Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rutstroemia_20echinophila_20[genbank_20GCA_5F000812885.1_202014-12-
31] 7,345 sequences; 40,250,382 total letters
Query= NC_028093.1
Length=182309
Score E
Sequences producing significant alignments: (Bits) Value
seq4887 282 5e-71
seq4745 163 3e-35
>seq4887
Length=16554
Score = 282 bits (312), Expect = 5e-71
Identities = 1158/1795 (65%), Gaps = 53/1795 (3%)
Strand=Plus/Plus
Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281
||||| | ||| ||||||| || ||| | |||||||| || || || ||||| || |
Sbjct 10247 CCACAACAAATGATCATGCGTGTTGCCGTTGGTATTCACGGTGATGATATTGAAAGTGCC 10306
Query 104282 TTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAACCCTCTT 104340
| || |||||| || ||||||| | | || || | ||||| | ||||| |||||
Sbjct 10307 ATCGAAACATACAACTTGATGTCCAACAAATACTTT-ACACACGCTTCTCCAACACTCTT 10365
Query 104341 CAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 104400
| ||| ||||| ||| | || | || ||||||||||| | | ||||||||
Sbjct 10366 CTCTGCGGGTACTCCACAGGCTCAGCTTTCATCATGCTTCCTTATTGATATGAAGGAGGA 10425
Query 104401 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 104460
|| | |||||||||| ||| | | | ||||| || |||||| |||||
Sbjct 10426 TAGTATTGATGGTATCTATGATACTTTGAAGATTTGTGCTATGATTTCAAAGAACGCTGG 10485
Query 104461 GGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAA 104520
|||||||| | ||||||| | | || | | | ||| || |||||
Sbjct 10486 TGGTATTGGTCTCAACATCCACAGAATCCGTGCTACTGGTGCCTACATTGCAGGCACAAA 10545
Query 104521 TGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGT 104580
||| | || | ||||| |||| |||||||| || || ||| ||| || | |||||
Sbjct 10546 CGGTAACTCTAACGGTATCGTTCCTATGCTTCGAGTTTTCAACAACACCGCTAGATATGT 10605
Query 104581 AAATCAAGCTGGGCGTCGAAAGGGATCTATCGCA------GTCTATCTTGAGCCATGGCA 104634
| |||| ||| | ||| | || ||| || || ||||| ||||||||
Sbjct 10606 CGACCAAGGTGG---TAACAAGCGCCCTGGTGCATTTGCCGTTTACCTTGAACCATGGCA 10662
Query 104635 CGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTG 104694
|||||| || | |||||| | || | || ||||| || | ||||| | |
Sbjct 10663 TGCGGATGTCTTTGAGTTCTTGGACCTCCGAAAGAACCACGGCAAAGAGGAAGTTAGAGC 10722
Query 104695 CCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAG 104754
||||||||||||| || ||||||||||||||||||||||||||| | ||||| |||
Sbjct 10723 ACGCGATCTCTTCTATGCCCTCTGGATTCCAGATCTCTTCATGAAGCGTGTTGAAAAGAA 10782
Query 104755 TGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGGTGA 104814
|| | ||| | ||| | || || || | || || | | |||| | |||||
Sbjct 10783 CGGAGACTGGACACTCATGTGCCCTAACGAATGTCCAGGCTTGGCTGATGTCTATGGTGA 10842
Query 104815 GGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTC--GGGCGACTGCGACGGTG 104872
|| || || || || || | |||||| | ||||| || || | ||| |
Sbjct 10843 TGAATTCGAGGCTCTCTATGAAGGTTACGAGAGACAAGGTAAAGGTCG--TAAGACCATC 10900
Query 104873 CCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATAC 104932
||| | | ||| | | || || || | || || |||||||| | || | |
Sbjct 10901 AAGGCTCAAAAGCTTTGGTATTCCATCCTTGAGGCCCAGACTGAGACTGGAAACCCTTTC 10960
