Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rutstroemia_20echinophila_20[genbank_20GCA_5F000812885.1_202014-12-
31] 7,345 sequences; 40,250,382 total letters
Query= NC_028094.1
Length=473558
Score E
Sequences producing significant alignments: (Bits) Value
seq894 161 3e-34
seq78 149 2e-30
seq5062 145 2e-29
seq4803 134 4e-26
seq5771 122 3e-22
seq4570 118 3e-21
seq5547 113 1e-19
seq5020 104 7e-17
seq2353 93.3 1e-13
seq4887 84.2 7e-11
>seq894
Length=6424
Score = 161 bits (178), Expect = 3e-34
Identities = 179/236 (76%), Gaps = 2/236 (1%)
Strand=Plus/Plus
Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562
||| ||| |||||||| | | ||||| | ||| | ||| ||||| |||||||| || |
Sbjct 3431 TTTGCATTCCACCACGAAGGCGAAGAACCAAATGTAAAGTCGACTCCTTTTGAATGTTGT 3490
Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622
| || || | || || ||||| || | || || ||||| ||||| |||||||| ||||
Sbjct 3491 AGTCCGACAGGGTACGGCCATCCTCCAACTGCTTACCAGCGAAGATGAGACGTTGTTGAT 3550
Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT-TTTACATTATCAATCGAATCAGAT 140681
|||| ||||| ||||| || || ||||| || ||| ||||| || || || | |||||||
Sbjct 3551 CAGGTGGAATGCCTTCCTTGTCTTGAATCTT-GCTCTTTACGTTGTCGATAGTATCAGAT 3609
Query 140682 GGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
| ||||| || | || | |||||||||||| || || || || |||||||||||
Sbjct 3610 GACTCAACCTCCAAAGTGATTGTCTTTCCGGTAAGAGTCTTGACGAAAATCTGCAT 3665
Score = 138 bits (152), Expect = 3e-27
Identities = 162/219 (74%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566
|||||||||||| | ||| ||||| | ||| | ||| || || || || || || || ||
Sbjct 3663 CATACCACCACGAAGTCTCAGAACCAAATGTAAAGTCGATTCCTTCTGGATGTTGTAGTC 3722
Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626
|| | || || || || |||||||| || ||||| ||||| | |||||| ||||||||
Sbjct 3723 GGAAAGAGTGCGGCCGTCCTCAAGTTGCTTGCCAGCGAAGATCAAACGTTGTTGATCAGG 3782
Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686
|| || || || ||||| ||||| || | || ||||| || || | ||| || | |||
Sbjct 3783 GGGGATACCCTCCTTATCTTGAATCTTGGTCTTAACATTGTCGATAGTATCCGAAGATTC 3842
Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTAC 140725
||| ||||| || | ||||| ||||| || || || ||
Sbjct 3843 AACCTCAAGAGTGATAGTCTTGCCGGTGAGAGTCTTGAC 3881
Score = 132 bits (146), Expect = 1e-25
Identities = 156/211 (74%), Gaps = 0/211 (0%)
Strand=Plus/Plus
Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562
||| |||||| ||||| | | || || ||||| ||||||||||| || || || || |
Sbjct 3943 TTTGCATACCGCCACGAAGACGGAGGACGAGATGGAGAGTAGACTCCTTCTGGATGTTGT 4002
Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622
| || || || || ||||| || ||||| || ||||||||||| | ||| || || |
Sbjct 4003 AGTCGCTCAAAGTACGACCATCCTCGAGTTGCTTGCCAGCAAAGATCAAACGCTGTTGGT 4062
Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682
|||||||||| || || |||||||| || |||| || || || || || | || || |
Sbjct 4063 CAGGAGGAATACCCTCCTTATCCTGGATCTTAGTCTTGACGTTGTCGATAGTGTCGGAAG 4122
Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGT 140713
|||||| ||||| || | ||||| |||||
Sbjct 4123 ATTCAACCTCAAGGGTGATGGTCTTGCCGGT 4153
>seq78
Length=25977
Score = 149 bits (164), Expect = 2e-30
Identities = 283/417 (68%), Gaps = 0/417 (0%)
Strand=Plus/Minus
Query 349484 AAACCAATTATTGAGGTTGAATATAAAGGTGAACAAAAACAATTTTTACCCGAAGAAATT 349543
|| ||| | ||||||||||| | || || || ||||| ||||| ||| || || ||
Sbjct 25866 AAGCCAGTCATTGAGGTTGAGTTCAAGGGAGAGCAAAAGCAATTCACACCTGAGGAGATC 25807
Query 349544 TCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTA 349603
