Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20echinophila_20[genbank_20GCA_5F000812885.1_202014-12- 31] 7,345 sequences; 40,250,382 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq894 161 3e-34 seq78 149 2e-30 seq5062 145 2e-29 seq4803 134 4e-26 seq5771 122 3e-22 seq4570 118 3e-21 seq5547 113 1e-19 seq5020 104 7e-17 seq2353 93.3 1e-13 seq4887 84.2 7e-11 >seq894 Length=6424 Score = 161 bits (178), Expect = 3e-34 Identities = 179/236 (76%), Gaps = 2/236 (1%) Strand=Plus/Plus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| ||| |||||||| | | ||||| | ||| | ||| ||||| |||||||| || | Sbjct 3431 TTTGCATTCCACCACGAAGGCGAAGAACCAAATGTAAAGTCGACTCCTTTTGAATGTTGT 3490 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || || | || || ||||| || | || || ||||| ||||| |||||||| |||| Sbjct 3491 AGTCCGACAGGGTACGGCCATCCTCCAACTGCTTACCAGCGAAGATGAGACGTTGTTGAT 3550 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT-TTTACATTATCAATCGAATCAGAT 140681 |||| ||||| ||||| || || ||||| || ||| ||||| || || || | ||||||| Sbjct 3551 CAGGTGGAATGCCTTCCTTGTCTTGAATCTT-GCTCTTTACGTTGTCGATAGTATCAGAT 3609 Query 140682 GGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | ||||| || | || | |||||||||||| || || || || ||||||||||| Sbjct 3610 GACTCAACCTCCAAAGTGATTGTCTTTCCGGTAAGAGTCTTGACGAAAATCTGCAT 3665 Score = 138 bits (152), Expect = 3e-27 Identities = 162/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | ||| ||||| | ||| | ||| || || || || || || || || Sbjct 3663 CATACCACCACGAAGTCTCAGAACCAAATGTAAAGTCGATTCCTTCTGGATGTTGTAGTC 3722 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || || || |||||||| || ||||| ||||| | |||||| |||||||| Sbjct 3723 GGAAAGAGTGCGGCCGTCCTCAAGTTGCTTGCCAGCGAAGATCAAACGTTGTTGATCAGG 3782 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 || || || || ||||| ||||| || | || ||||| || || | ||| || | ||| Sbjct 3783 GGGGATACCCTCCTTATCTTGAATCTTGGTCTTAACATTGTCGATAGTATCCGAAGATTC 3842 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTAC 140725 ||| ||||| || | ||||| ||||| || || || || Sbjct 3843 AACCTCAAGAGTGATAGTCTTGCCGGTGAGAGTCTTGAC 3881 Score = 132 bits (146), Expect = 1e-25 Identities = 156/211 (74%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||| ||||| | | || || ||||| ||||||||||| || || || || | Sbjct 3943 TTTGCATACCGCCACGAAGACGGAGGACGAGATGGAGAGTAGACTCCTTCTGGATGTTGT 4002 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || || || || ||||| || ||||| || ||||||||||| | ||| || || | Sbjct 4003 AGTCGCTCAAAGTACGACCATCCTCGAGTTGCTTGCCAGCAAAGATCAAACGCTGTTGGT 4062 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 |||||||||| || || |||||||| || |||| || || || || || | || || | Sbjct 4063 CAGGAGGAATACCCTCCTTATCCTGGATCTTAGTCTTGACGTTGTCGATAGTGTCGGAAG 4122 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGT 140713 |||||| ||||| || | ||||| ||||| Sbjct 4123 ATTCAACCTCAAGGGTGATGGTCTTGCCGGT 4153 >seq78 Length=25977 Score = 149 bits (164), Expect = 2e-30 Identities = 283/417 (68%), Gaps = 0/417 (0%) Strand=Plus/Minus Query 349484 AAACCAATTATTGAGGTTGAATATAAAGGTGAACAAAAACAATTTTTACCCGAAGAAATT 349543 || ||| | ||||||||||| | || || || ||||| ||||| ||| || || || Sbjct 25866 AAGCCAGTCATTGAGGTTGAGTTCAAGGGAGAGCAAAAGCAATTCACACCTGAGGAGATC 25807 Query 349544 TCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTA 349603 ||||| ||||| || || || |||| || | |||||| || || | |||| ||| || Sbjct 25806 TCATCTATGGTCTTGGTCAAGATGAGAGAGACTGCTGAGGCTTACCTTGGTGGAACTGTC 