Query 104933 ATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAG 104992
|||||||||||||| || || ||| |||||||||| |||||||| | || |||
Sbjct 10961 ATGCTTTACAAAGATGCTTGCAACAAAAAGAGTAACCAAAAGAACCTCGGCACAATCCGT 11020
Query 104993 AGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGT 105052
|| ||||| | || ||||||||| | |||| | | |||||| ||| |||
Sbjct 11021 AGCTCCAACTTGTGCACAGAAATCGTCGAATACTCTGCACCGGATGAGGTTGCTTGCTGT 11080
Query 105053 AACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAG--ACATTTGATT 105110
||| | || || || |||||||| | | ||| | || | | | || | |||||
Sbjct 11081 AACTTGGCTTCTATTGCTCTCCCAACCTTTGTCAA--CATGGCTGAGGGAACTTATGATT 11138
Query 105111 ATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGATA 105170
|||| || || || || || ||| || |||| | |||| ||||||| |
Sbjct 11139 TCCAAAAGCTTCATGAGGTCGTTCAAGTTGTTGTCAGAAACTTGAACAAGATTATTGACA 11198
Query 105171 GAAATTTTTACCCCGTTG-AGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGT 105229
|| | || || || ||| ||| | || ||| | | ||||| || |||| |
Sbjct 11199 TCAACTACTATCCTGTCCCAGAA-GCTAGAAAGAGTAACTTCCGTCACCGACCTATTGCT 11257
Query 105230 CTCGGTGTTCAGGGTCTCGCGGATGTATTCAT---TCTTTGTCGCCACGCATTTGATTCC 105286
| |||||||||||||| || |||| ||| | ||| || | |||| |||||
Sbjct 11258 GTTGGTGTTCAGGGTCTTGCTGATGCCTTCCTGGCTCTCCGTTTGC---CATTCGATTCA 11314
Query 105287 GACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTGAG 105346
|| || || | | || | || || |||||||| || |||| || |||||
Sbjct 11315 CCTGAGGCCAAACATCTTAACATCCAGATTTTCGAGACCATCTACCACGGTGC-CTTGAC 11373
Query 105347 G-CGA--GTTCAGAGTTGGCAGAG-GTTGATGGTCCATATGAAACCTTTGAGGGTTCTCC 105402
|| ||||||| ||| || | |||| || |||||||| |||| || ||||||||
Sbjct 11374 TTCGTCTGTTCAGA-TTGCCAAGGAGTTG--GGCCCATATGAGACCTACGAAGGTTCTCC 11430
Query 105403 AGCTTCACAAGGG-GTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCTTCACTACG 105461
|| ||| |||||| | ||||||| ||||||||||| | | | | || || |
Sbjct 11431 AGTTTC-CAAGGGTGAACTTCAATATGATATGTGGGGTGTTACTCCTACAGATCTCTGGG 11489
Query 105462 ACTGGGA-AGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATG 105520
| ||||| ||| |||||| || |||||| | | ||| |||| |||||| | || |
Sbjct 11490 ATTGGGATAGC-CTCAAGCAATCTATCAAGCAACATGGTATTCGCAACAGTTTGCTTGTT 11548
Query 105521 GCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCC 105580
||||| |||||||| ||| || | ||||| | ||| || ||||| || || ||
Sbjct 11549 GCTCCTATGCCAACTGCCAGTACATCTCAAATTCTCGGTTTCAACGAATGTTTCGAGCCA 11608
Query 105581 TACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAAC--- 105637
||||| | ||||||||| | | || || |||||||| ||||||||
Sbjct 11609 TACACTTCCAACATCTATTCCCGTCGTGTGCTGGCCGGAGAGTTCCAAGTTGTCAACCCA 11668
Query 105638 AAGCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGATCTC 105697
|| |||| |||| || || || || || ||||| | | |||||| | | |
Sbjct 11669 TGGCTTCTCAAGGATTTGGTC---GACATGGGACTTTGGTCTGACAACATGAAGAACCGC 11725
Query 105698 ATGGTGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAAATGAAATTAAGAAG 105757
|| | | ||||| || |||||||| ||| | || ||| |||| | |||
Sbjct 11726 ATCATCGCTGACGGTGGATCTATTCAAAACATTCCCAACATCCCAGCTGAACTCAAGGCT 11785
