGTTGGACATCAAGTTGT 10317 Query 119488 AGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATAAACA 119547 | || || | | | ||| || || ||||||||||| | | || ||||| | || Sbjct 10316 ATGTTTCGATGGCACTTTCAATATCATCACCGTGAATACCAACGGCAACACGCATGATCA 10257 Query 119548 TGTATTGGGG 119557 | | ||| || Sbjct 10256 TTTGTTGTGG 10247 >seq4745 Length=15183 Score = 107 bits (118), Expect = 2e-18 Identities = 298/451 (66%), Gaps = 6/451 (1%) Strand=Plus/Plus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 ||||| ||||| ||||||||||||||||| ||||| || | | || || ||||| Sbjct 8697 TAGTCGCCAACTCGCTTCTCGAAGAAGTTGGTCTTGCCTGCGAGAGAAATGTTTTCCATG 8756 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAAT-TGCTGGCACT-CCAATCTGTTTGAGGAGAC 129845 || || ||||| || ||| ||| | || || | |||| || |||| Sbjct 8757 AAGTCGAATGGATTGGCTGATCGGTAAACCTTCT--CATTACCAAGAGCAACAAGAAGAC 8814 Query 129846 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTAC 129905 | || | |||| |||||||||| | |||| || |||||||| || | ||| || Sbjct 8815 GGTCTGCGACGAACTCAATGTATTGCTTCATCAAATCCGAGTTCATGCCAAGGAGAGCAC 8874 Query 129906 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGT 129965 |||| || || ||| | ||| | | |||||| | ||||| || | | | | Sbjct 8875 ATGGAAGAGCTTCCGTCAAGAATTCTTGCTCAATCTGGACAGCCTCTGTAATAACATCCT 8934 Query 129966 GAATGGTCTCCGTGCCAGGTCTATTGCGCAAAGT-CTTGAAGAGTTCCACGGCAAACTCC 130024 ||| || | ||| || | || || |||| | |||||| ||| || || Sbjct 8935 GAACGGCTTGTTTGCTTGGGCGAT-GCTTCAAGTGCGAGAAGAGCAGGCAGGCGAAGTCG 8993 Query 130025 TGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGA 130084 || ||||||||||||||||||||||| || || || ||| ||||| | ||| | Sbjct 8994 GTATGAAGACCCTCGTCACGGGAGATGAGCTCGTTGGAAAAGGTGAGACCAGCCATCAAG 9053 Query 130085 CCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACA 130144 || |||||||| | ||||||||| | || || ||| ||||||||| || || || Sbjct 9054 CCACGCTTCTTGAGCCAGAAAATAGAGGCGAAGGAACCACTGAAGAAGATACCTTCAACG 9113 Query 130145 CACGCGAACGCAAAGAGACGCTCAGCAAAGG 130175 ||||| || | |||||| | |||||||| Sbjct 9114 GCAGCGAATGCGACGAGACGTTGAGCAAAGG 9144 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618378419918200