25747 Query 349604 ACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAA 349663 | | ||||| | || || ||||| || || | || | || ||| || ||||| Sbjct 25746 AACAACGCTGTCGTCACCGTCCCAGCATACTTCACCGACTCTCAACGTCAAGCCACAAAG 25687 Query 349664 GATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCA 349723 || ||||| ||||| || | || ||||| ||||| ||||| || || || || || Sbjct 25686 GACGCTGGTCTGATTGCTGGTCTTAACGTTCTCAGAATCATTAACGAGCCTACCGCAGCC 25627 Query 349724 GCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGAT 349783 || ||||| || || | || || | | || ||| || |||| || || ||| Sbjct 25626 GCCATTGCTTACGGTTTGGACAAGAAGGTCGAGGGTGAACGTAACGTTCTCATCTTCGAT 25567 Query 349784 TTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTT 349843 | ||||| || ||||| ||||| || || | || | || || || || || || ||| Sbjct 25566 CTTGGTGGAGGAACTTTCGATGTCTCTCTCTTGACCATCGAGGAAGGTATCTTCGAGGTT 25507 Query 349844 AAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTT 349900 || | ||||| ||||| || || | ||||| || || || || || ||||| ||| Sbjct 25506 AAGTCCACTGCCGGTGACACTCACTTGGGTGGTGAGGACTTCGACAACCGTCTTGTT 25450 >seq5062 Length=19932 Score = 145 bits (160), Expect = 2e-29 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569 ||| |||||||| | || || | |||||||| ||||| || || || || ||||| || Sbjct 11077 ACCTCCACGTAAACGCAGGACCAAGTGAAGAGTCGACTCCTTCTGGATGTTGTAATCGGA 11136 Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629 | || || |||||||| ||||| || || || |||||||||||||| |||||||| || Sbjct 11137 AAGAGTGCGGCCATCTTCGAGTTGCTTGCCGGCGAAGATTAGACGTTGTTGATCAGGTGG 11196 Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAAC 140689 ||||| || |||||||| || || | ||| |||||||| || | || || | || || Sbjct 11197 GATTCCCTCCTTATCCTGGATCTTGGTTTTGACATTATCGATAGTGTCGGAGGACTCGAC 11256 Query 140690 TTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || | || || || || || || || || || |||||||| Sbjct 11257 CTCTAGGGTGATGGTTTTACCCGTGAGGGTCTTGACGAAGATCTGCAT 11304 >seq4803 Length=18444 Score = 134 bits (148), Expect = 4e-26 Identities = 253/369 (69%), Gaps = 21/369 (6%) Strand=Plus/Minus Query 349201 TATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGTGT 349260 ||| || |||||||| ||||| || || |||||||| | | | | | |||| | | Sbjct 359 TATCGGTATCGATTTGGGTACCACCTACTCTTGTGTAGGTATCTTCAGAGATGACAGAAT 300 Query 349261 AGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGA 349320 ||||| ||||| ||||| ||||| ||| |||| || || || | |||||| || ||||| Sbjct 299 CGAAATTATTGCCAATGACCAAGGAAACCGAACCACTCCTTCGTTCGTTGCTTTCACCGA 240 Query 349321 AACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATAC 349380 ||||||||| ||||||| ||| | || || || |||| ||| || ||| | || || Sbjct 239 TACTGAGCGTTTGATTGGAGATGCCGCCAAGAACCAAGTCGCTATGAACCCATACAACAC 180 Query 349381 GGTTTTTGATGCTAAGCGACTTATTGGTAG-AAGTT-----TTTCTGACAAATCTACACA 349434 || || ||||||||||| | || ||| | ||||| | ||| || || || Sbjct 179 CGTCTTCGATGCTAAGCGTTTAATCGGTCGCAAGTTCGCAGATGCTG--AAGTC----CA 126 Query 349435 ATCTGATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGAT---AAACCAAT 349491 | | || | || ||||| || || | || || ||| ||| | || ||| | Sbjct 125 AGCCGACATGAAGCATTTCCCATTCAAGGTCATT------GACCGTGCTGGAAAGCCAGT 72 Query 349492 TATTGAGGTTGAATATAAAGGTGAACAAAAACAATTTTTACCCGAAGAAATTTCATCAAT 349551 ||||||||||| | || || || ||||| ||||| ||| || || || ||||| || Sbjct 71 CATTGAGGTTGAGTTCAAGGGAGAGCAAAAGCAATTCACACCTGAGGAGATCTCATCTAT 12 Query 349552 GGTTTTAGT 