||||| ||||| || || || |||| || | |||||| || || | |||| ||| ||
Sbjct 25806 TCATCTATGGTCTTGGTCAAGATGAGAGAGACTGCTGAGGCTTACCTTGGTGGAACTGTC 25747
Query 349604 ACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAA 349663
| | ||||| | || || ||||| || || | || | || ||| || |||||
Sbjct 25746 AACAACGCTGTCGTCACCGTCCCAGCATACTTCACCGACTCTCAACGTCAAGCCACAAAG 25687
Query 349664 GATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCA 349723
|| ||||| ||||| || | || ||||| ||||| ||||| || || || || ||
Sbjct 25686 GACGCTGGTCTGATTGCTGGTCTTAACGTTCTCAGAATCATTAACGAGCCTACCGCAGCC 25627
Query 349724 GCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGAT 349783
|| ||||| || || | || || | | || ||| || |||| || || |||
Sbjct 25626 GCCATTGCTTACGGTTTGGACAAGAAGGTCGAGGGTGAACGTAACGTTCTCATCTTCGAT 25567
Query 349784 TTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTT 349843
| ||||| || ||||| ||||| || || | || | || || || || || || |||
Sbjct 25566 CTTGGTGGAGGAACTTTCGATGTCTCTCTCTTGACCATCGAGGAAGGTATCTTCGAGGTT 25507
Query 349844 AAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTT 349900
|| | ||||| ||||| || || | ||||| || || || || || ||||| |||
Sbjct 25506 AAGTCCACTGCCGGTGACACTCACTTGGGTGGTGAGGACTTCGACAACCGTCTTGTT 25450
>seq5062
Length=19932
Score = 145 bits (160), Expect = 2e-29
Identities = 169/228 (74%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569
||| |||||||| | || || | |||||||| ||||| || || || || ||||| ||
Sbjct 11077 ACCTCCACGTAAACGCAGGACCAAGTGAAGAGTCGACTCCTTCTGGATGTTGTAATCGGA 11136
Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629
| || || |||||||| ||||| || || || |||||||||||||| |||||||| ||
Sbjct 11137 AAGAGTGCGGCCATCTTCGAGTTGCTTGCCGGCGAAGATTAGACGTTGTTGATCAGGTGG 11196
Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAAC 140689
||||| || |||||||| || || | ||| |||||||| || | || || | || ||
Sbjct 11197 GATTCCCTCCTTATCCTGGATCTTGGTTTTGACATTATCGATAGTGTCGGAGGACTCGAC 11256
Query 140690 TTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
|| || || | || || || || || || || || || ||||||||
Sbjct 11257 CTCTAGGGTGATGGTTTTACCCGTGAGGGTCTTGACGAAGATCTGCAT 11304
>seq4803
Length=18444
Score = 134 bits (148), Expect = 4e-26
Identities = 253/369 (69%), Gaps = 21/369 (6%)
Strand=Plus/Minus
Query 349201 TATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGTGT 349260
||| || |||||||| ||||| || || |||||||| | | | | | |||| | |
Sbjct 359 TATCGGTATCGATTTGGGTACCACCTACTCTTGTGTAGGTATCTTCAGAGATGACAGAAT 300
Query 349261 AGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGA 349320
||||| ||||| ||||| ||||| ||| |||| || || || | |||||| || |||||
Sbjct 299 CGAAATTATTGCCAATGACCAAGGAAACCGAACCACTCCTTCGTTCGTTGCTTTCACCGA 240
Query 349321 AACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATAC 349380
||||||||| ||||||| ||| | || || || |||| ||| || ||| | || ||
Sbjct 239 TACTGAGCGTTTGATTGGAGATGCCGCCAAGAACCAAGTCGCTATGAACCCATACAACAC 180
Query 349381 GGTTTTTGATGCTAAGCGACTTATTGGTAG-AAGTT-----TTTCTGACAAATCTACACA 349434
|| || ||||||||||| | || ||| | ||||| | ||| || || ||
Sbjct 179 CGTCTTCGATGCTAAGCGTTTAATCGGTCGCAAGTTCGCAGATGCTG--AAGTC----CA 126
Query 349435 ATCTGATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGAT---AAACCAAT 349491
| | || | || ||||| || || | || || ||| ||| | || ||| |
Sbjct 125 AGCCGACATGAAGCATTTCCCATTCAAGGTCATT------GACCGTGCTGGAAAGCCAGT 72
Query 349492 TATTGAGGTTGAATATAAAGGTGAACAAAAACAATTTTTACCCGAAGAAATTTCATCAAT 349551
||||||||||| | || || || ||||| ||||| ||| || || || ||||| ||
