Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20echinophila_20[genbank_20GCA_5F000812885.1_202014-12- 31] 7,345 sequences; 40,250,382 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq4887 282 5e-71 seq4745 163 3e-35 >seq4887 Length=16554 Score = 282 bits (312), Expect = 5e-71 Identities = 1158/1795 (65%), Gaps = 53/1795 (3%) Strand=Plus/Plus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 ||||| | ||| ||||||| || ||| | |||||||| || || || ||||| || | Sbjct 10247 CCACAACAAATGATCATGCGTGTTGCCGTTGGTATTCACGGTGATGATATTGAAAGTGCC 10306 Query 104282 TTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAACCCTCTT 104340 | || |||||| || ||||||| | | || || | ||||| | ||||| ||||| Sbjct 10307 ATCGAAACATACAACTTGATGTCCAACAAATACTTT-ACACACGCTTCTCCAACACTCTT 10365 Query 104341 CAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 104400 | ||| ||||| ||| | || | || ||||||||||| | | |||||||| Sbjct 10366 CTCTGCGGGTACTCCACAGGCTCAGCTTTCATCATGCTTCCTTATTGATATGAAGGAGGA 10425 Query 104401 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 104460 || | |||||||||| ||| | | | ||||| || |||||| ||||| Sbjct 10426 TAGTATTGATGGTATCTATGATACTTTGAAGATTTGTGCTATGATTTCAAAGAACGCTGG 10485 Query 104461 GGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAA 104520 |||||||| | ||||||| | | || | | | ||| || ||||| Sbjct 10486 TGGTATTGGTCTCAACATCCACAGAATCCGTGCTACTGGTGCCTACATTGCAGGCACAAA 10545 Query 104521 TGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGT 104580 ||| | || | ||||| |||| |||||||| || || ||| ||| || | ||||| Sbjct 10546 CGGTAACTCTAACGGTATCGTTCCTATGCTTCGAGTTTTCAACAACACCGCTAGATATGT 10605 Query 104581 AAATCAAGCTGGGCGTCGAAAGGGATCTATCGCA------GTCTATCTTGAGCCATGGCA 104634 | |||| ||| | ||| | || ||| || || ||||| |||||||| Sbjct 10606 CGACCAAGGTGG---TAACAAGCGCCCTGGTGCATTTGCCGTTTACCTTGAACCATGGCA 10662 Query 104635 CGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTG 104694 |||||| || | |||||| | || | || ||||| || | ||||| | | Sbjct 10663 TGCGGATGTCTTTGAGTTCTTGGACCTCCGAAAGAACCACGGCAAAGAGGAAGTTAGAGC 10722 Query 104695 CCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAG 104754 ||||||||||||| || ||||||||||||||||||||||||||| | ||||| ||| Sbjct 10723 ACGCGATCTCTTCTATGCCCTCTGGATTCCAGATCTCTTCATGAAGCGTGTTGAAAAGAA 10782 Query 104755 TGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGGTGA 104814 || | ||| | ||| | || || || | || || | | |||| | ||||| Sbjct 10783 CGGAGACTGGACACTCATGTGCCCTAACGAATGTCCAGGCTTGGCTGATGTCTATGGTGA 10842 Query 104815 GGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTC--GGGCGACTGCGACGGTG 104872 || || || || || || | |||||| | ||||| || || | ||| | Sbjct 10843 TGAATTCGAGGCTCTCTATGAAGGTTACGAGAGACAAGGTAAAGGTCG--TAAGACCATC 10900 Query 104873 CCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATAC 104932 ||| | | ||| | | || || || | || || |||||||| | || | | Sbjct 10901 AAGGCTCAAAAGCTTTGGTATTCCATCCTTGAGGCCCAGACTGAGACTGGAAACCCTTTC 10960 Query 104933 ATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAG 104992 |||||||||||||| || || ||| |||||||||| |||||||| | || ||| Sbjct 10961 ATGCTTTACAAAGATGCTTGCAACAAAAAGAGTAACCAAAAGAACCTCGGCACAATCCGT 11020 Query 104993 AGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGT 105052 || ||||| | || ||||||||| | |||| | | |||||| ||| ||| Sbjct 11021 AGCTCCAACTTGTGCACAGAAATCGTCGAATACTCTGCACCGGATGAGGTTGCTTGCTGT 11080 Query 105053 AACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAG--ACATTTGATT 105110 ||| | || || || |||||||| | | ||| | || | | | || | ||||| Sbjct 11081 AACTTGGCTTCTATTGCTCTCCCAACCTTTGTCAA--CATGGCTGAGGGAACTTATGATT 11138 Query 105111 ATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGATA 105170 |||| || || || || || ||| || |||| | |||| ||||||| | Sbjct 11139 TCCAAAAGCTTCATGAGGTCGTTCAAGTTGTTGTCAGAAACTTGAACAAGATTATTGACA 11198 Query 105171 GAAATTTTTACCCCGTTG-AGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGT 105229 || | || || || ||| ||| | || ||| | | ||||| || |||| | Sbjct 11199 TCAACTACTATCCTGTCCCAGAA-GCTAGAAAGAGTAACTTCCGTCACCGACCTATTGCT 11257 Query 105230 CTCGGTGTTCAGGGTCTCGCGGATGTATTCAT---TCTTTGTCGCCACGCATTTGATTCC 105286 | |||||||||||||| || |||| ||| | ||| || | |||| ||||| Sbjct 11258 GTTGGTGTTCAGGGTCTTGCTGATGCCTTCCTGGCTCTCCGTTTGC---CATTCGATTCA 11314 Query 105287 GACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTGAG 105346 || || || | | || | || || |||||||| || |||| || ||||| Sbjct 11315 CCTGAGGCCAAACATCTTAACATCCAGATTTTCGAGACCATCTACCACGGTGC-CTTGAC 11373 Query 105347 G-CGA--GTTCAGAGTTGGCAGAG-GTTGATGGTCCATATGAAACCTTTGAGGGTTCTCC 105402 || ||||||| ||| || | |||| || |||||||| |||| || |||||||| Sbjct 11374 TTCGTCTGTTCAGA-TTGCCAAGGAGTTG--GGCCCATATGAGACCTACGAAGGTTCTCC 11430 Query 105403 AGCTTCACAAGGG-GTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCTTCACTACG 105461 || ||| |||||| | ||||||| ||||||||||| | | | | || || | Sbjct 11431 AGTTTC-CAAGGGTGAACTTCAATATGATATGTGGGGTGTTACTCCTACAGATCTCTGGG 11489 Query 105462 ACTGGGA-AGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATG 105520 | ||||| ||| |||||| || |||||| | | ||| |||| |||||| | || | Sbjct 11490 ATTGGGATAGC-CTCAAGCAATCTATCAAGCAACATGGTATTCGCAACAGTTTGCTTGTT 11548 Query 105521 GCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCC 105580 ||||| |||||||| ||| || | ||||| | ||| || ||||| || || || Sbjct 11549 GCTCCTATGCCAACTGCCAGTACATCTCAAATTCTCGGTTTCAACGAATGTTTCGAGCCA 11608 Query 105581 TACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAAC--- 105637 ||||| | ||||||||| | | || || |||||||| |||||||| Sbjct 11609 TACACTTCCAACATCTATTCCCGTCGTGTGCTGGCCGGAGAGTTCCAAGTTGTCAACCCA 11668 Query 105638 AAGCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGATCTC 105697 || |||| |||| || || || || || ||||| | | |||||| | | | Sbjct 11669 TGGCTTCTCAAGGATTTGGTC---GACATGGGACTTTGGTCTGACAACATGAAGAACCGC 11725 Query 105698 ATGGTGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAAATGAAATTAAGAAG 105757 || | | ||||| || |||||||| ||| | || ||| |||| | ||| Sbjct 11726 