349560 ||| || || Sbjct 11 GGTCTTGGT 3 >seq5771 Length=11851 Score = 122 bits (134), Expect = 3e-22 Identities = 139/187 (74%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 140550 TTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATT 140609 ||||| || ||||||||||| || || || ||||| |||||||| |||||||| ||||| Sbjct 7519 TTTTGGATGTTATAATCAGACAAAGTGCGTCCATCCTCAAGTTGCTTTCCAGCGAAGATC 7578 Query 140610 AGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCA 140669 | |||||| ||||| || |||||||| || || || ||||| || | || ||||| || Sbjct 7579 AAACGTTGTTGATCCGGGGGAATTCCCTCCTTGTCTTGAATCTTGGTCTTGACATTGTCG 7638 Query 140670 ATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAA 140729 || | || || | ||| || ||||| || | ||||| || || | || || || || Sbjct 7639 ATGGTGTCGGAGGATTCGACCTCAAGGGTGATGGTCTTACCCGTCAAGGTCTTGACGAAG 7698 Query 140730 ATCTGCA 140736 | |||| Sbjct 7699 CTATGCA 7705 >seq4570 Length=38393 Score = 118 bits (130), Expect = 3e-21 Identities = 188/270 (70%), Gaps = 0/270 (0%) Strand=Plus/Minus Query 378120 ATCAAATCCATCATCTCCATATGAGAATTGAACAATTTTATCTTTATTGTTTCTTACAGT 378179 ||| || ||||| || ||||| |||||| || || | | | ||||| ||||| Sbjct 2231 ATCTAAACCATCTTCGCCATAGACGAATTGCACGATATCTCCGAGAGAGTTTCGCACAGT 2172 Query 378180 CATATCATATCTAACCATTAAATCTTCTAATGCTTTAATAAGTCGTCGAGAAATATAACC 378239 || || || |||| | ||| || | || || | || || || |||||||| Sbjct 2171 GCCGTCGTACTTAGCCATAACATCCTCAAGGGCCTTGACGAGACGACGCTGGATATAACC 2112 Query 378240 AGTTTGACTAGTTTTAACTGCAGTATCAATTAAACCAACACGACCACCCATTGCATGGAA 378299 |||| |||||| |||||||||||||| ||||| |||||||| |||| || ||||| Sbjct 2111 TGTTTCGGCAGTTTTTACTGCAGTATCAATCAAACCTTCACGACCAGCCATGGCGTGGAA 2052 Query 378300 GAATAATTCAGTAGGAGTAAGTCCACCAATAAATGAACTCTCAATAAATCCTCTTGCGCC 378359 ||| |||||||| ||||| ||||| | || ||||| |||| | || ||||||| | Sbjct 2051 GAAGAATTCAGTTGGAGTGAGTCCTCTAAGGTATGAATTCTCTACGAAACCTCTTGATTC 1992 Query 378360 TGGCGAATCATCATATTTTGTATAATGAGG 378389 || |||| ||| | || || |||| || Sbjct 1991 GGGAGAATAATCGTCCTTGGTGAAATGCGG 1962 >seq5547 Length=23933 Score = 113 bits (124), Expect = 1e-19 Identities = 223/327 (68%), Gaps = 5/327 (2%) Strand=Plus/Minus Query 349565 ATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTACTGTA 349624 ||||||||| |||| |||| | || || | | || | | || || || ||||| Sbjct 9776 ATGAAGGAAGTTGCCGAAGTTAAGTTGGGCAAGAAGGTTTCCAAGGCCGTCATCACTGTT 9717 Query 349625 CCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCGGGG 349684 |||||||| || || || ||| ||| || || || |||||||| |||||| || Sbjct 9716 CCAGCCTACTTCAACGACAACCAACGTCAGGCTACCAAGGATGCTGGTGCCATTGCCGGT 9657 Query 349685 TTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCT---T 349741 | || || || | || ||||| |||||||||||||| || || ||||| || || | Sbjct 9656 CTCAACGTCCTCCGTATCATTAACGAACCCACTGCTGCTGCCATCGCATACGGTCTTGGT 9597 Query 349742 GATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTT 349801 | | || || || | || ||| |||| || | |||| | |||||||| ||||| Sbjct 9596 GCTGGAAAGACCAACAAGGAGCGAAACGTTCTCATCTATGATCTCGGTGGTGGAACTTTC 9537 Query 349802 GATGTATCACTACT-AACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGA 349860 ||||| || || | |||| || ||| || | || ||||| || ||||||||||| Sbjct 9536 GATGTTTCCCTCTTGAACA-TTCAAGGTGGTGTCTTCACCGTTAAGGCTACTGCTGGTGA 9478 Query 349861 TACACATCTTGGTGGAGAAGATTTTGA 349887 || || | || || ||||||| || Sbjct 9477 CACTCACTTGGGAGGTCAAGATTTCGA 9451 >seq5020 Length=13931 Score = 104 bits (114), Expect = 7e-17 Identities = 246/365 (67%), Gaps = 10/365 (3%) Strand=Plus/Plus Query 349562 AAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTACT 349621 || |||||||| | ||| ||||||||| | | | || | || ||| | ||| Sbjct 1581 AAGATGAAGGAGACTGCGGAAGCATATCTCACAAAGCCTGTTCAAAACGCCGTTGTCACT 1640 Query 349622 GTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCG 349681 || || || || || || || |||| || || || ||||||||||| ||||| Sbjct 1641 GTTCCCGCTTACTTCAACGACTCCCAACGCCAGGCGACCAAAGATGCTGGTCAAATTGCC 1700 Query 349682 GGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTT 349741 || || || ||||| ||| | | || || || || || || ||| |||||||||| ||| Sbjct 1701 GGTTTGAACGTTCTTAGAGTCGTCAACGAGCCAACCGCAGCTGCACTTGCATATGGCCTT 1760 Query 349742 GATAAA-ATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTT 349800 || ||| ||||| || ||||| | | || | ||||| ||||| |||||||| Sbjct 1761 GAGAAAGATGAG-GA-CAAGATCATCGCAGTC-----TACGATTTGGGTGGAGGTACTTT 1813 Query 349801 TGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGA 349860 |||| | || | || || | |||| | || ||||| ||| | || ||||| Sbjct 1814 TGATATCTCTGTTCTCGAGATTCAGAAGGGTGTCTTCGAAGTCAAATCTACCAACGGTGA 1873 Query 349861 TACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCG-CATTTTGTTAAAGAAT 349919 |||||| | || || |||||||| ||| ||| || | |||| || || ||| || ||| Sbjct 1874 TACACACTTGGGAGGTGAAGATTTCGAT-ATCCACTTGGTTCGCCACTTGGTTCAACAAT 1932 Query 349920 TTAAG 349924 | ||| Sbjct 1933 TCAAG 1937 >seq2353 Length=2042 Score = 93.3 bits (102), Expect = 1e-13 Identities = 217/327 (66%), Gaps = 3/327 (1%) Strand=Plus/Plus Query 349562 AAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTACT 349621 |||||||||||| | || ||| |||| ||||| | | || || | || ||| ||||| Sbjct 251 AAAATGAAGGAAGTCGCCGAATCATACTTAGGAAAGAAGGTCACCCACGCAGTTGTTACT 310 Query 349622 GTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCG 349681 || ||||| || || || ||| ||| | ||||| || || || || ||| || Sbjct 311 GTTCCAGCATACTTCAACGATAACCAAAGACAAGCAACCAAGGACGCCGGTGTCATCGCT 370 Query 349682 GGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTT 349741 || || | ||||| | || |||| ||||| || || ||||| ||||| || || | Sbjct 371 GGTTTGGAAGTTCTCCGTATCGTTAACGAACCTACCGCCGCAGCTATTGCCTACGGTTTG 430 Query 349742 GATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTT 349801 ||||| || ||| |||| | ||| | | | ||| | ||||| || ||||| Sbjct 431 GATAA---GACTGATGGAGAACGTCAAATTATCGTCTACGATCTCGGTGGAGGAACTTTC 487 Query 349802 GATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGAT 349861 ||||| || || || | | || || |||| || ||| | || || ||||| Sbjct 488 GATGTTTCCCTTCTTTCTATCGACCGTGGTGTTTTCGAGGTTCTTTCTACCGCCGGTGAC 547 Query 349862 ACACATCTTGGTGGAGAAGATTTTGAT 349888 || || | || ||||||||||| ||| Sbjct 548 ACTCACTTGGGAGGAGAAGATTTCGAT 574 >seq4887 Length=16554 Score = 84.2 bits (92), Expect = 7e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 202739 ATGGTTCAAAACATTCATTATTACCTAAAATTTGACTGGTACTAGCAGTTGGCATAGGTG 202798 |||| || |||||||| || ||| | ||||||| ||||| |||||||||||||| | Sbjct 11609 ATGGCTCGAAACATTCGTTGAAACCGAGAATTTGAGATGTACTGGCAGTTGGCATAGGAG 11550 Query 202799 CAACTAGTAAACTATTGCGAAGCCCATATTCTTTAATACTATGTTTAAGAGTATTCCAAT 202858 |||| || ||||| ||||||| |||| || || ||| || || || ||| ||||| Sbjct 11549 CAACAAGCAAACTGTTGCGAATACCATGTTGCTTGATAGATTGCTTGAGGCTATCCCAAT 11490 Query 202859 C 202859 | Sbjct 11489 C 11489 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515111802723035