Sbjct 71 CATTGAGGTTGAGTTCAAGGGAGAGCAAAAGCAATTCACACCTGAGGAGATCTCATCTAT 12
Query 349552 GGTTTTAGT 349560
||| || ||
Sbjct 11 GGTCTTGGT 3
>seq5771
Length=11851
Score = 122 bits (134), Expect = 3e-22
Identities = 139/187 (74%), Gaps = 0/187 (0%)
Strand=Plus/Plus
Query 140550 TTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATT 140609
||||| || ||||||||||| || || || ||||| |||||||| |||||||| |||||
Sbjct 7519 TTTTGGATGTTATAATCAGACAAAGTGCGTCCATCCTCAAGTTGCTTTCCAGCGAAGATC 7578
Query 140610 AGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCA 140669
| |||||| ||||| || |||||||| || || || ||||| || | || ||||| ||
Sbjct 7579 AAACGTTGTTGATCCGGGGGAATTCCCTCCTTGTCTTGAATCTTGGTCTTGACATTGTCG 7638
Query 140670 ATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAA 140729
|| | || || | ||| || ||||| || | ||||| || || | || || || ||
Sbjct 7639 ATGGTGTCGGAGGATTCGACCTCAAGGGTGATGGTCTTACCCGTCAAGGTCTTGACGAAG 7698
Query 140730 ATCTGCA 140736
| ||||
Sbjct 7699 CTATGCA 7705
>seq4570
Length=38393
Score = 118 bits (130), Expect = 3e-21
Identities = 188/270 (70%), Gaps = 0/270 (0%)
Strand=Plus/Minus
Query 378120 ATCAAATCCATCATCTCCATATGAGAATTGAACAATTTTATCTTTATTGTTTCTTACAGT 378179
||| || ||||| || ||||| |||||| || || | | | ||||| |||||
Sbjct 2231 ATCTAAACCATCTTCGCCATAGACGAATTGCACGATATCTCCGAGAGAGTTTCGCACAGT 2172
Query 378180 CATATCATATCTAACCATTAAATCTTCTAATGCTTTAATAAGTCGTCGAGAAATATAACC 378239
|| || || |||| | ||| || | || || | || || || ||||||||
Sbjct 2171 GCCGTCGTACTTAGCCATAACATCCTCAAGGGCCTTGACGAGACGACGCTGGATATAACC 2112
Query 378240 AGTTTGACTAGTTTTAACTGCAGTATCAATTAAACCAACACGACCACCCATTGCATGGAA 378299
|||| |||||| |||||||||||||| ||||| |||||||| |||| || |||||
Sbjct 2111 TGTTTCGGCAGTTTTTACTGCAGTATCAATCAAACCTTCACGACCAGCCATGGCGTGGAA 2052
Query 378300 GAATAATTCAGTAGGAGTAAGTCCACCAATAAATGAACTCTCAATAAATCCTCTTGCGCC 378359
||| |||||||| ||||| ||||| | || ||||| |||| | || ||||||| |
Sbjct 2051 GAAGAATTCAGTTGGAGTGAGTCCTCTAAGGTATGAATTCTCTACGAAACCTCTTGATTC 1992
Query 378360 TGGCGAATCATCATATTTTGTATAATGAGG 378389
|| |||| ||| | || || |||| ||
Sbjct 1991 GGGAGAATAATCGTCCTTGGTGAAATGCGG 1962
>seq5547
Length=23933
Score = 113 bits (124), Expect = 1e-19
Identities = 223/327 (68%), Gaps = 5/327 (2%)
Strand=Plus/Minus
Query 349565 ATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTACTGTA 349624
||||||||| |||| |||| | || || | | || | | || || || |||||
Sbjct 9776 ATGAAGGAAGTTGCCGAAGTTAAGTTGGGCAAGAAGGTTTCCAAGGCCGTCATCACTGTT 9717
Query 349625 CCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCGGGG 349684
|||||||| || || || ||| ||| || || || |||||||| |||||| ||
Sbjct 9716 CCAGCCTACTTCAACGACAACCAACGTCAGGCTACCAAGGATGCTGGTGCCATTGCCGGT 9657
Query 349685 TTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCT---T 349741
| || || || | || ||||| |||||||||||||| || || ||||| || || |
Sbjct 9656 CTCAACGTCCTCCGTATCATTAACGAACCCACTGCTGCTGCCATCGCATACGGTCTTGGT 9597
Query 349742 GATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTT 349801
| | || || || | || ||| |||| || | |||| | |||||||| |||||
Sbjct 9596 GCTGGAAAGACCAACAAGGAGCGAAACGTTCTCATCTATGATCTCGGTGGTGGAACTTTC 9537
Query 349802 GATGTATCACTACT-AACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGA 349860
||||| || || | |||| || ||| || | || ||||| || |||||||||||
Sbjct 9536 GATGTTTCCCTCTTGAACA-TTCAAGGTGGTGTCTTCACCGTTAAGGCTACTGCTGGTGA 9478
Query 349861 TACACATCTTGGTGGAGAAGATTTTGA 349887
|| || | || || ||||||| ||
Sbjct 9477 CACTCACTTGGGAGGTCAAGATTTCGA 9451
>seq5020
Length=13931
Score = 104 bits (114), Expect = 7e-17