ATCATCGCTGACGGTGGATCTATTCAAAACATTCCCAACATCCCAGCTGAACTCAAGGCT 11785 Query 105758 TTGTACCGCACAGTTTGGGAAATCAAGATGAAGGATGTCATTG---ACATGGCCGCAGAT 105814 | ||| || |||||||||||| | || || ||||| | ||||||||||| Sbjct 11786 CTCTACAAGACTGTTTGGGAAATC--TCTCAACGA-AACATTGTTCAGATGGCCGCAGAC 11842 Query 105815 CGTGGTCGCTTCATTGATCAAAGTCAAAGTATGAATCTCTTCATGGAAAGTCCAACGATG 105874 |||||| ||||| |||||| |||| ||||| || |||| | || || ||| Sbjct 11843 CGTGGTGCTTTCATCGATCAATCTCAATCAATGAACATCCACATGAAGGACCCTACAATG 11902 Query 105875 TCCAAGCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACGGGGATGTAT 105934 |||| || |||| ||||| | | ||||| |||||||| || || ||||| Sbjct 11903 GGCAAGATCACTTCCATGCATTTTGCTGGATGGAAATTAGGTCTCAAGACTGGAATGTAC 11962 Query 105935 TACCTCCGATCTAAGGCAAAGGCGCGC-CCAATTCAGTTCAGTCTTGAACCAGAA 105988 || ||||| ||| ||| | ||| |||||||| |||| |||| | |||| Sbjct 11963 TATCTCCGTACTATGGCTGCTTC-CGCACCAATTCAATTCACCGTTGATCAAGAA 12016 >seq4745 Length=15183 Score = 163 bits (180), Expect = 3e-35 Identities = 357/525 (68%), Gaps = 26/525 (5%) Strand=Plus/Minus Query 94732 ACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGA---TACAAAG 94788 |||||||| || ||| | ||||| || || |||||| | | ||| |||| || || Sbjct 9208 ACAGTTCCTTGCATTAAGAAGAAGGCCGACTGGGCTGTTAGATGGATTGAGGATAAGAAC 9149 Query 94789 TCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCT 94848 || | |||||||| | || ||| ||||||| || ||||| |||||||||||| | Sbjct 9148 TC---TACCTTTGCTCAACGTCTCGTCGCATTCGCTGCCGTTGAAGGTATCTTCTTCAGT 9092 Query 94849 GGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTC 94908 ||||||||| | |||||| |||||||||||||| || | ||| | |||||| ||| Sbjct 9091 GGTTCCTTCGCCTCTATTTTCTGGCTCAAGAAGCGTGGCTTGATGGCTGGTCTCACCTTT 9032 Query 94909 TCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGCGGTGGAACTTTTC 94968 ||||||||||| ||||| ||||||||||| || || || || || || || || Sbjct 9031 TCCAACGAGCTCATCTCCCGTGACGAGGGTCTTCATACCGACTTCGC-CTG--CCTGCTC 8975 Query 94969 AAATTATTGCGTATTAAACCAACGACTGAG---ACTA----TTCATTCTATTGTTAAGGA 95021 || | || || || || || | || || | |||| | || ||| || Sbjct 8974 ---TTCTCGC-ACTTGAAGCATCGCCCAAGCAAACAAGCCGTTCAGGATGTTATTACAGA 8919 Query 95022 AGCCGTTGAGATTGAGAAAGGATTCATATTGGATGCCCTTCCATGCGCTCTCATCGGTAT 95081 || || |||||||| ||| |||| | ||| || |||||||| |||||| | || || Sbjct 8918 GGCTGTCCAGATTGAGCAAGAATTCTTGACGGAAGCTCTTCCATGTGCTCTCCTTGGCAT 8859 Query 95082 GAATTCTGAAAAAATGTCTGAATATATTGAGTATGTATCTGATAG-ATTGTTGAAGCAGA 95140 ||| || || ||| |||| ||||||| || | || | || ||| || Sbjct 8858 GAACTCGGATTTGATGAAGCAATACATTGAGTTCGTCGCAGACCGTCTTCTTGTTGC--- 8802 Query 95141 TCGGGGTGCCTCCAA--TTTGGAACTCCAAGAATCCATTTGACTTCATGGAGAACATTAG 95198 || ||| || ||| || |||||||| ||||||||||| |||||| Sbjct 8801 TCTTGGTAATGAGAAGGTTTACCGATCAGCCAATCCATTCGACTTCATGGAAAACATTTC 8742 Query 95199 CCTCGACGGGAAGACAAACTTCTTCGAAAAGAGGGTTGGGGACTA 95243 |||| || ||||| ||||||||||| ||| | ||||| ||||| Sbjct 8741 TCTCGCAGGCAAGACCAACTTCTTCGAGAAGCGAGTTGGCGACTA 8697 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583207249367800