Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rutstroemia_20echinophila_20[genbank_20GCA_5F000812885.1_202014-12-
31] 7,345 sequences; 40,250,382 total letters
Query= NC_028092.1
Length=193301
Score E
Sequences producing significant alignments: (Bits) Value
seq4887 208 9e-49
seq4745 107 2e-18
>seq4887
Length=16554
Score = 208 bits (230), Expect = 9e-49
Identities = 1111/1750 (63%), Gaps = 55/1750 (3%)
Strand=Plus/Minus
Query 117837 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGAC 117896
||||| |||||||| || |||||||| || ||||| || | |||||| || |
Sbjct 11970 CGGAGATAGTACATTCCAGTCTTGAGACCTAATTTCCATCCAGCAAAATGCATGGAAGTG 11911
Query 117897 AACTTGGAGAGGGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAG 117956
| |||| | || || | |||| || |||||| ||| ||||||||||||||
Sbjct 11910 ATCTTGCCCATTGTAGGGTCCTTCATGTGGATGTTCATTGATTGAGATTGATCGATGAAA 11851
Query 117957 CGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTGA--TTTCCCACACAGTCC 118014
|| || || || ||||| | || || || ||| | || ||||||| ||||||
Sbjct 11850 GCACCACGGTCTGCGGCCATCTGAA-CA-ATGTTTCGTTGAGAGATTTCCCAAACAGTCT 11793
Query 118015 TGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGATCCACCCGCCT 118074
||||||| ||| | ||| ||||||| | || ||||| || |||||||| |
Sbjct 11792 TGTAGAGAGCCTTGAGTTCAGCTGGGATGTTGGGAATGTTTTGAATAGATCCACCGTCAG 11733
Query 118075 TGACCATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCACGA 118134
|| ||| | | |||||| | | ||||| || || || | | ||||| | |
Sbjct 11732 CGATGATGCGGTTCTTCATGTTGTCAGACCAAAGTCCCATGTCGACCAAATCCTTGAGAA 11673
Query 118135 G--ATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGT 118192
| ||| | ||||||| ||||| || || || || | |||||| ||||
Sbjct 11672 GCCATGGGT--TGACAACTTGGAACTCTCCGGCCAGCACACGACGGGAATAGATGTTGGA 11615
Query 118193 CGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCAT 118252
||||||||||| || || || ||| ||| | ||||| | ||| ||| || |||||
Sbjct 11614 AGTGTATGGCTCGAAACATTCGTTGAAACCGAGAATTTGAGATGTACTGGCAGTTGGCAT 11555
Query 118253 GGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGAGCGTC 118312
|| || | || | ||||| || | ||| | || | | || || |||||| ||
Sbjct 11554 AGGAGCAACAAGCAAACTGTTGCGAATACCATGTTGCTTGATAGATTGCTTGAGGCTATC 11495
Query 118313 CCAGTCGTAGTTGAGCTTT----GTCTCCCCCTGCCACATATCAAACTGGAGGATACCTT 118368
||| || || || || | || | ||| ||||||||| | || || ||| |
Sbjct 11494 CCAATCCCAGA-GATCTGTAGGAGTAACACCC---CACATATCATATTGAAGTTCACCCT 11439
Query 118369 GGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCC--GCCAATTCGGA 118426
||| |||| || || || | ||||||||||||||| | |||| | |||| | ||
Sbjct 11438 TGGAAACTGGAGAACCTTCGTAGGTCTCATATGGGCCC---AACTCCTTGGCAAT-CTGA 11383
Query 118427 GCTCGCCTCG--AGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCATTGCCTTG 118484
| | | | ||| |||| || || || || ||||| | || | |||
Sbjct 11382 ACAGACGAAGTCAAGGCACCGTGGTAGATGGTCTCGAAAATCTGGATGTTAAGATGTTTG 11323
Query 118485 GCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTTGGACA 118544
||||| ||||| || | | ||| | || |||| || ||||| || |||
Sbjct 11322 GCCTCAGGTGAATCGAATGGCAAACGGAGAGCCAGGAAGGCATCAGCAAGACCCTGAACA 11263
Query 118545 CCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTCC-ACGGGATAAAA 118603
|| | |||| || || || | | ||| ||| | ||| ||| || ||||| |
Sbjct 11262 CCAACAGCAATAGGTCGGTGACGGAAGTTACTCTTTCTAGCT-TCTGGGACAGGATAGTA 11204
Query 118604 ATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTT 118663
|| | || |||| | | || | ||| || ||||| | || |||||||||||
Sbjct 11203 GTTGATGTCAATAATCTTGTTCAAGTTTCTGACAACAACTTGAACGACCTCATGAAGCTT 11144
Query 118664 TTCGTAATCAAAACTGCGAGTCTCTTCA---TTGACATACTTAGGAAGGGCGATTGACGC 118720
|| | ||||| || | | ||| | |||||| | | || || || || || ||
Sbjct 11143 TTGGAAATCATAAGTTCC---CTCAGCCATGTTGACAAAGGTTGGGAGAGCAATAGAAGC 11087
Query 118721 CAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAAGTT 118780
|| ||||| || ||||||| ||| ||| || | ||||| |||||||||||
Sbjct 11086 CAAGTTACAGCAAGCAACCTCATCCGGTGCAGAGTATTCGACGATTTCTGTGCACAAGTT 11027
Query 118781 TGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTA 118840
|| || || ||||| | ||||||||| || |||| |||| || ||||| |||||
Sbjct 11026 GGAGCTACGGATTGTGCCGAGGTTCTTTTGGTTACTCTTTTTGTTGCAAGCATCTTTGTA 10967
Query 118841 AAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGACATCGGC 118900
||||||| | || | || ||||| || |||| || || || | | ||| | |
Sbjct 10966 AAGCATGAAAGGGTTTCCAGTCTCAGTCTGGGCCTCAAGGATGGAATACCAAAGCTTTTG 10907
Query 118901 AGCTGGCACAGTGGCGTTGG--CTCGCCCCTCTTCCTCGTACTTTGTGTAGAGGGCTTCA 118958
||| | || | | | || || | | |||||| | ||||| || ||
Sbjct 10906 AGCCTTGATGGT--CTTACGACCTTTACCTTGTCTCTCGTAACCTTCATAGAGAGCCTCG 10849
Query 118959 AACTCTTCACCCACGGCCTCTGAGAGCCCTGG---TGCCTTATCTGGGCAGAAGAGAGAC 119015
|| || ||||| | | || | | ||||| | | ||| ||||| | ||| | |
Sbjct 10848 AATTCATCACCATAGACATCAGCCAAGCCTGGACATTCGTTA---GGGCACATGAGTGTC 10792
Query 119016 CATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAG 119075
|| | || || ||||| |||||||||||||| ||||| |||||||| || |||||
Sbjct 10791 CAGTCTCCGTTCTTTTCAACACGCTTCATGAAGAGATCTGGAATCCAGAGGGCATAGAAG 10732
Query 119076 AGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATG 119135
||||| || | | |||| || | || || || || | ||||| || || | |
Sbjct 10731 AGATCGCGTGCTCTAACTTCCTCTTTGCCGTGGTTCTTTCGGAGGTCCAAGAACTCAAAG 10672
Query 119136 ATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACGACG------ACCA 119189
| |||||| ||||| ||||| ||||| || || | || || | | || ||||
Sbjct 10671 ACATCCGCATGCCATGGTTCAAGGTAAACGGCAAATGCACC---AGGGCGCTTGTTACCA 10615
Query 119190 GCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATACCATCG 119249
| |||| ||||| || || ||| ||| || || |||||||| |||| |||||| |
Sbjct 10614 CCTTGGTCGACATATCTAGCGGTGTTGTTGAAAACTCGAAGCATAGGAACGATACCGTTA 10555
Query 119250 GATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGACATCGTGGATGTGCATA 119309
|| | || ||||| || ||| | | | || | || |||||||| | |
Sbjct 10554 GAGTTACCGTTTGTGCCTGCAATGTAGGCACCAGTAGCACGGATTCTGTGGATGTTGAGA 10495
Query 119310 CCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCA 119369
|||||||| || || |||||| || || || | | | | | | ||||| |||
Sbjct 10494 CCAATACCACCAGCGTTCTTTGAAATCATAGCACAAATCTTCAAAGTATCATAGATACCA 10435
Query 119370 TCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTG-GGTGT 119428
|| || || |||| | | || |||||||| || | ||| ||||| || ||
Sbjct 10434 TCAATACTATCCTCCTTCATATCAATAAGGAAGCATGATGAAAGCTGA-GCCTGTGGAGT 10376
Query 119429 ACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCT-TGGGACATCTTGTCGT 119487
||| || |||||| ||||| | ||||| | || || | | ||||||| || ||
Sbjct 10375 ACCCGCAGAGAAGAGTGTTGGAGAAGCGTGTGT-AAAGTATTTGTTGGACATCAAGTTGT 10317
Query 119488 AGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATAAACA 119547
| || || | | | ||| || || ||||||||||| | | || ||||| | ||
Sbjct 10316 ATGTTTCGATGGCACTTTCAATATCATCACCGTGAATACCAACGGCAACACGCATGATCA 10257
Query 119548 TGTATTGGGG 119557
| | ||| ||
Sbjct 10256 TTTGTTGTGG 10247
>seq4745
Length=15183
Score = 107 bits (118), Expect = 2e-18
Identities = 298/451 (66%), Gaps = 6/451 (1%)
Strand=Plus/Plus
Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787
||||| ||||| ||||||||||||||||| ||||| || | | || || |||||
Sbjct 8697 TAGTCGCCAACTCGCTTCTCGAAGAAGTTGGTCTTGCCTGCGAGAGAAATGTTTTCCATG 8756
Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAAT-TGCTGGCACT-CCAATCTGTTTGAGGAGAC 129845
|| || ||||| || ||| ||| | || || | |||| || ||||
Sbjct 8757 AAGTCGAATGGATTGGCTGATCGGTAAACCTTCT--CATTACCAAGAGCAACAAGAAGAC 8814
Query 129846 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTAC 129905
| || | |||| |||||||||| | |||| || |||||||| || | ||| ||
Sbjct 8815 GGTCTGCGACGAACTCAATGTATTGCTTCATCAAATCCGAGTTCATGCCAAGGAGAGCAC 8874
Query 129906 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGT 129965
|||| || || ||| | ||| | | |||||| | ||||| || | | | |
Sbjct 8875 ATGGAAGAGCTTCCGTCAAGAATTCTTGCTCAATCTGGACAGCCTCTGTAATAACATCCT 8934
Query 129966 GAATGGTCTCCGTGCCAGGTCTATTGCGCAAAGT-CTTGAAGAGTTCCACGGCAAACTCC 130024
||| || | ||| || | || || |||| | |||||| ||| || ||
Sbjct 8935 GAACGGCTTGTTTGCTTGGGCGAT-GCTTCAAGTGCGAGAAGAGCAGGCAGGCGAAGTCG 8993
Query 130025 TGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGA 130084
|| ||||||||||||||||||||||| || || || ||| ||||| | ||| |
Sbjct 8994 GTATGAAGACCCTCGTCACGGGAGATGAGCTCGTTGGAAAAGGTGAGACCAGCCATCAAG 9053
Query 130085 CCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACA 130144
|| |||||||| | ||||||||| | || || ||| ||||||||| || || ||
Sbjct 9054 CCACGCTTCTTGAGCCAGAAAATAGAGGCGAAGGAACCACTGAAGAAGATACCTTCAACG 9113
Query 130145 CACGCGAACGCAAAGAGACGCTCAGCAAAGG 130175
||||| || | |||||| | ||||||||
Sbjct 9114 GCAGCGAATGCGACGAGACGTTGAGCAAAGG 9144
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 618378419918200
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