Identities = 246/365 (67%), Gaps = 10/365 (3%)
Strand=Plus/Plus
Query 349562 AAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTACT 349621
|| |||||||| | ||| ||||||||| | | | || | || ||| | |||
Sbjct 1581 AAGATGAAGGAGACTGCGGAAGCATATCTCACAAAGCCTGTTCAAAACGCCGTTGTCACT 1640
Query 349622 GTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCG 349681
|| || || || || || || |||| || || || ||||||||||| |||||
Sbjct 1641 GTTCCCGCTTACTTCAACGACTCCCAACGCCAGGCGACCAAAGATGCTGGTCAAATTGCC 1700
Query 349682 GGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTT 349741
|| || || ||||| ||| | | || || || || || || ||| |||||||||| |||
Sbjct 1701 GGTTTGAACGTTCTTAGAGTCGTCAACGAGCCAACCGCAGCTGCACTTGCATATGGCCTT 1760
Query 349742 GATAAA-ATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTT 349800
|| ||| ||||| || ||||| | | || | ||||| ||||| ||||||||
Sbjct 1761 GAGAAAGATGAG-GA-CAAGATCATCGCAGTC-----TACGATTTGGGTGGAGGTACTTT 1813
Query 349801 TGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGA 349860
|||| | || | || || | |||| | || ||||| ||| | || |||||
Sbjct 1814 TGATATCTCTGTTCTCGAGATTCAGAAGGGTGTCTTCGAAGTCAAATCTACCAACGGTGA 1873
Query 349861 TACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCG-CATTTTGTTAAAGAAT 349919
|||||| | || || |||||||| ||| ||| || | |||| || || ||| || |||
Sbjct 1874 TACACACTTGGGAGGTGAAGATTTCGAT-ATCCACTTGGTTCGCCACTTGGTTCAACAAT 1932
Query 349920 TTAAG 349924
| |||
Sbjct 1933 TCAAG 1937
>seq2353
Length=2042
Score = 93.3 bits (102), Expect = 1e-13
Identities = 217/327 (66%), Gaps = 3/327 (1%)
Strand=Plus/Plus
Query 349562 AAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTACT 349621
|||||||||||| | || ||| |||| ||||| | | || || | || ||| |||||
Sbjct 251 AAAATGAAGGAAGTCGCCGAATCATACTTAGGAAAGAAGGTCACCCACGCAGTTGTTACT 310
Query 349622 GTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCG 349681
|| ||||| || || || ||| ||| | ||||| || || || || ||| ||
Sbjct 311 GTTCCAGCATACTTCAACGATAACCAAAGACAAGCAACCAAGGACGCCGGTGTCATCGCT 370
Query 349682 GGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTT 349741
|| || | ||||| | || |||| ||||| || || ||||| ||||| || || |
Sbjct 371 GGTTTGGAAGTTCTCCGTATCGTTAACGAACCTACCGCCGCAGCTATTGCCTACGGTTTG 430
Query 349742 GATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTT 349801
||||| || ||| |||| | ||| | | | ||| | ||||| || |||||
Sbjct 431 GATAA---GACTGATGGAGAACGTCAAATTATCGTCTACGATCTCGGTGGAGGAACTTTC 487
Query 349802 GATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGAT 349861
||||| || || || | | || || |||| || ||| | || || |||||
Sbjct 488 GATGTTTCCCTTCTTTCTATCGACCGTGGTGTTTTCGAGGTTCTTTCTACCGCCGGTGAC 547
Query 349862 ACACATCTTGGTGGAGAAGATTTTGAT 349888
|| || | || ||||||||||| |||
Sbjct 548 ACTCACTTGGGAGGAGAAGATTTCGAT 574
>seq4887
Length=16554
Score = 84.2 bits (92), Expect = 7e-11
Identities = 91/121 (75%), Gaps = 0/121 (0%)
Strand=Plus/Minus
Query 202739 ATGGTTCAAAACATTCATTATTACCTAAAATTTGACTGGTACTAGCAGTTGGCATAGGTG 202798
|||| || |||||||| || ||| | ||||||| ||||| |||||||||||||| |
Sbjct 11609 ATGGCTCGAAACATTCGTTGAAACCGAGAATTTGAGATGTACTGGCAGTTGGCATAGGAG 11550
Query 202799 CAACTAGTAAACTATTGCGAAGCCCATATTCTTTAATACTATGTTTAAGAGTATTCCAAT 202858
|||| || ||||| ||||||| |||| || || ||| || || || ||| |||||
Sbjct 11549 CAACAAGCAAACTGTTGCGAATACCATGTTGCTTGATAGATTGCTTGAGGCTATCCCAAT 11490
Query 202859 C 202859
|
Sbjct 11489 C 11489
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1515111802723035
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |