Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20echinophila_20[genbank_20GCA_5F000812885.1_202014-12- 31] 7,345 sequences; 40,250,382 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq4887 158 1e-33 seq4745 132 5e-26 >seq4887 Length=16554 Score = 158 bits (174), Expect = 1e-33 Identities = 710/1109 (64%), Gaps = 36/1109 (3%) Strand=Plus/Minus Query 78507 GAACTCGCCGGCCAGGGTCCGGCGCAGGTAGATGTTGGTCGTGTACGGCTCGAAAGCCTC 78566 |||||| |||||||| || || |||||||||| ||||| ||||||||| || Sbjct 11653 GAACTCTCCGGCCAGCACACGACGGGAATAGATGTTGGAAGTGTATGGCTCGAAACATTC 11594 Query 78567 GTTGTTCCCCATGATCTGGGCGGTCGAGGCGGTCGGCATGGGTGCGACCAGTAGAGAATT 78626 |||| || | || || | || ||| || ||||| || || || || | | || Sbjct 11593 GTTGAAACCGAGAATTTGAGATGTACTGGCAGTTGGCATAGGAGCAACAAGCAAACTGTT 11534 Query 78627 CCGAAGACCATGCGTCTTGATCTCGACCTTTAGGCCGTCCCAA------AATTCATTCGC 78680 |||| |||||| |||||| ||| |||| |||||| | || | | Sbjct 11533 GCGAATACCATGTTGCTTGATAGATTGCTTGAGGCTATCCCAATCCCAGAGATCTGTAGG 11474 Query 78681 CGCGATCCCCCACATGTCCGGTTGAAGGATACCCTCGGACGCCGGCGACCCCTTGAACGT 78740 | | |||||||| || |||||| ||||| ||| | || || || | | | || Sbjct 11473 AGTAACACCCCACATATCATATTGAAGTTCACCCTTGGAAACTGGAGAACCTTCGTAGGT 11414 Query 78741 CTCGTAAGATCCCTCCTCCTTGGCGAGTTCGCATGACTCGAG--CAGGGCCGCGTGGTAC 78798 ||| || | ||| ||||||||| | || | | ||| || ||| ||||||| Sbjct 11413 CTCATATGGGCCCAACTCCTTGGCAA--TCTGAACAGACGAAGTCAAGGCACCGTGGTAG 11356 Query 78799 ACAGCCTCGAAGATGCCCTTGTTGAGCTCGCGCGCCTTGGTCTCGTCGAACG--AAAGGC 78856 | | |||||| || |||| || | |||| | ||||| | ||| | Sbjct 11355 ATGGTCTCGAAAATCTGGATGTTAAGATGTTTGGCCTCAGGTGAATCGAATGGCAAACGG 11296 Query 78857 CGAGCATCATGAAGACATCGGCCAGGCCCTGGACGCCGATAGCGATCGGTCGGTGGCGCA 78916 |||| || |||| |||| || || ||||| || || | ||| || |||||||| || | Sbjct 11295 AGAGC--CAGGAAGGCATCAGCAAGACCCTGAACACCAACAGCAATAGGTCGGTGACGGA 11238 Query 78917 TGTTGCTCTTTCGGGCCGCCTCGGTCGGG-TAAAAGTTCCGATCGATGACGCGGTTCAGG 78975 ||| ||||||| || | | || | || || |||| || || | ||||| | Sbjct 11237 AGTTACTCTTTCTAGCTTC-TGGGACAGGATAGTAGTTGATGTCAATAATCTTGTTCAAG 11179 Query 78976 TTACGCGTGACGACCCGAGTCACCTCGTACAATTTGGCGAAATCAAAATGATTTCCT--- 79032 || | || || || ||||| | | || ||||||| || || ||| Sbjct 11178 TTTCTGACAACAACTTGAACGACCTCATGAAGCTTTTGGAAATCATAAG--TTCCCTCAG 11121 Query 79033 -----TTGATGAAAGTCGGTAG-GCACAGCGATGCCAGGTTGCACACGGCCGTCTCGTCC 79086 |||| || || || || ||| | || |||| ||| || || ||| ||| Sbjct 11120 