Query 105758 TTGTACCGCACAGTTTGGGAAATCAAGATGAAGGATGTCATTG---ACATGGCCGCAGAT 105814
| ||| || |||||||||||| | || || ||||| | |||||||||||
Sbjct 11786 CTCTACAAGACTGTTTGGGAAATC--TCTCAACGA-AACATTGTTCAGATGGCCGCAGAC 11842
Query 105815 CGTGGTCGCTTCATTGATCAAAGTCAAAGTATGAATCTCTTCATGGAAAGTCCAACGATG 105874
|||||| ||||| |||||| |||| ||||| || |||| | || || |||
Sbjct 11843 CGTGGTGCTTTCATCGATCAATCTCAATCAATGAACATCCACATGAAGGACCCTACAATG 11902
Query 105875 TCCAAGCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACGGGGATGTAT 105934
|||| || |||| ||||| | | ||||| |||||||| || || |||||
Sbjct 11903 GGCAAGATCACTTCCATGCATTTTGCTGGATGGAAATTAGGTCTCAAGACTGGAATGTAC 11962
Query 105935 TACCTCCGATCTAAGGCAAAGGCGCGC-CCAATTCAGTTCAGTCTTGAACCAGAA 105988
|| ||||| ||| ||| | ||| |||||||| |||| |||| | ||||
Sbjct 11963 TATCTCCGTACTATGGCTGCTTC-CGCACCAATTCAATTCACCGTTGATCAAGAA 12016
>seq4745
Length=15183
Score = 163 bits (180), Expect = 3e-35
Identities = 357/525 (68%), Gaps = 26/525 (5%)
Strand=Plus/Minus
Query 94732 ACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGA---TACAAAG 94788
|||||||| || ||| | ||||| || || |||||| | | ||| |||| || ||
Sbjct 9208 ACAGTTCCTTGCATTAAGAAGAAGGCCGACTGGGCTGTTAGATGGATTGAGGATAAGAAC 9149
Query 94789 TCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCT 94848
|| | |||||||| | || ||| ||||||| || ||||| |||||||||||| |
Sbjct 9148 TC---TACCTTTGCTCAACGTCTCGTCGCATTCGCTGCCGTTGAAGGTATCTTCTTCAGT 9092
Query 94849 GGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTC 94908
||||||||| | |||||| |||||||||||||| || | ||| | |||||| |||
Sbjct 9091 GGTTCCTTCGCCTCTATTTTCTGGCTCAAGAAGCGTGGCTTGATGGCTGGTCTCACCTTT 9032
Query 94909 TCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGCGGTGGAACTTTTC 94968
||||||||||| ||||| ||||||||||| || || || || || || || ||
Sbjct 9031 TCCAACGAGCTCATCTCCCGTGACGAGGGTCTTCATACCGACTTCGC-CTG--CCTGCTC 8975
Query 94969 AAATTATTGCGTATTAAACCAACGACTGAG---ACTA----TTCATTCTATTGTTAAGGA 95021
|| | || || || || || | || || | |||| | || ||| ||
Sbjct 8974 ---TTCTCGC-ACTTGAAGCATCGCCCAAGCAAACAAGCCGTTCAGGATGTTATTACAGA 8919
Query 95022 AGCCGTTGAGATTGAGAAAGGATTCATATTGGATGCCCTTCCATGCGCTCTCATCGGTAT 95081
|| || |||||||| ||| |||| | ||| || |||||||| |||||| | || ||
Sbjct 8918 GGCTGTCCAGATTGAGCAAGAATTCTTGACGGAAGCTCTTCCATGTGCTCTCCTTGGCAT 8859
Query 95082 GAATTCTGAAAAAATGTCTGAATATATTGAGTATGTATCTGATAG-ATTGTTGAAGCAGA 95140
||| || || ||| |||| ||||||| || | || | || ||| ||
Sbjct 8858 GAACTCGGATTTGATGAAGCAATACATTGAGTTCGTCGCAGACCGTCTTCTTGTTGC--- 8802
Query 95141 TCGGGGTGCCTCCAA--TTTGGAACTCCAAGAATCCATTTGACTTCATGGAGAACATTAG 95198
|| ||| || ||| || |||||||| ||||||||||| ||||||
Sbjct 8801 TCTTGGTAATGAGAAGGTTTACCGATCAGCCAATCCATTCGACTTCATGGAAAACATTTC 8742
Query 95199 CCTCGACGGGAAGACAAACTTCTTCGAAAAGAGGGTTGGGGACTA 95243
|||| || ||||| ||||||||||| ||| | ||||| |||||
Sbjct 8741 TCTCGCAGGCAAGACCAACTTCTTCGAGAAGCGAGTTGGCGACTA 8697
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 583207249367800
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