CCATGTTGACAAAGGTTGGGAGAGCA-ATAGAAGCCAAGTTACAGCAAGCAACCTCATCC 11062 Query 79087 GGGCTAGAAACCTCGATGATTTCTGTGCACAAATTAGA-CGACTTGATGGTGCCGATGTT 79145 || ||| |||| ||||||||||||||| || || | || ||| ||||||| ||| Sbjct 11061 GGTGCAGAGTATTCGACGATTTCTGTGCACAAGTTGGAGCTACG-GATTGTGCCGAGGTT 11003 Query 79146 CTTCTGGTTGCTCTTCTCGTTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTC 79205 ||| ||||| ||||| | ||| || || || ||||| |||| | || | || ||||| Sbjct 11002 CTTTTGGTTACTCTTTTTGTTGCAAGCATCTTTGTAAAGCATGAAAGGGTTTCCAGTCTC 10943 Query 79206 AACCTGACTCTTGAGAACGCCGTCCCAGATGTCCCGGGCCCGGACAACCTTCTTGTACCG 79265 | ||| || || | | | ||| | | | ||| || ||| ||| Sbjct 10942 AGTCTGGGCCTCAAGGATGGAATACCAAAGCTTTTGAGCCTTGATGGTCTTACG--ACCT 10885 Query 79266 --ACCCTGTGCGACGTA-CGTCCGGTACAACTCGTTGAAAGCCTCCCCATAGACATCGGG 79322 ||| ||| |||| | | | || | | | ||| | || ||||||||||| | Sbjct 10884 TTACCTTGTCTCTCGTAACCTTCA-TAGAGAGCCTCGAATTCATCACCATAGACATCAGC 10826 Query 79323 CAGGCCCGGGCACTCGTGCGGGCACATCAGGTGCCAGTCCTCGTCCTTCTCAACCTTCTC 79382 || ||| || || |||| |||||||| || |||||| ||| ||| ||||| || Sbjct 10825 CAAGCCTGGACATTCGTTAGGGCACATGAGTGTCCAGTCTCCGTTCTTTTCAACACGCTT 10766 Query 79383 CATGAAGAGGTCCGGGATCCACAGGGCCGTGAAGAGGTCGCGGCAACGCATCTCCTCGTC 79442 ||||||||| || || ||||| ||||| |||||| ||||| | | ||||| | Sbjct 10765 CATGAAGAGATCTGGAATCCAGAGGGCATAGAAGAGATCGCGTGCTCTAACTTCCTCTTT 10706 Query 79443 GCCCTGGTTCAGACGCAGCTCGAGAAAGTCCATGATGTCGGCGTGCCACGGCTCCAGATA 79502 ||| |||||| || || || | || || | || || || ||||| || || || || Sbjct 10705 GCCGTGGTTCTTTCGGAGGTCCAAGAACTCAAAGACATCCGCATGCCATGGTTCAAGGTA 10646 Query 79503 GATGGCGAACGAACCCTTGCGCTTGCCGCCGCCCTGGTTGACGTACCGGGCCGTGTTGTT 79562 | ||| || | ||| ||||||| || || |||| ||| || | || |||||||| Sbjct 10645 AACGGCAAATGCACCAGGGCGCTTGTTACCACCTTGGTCGACATATCTAGCGGTGTTGTT 10586 Query 79563 GAAAACTCGGAGCATGGGCACGATGCCGT 79591 ||||||||| ||||| || ||||| |||| Sbjct 10585 GAAAACTCGAAGCATAGGAACGATACCGT 10557 Score = 143 bits (158), Expect = 3e-29 Identities = 352/534 (66%), Gaps = 0/534 (0%) Strand=Plus/Plus Query 19165 CGAGACATACGACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCTTTTCAA 19224 ||| |||||| || ||||| | | || | ||| || ||||| | || || || ||| Sbjct 10309 CGAAACATACAACTTGATGTCCAACAAATACTTTACACACGCTTCTCCAACACTCTTCTC 10368 Query 19225 CGCCGGTACGAACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGACAG 19284 || ||||| | | ||| | || || ||||| | | ||||||||| || || Sbjct 10369 TGCGGGTACTCCACAGGCTCAGCTTTCATCATGCTTCCTTATTGATATGAAGGAGGATAG 10428 Query 19285 CATTGAGGGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGGGG 19344 ||||| || ||||| || || | ||| || || || || ||| | || || Sbjct 10429 TATTGATGGTATCTATGATACTTTGAAGATTTGTGCTATGATTTCAAAGAACGCTGGTGG 10488 Query 19345 TATCGGGATCCACTGCTCGAATATCCGGTCGAGTGGTACACGAATCAATGGGACGAACGG 19404 ||| || || || | | ||||| | | |||| | || || || ||||| Sbjct 10489 TATTGGTCTCAACATCCACAGAATCCGTGCTACTGGTGCCTACATTGCAGGCACAAACGG 10548 Query 19405 AGTAGCCGACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACGTCAA 19464 | |||||||||| || ||||| || || ||||||||||| || || || ||| | Sbjct 10549 TAACTCTAACGGTATCGTTCCTATGCTTCGAGTTTTCAACAACACCGCTAGATATGTCGA 10608 Query 19465 CCAGGGGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACGCGGA 19524 ||| || || ||| ||| || | || ||| | ||||| || |||||||| ||||| Sbjct 10609 CCAAGGTGGTAACAAGCGCCCTGGTGCATTTGCCGTTTACCTTGAACCATGGCATGCGGA 10668 Query 19525 CGTCATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGTCGCGA 19584 ||| | || ||| | || || || |||||| || | ||||| | | ||||| Sbjct 10669 TGTCTTTGAGTTCTTGGACCTCCGAAAGAACCACGGCAAAGAGGAAGTTAGAGCACGCGA 10728 Query 19585 CCTCTTCACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAGGACGAAGA 19644 |||||| ||| | |||||||| || || |||||| || ||||| ||| ||| ||| Sbjct 10729 TCTCTTCTATGCCCTCTGGATTCCAGATCTCTTCATGAAGCGTGTTGAAAAGAACGGAGA 10788 Query 19645 ATGGCACCTGATGTGCCCGCACGAATGCCCTGGCCTACCCGACGTCTACGGCGA 19698 ||| || |||||||| ||||||| || ||| | | || ||||| || || Sbjct 10789 CTGGACACTCATGTGCCCTAACGAATGTCCAGGCTTGGCTGATGTCTATGGTGA 10842 >seq4745 Length=15183 Score = 132 bits (146), Expect = 5e-26 Identities = 310/457 (68%), Gaps = 22/457 (5%) Strand=Plus/Minus Query 59973 TTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTC 60032 ||||| ||||||||| | || || || ||| ||||| ||||||||| ||| || ||| Sbjct 9142 TTTGCTCAACGTCTCGTCGCATTCGCTGCCGTTGAAGGTATCTTCTTCAGTGGTTCCTTC 9083 Query 60033 TGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAG 60092 |||||||||||||||| ||||||||| | ||| | || || | || ||||||||| Sbjct 9082 GCCTCTATTTTCTGGCTCAAGAAGCGTGGCTTGATGGCTGGTCTCACCTTTTCCAACGAG 9023 Query 60093 CTGATTTCCCGGGACGAGGGCCTCCATCAGGAGTTTGCAGTGAC-GCTCTATTCACACCT 60151 || || ||||| |||||||| || ||| || || || || | ||||| || ||| Sbjct 9022 CTCATCTCCCGTGACGAGGGTCTTCATACCGACTTCGC-CTGCCTGCTCTTCTCGCAC-- 8966 Query 60152 ATTGGAAAAATGCCCTTCCA---AGGATATTCACAAGATTGTT-CAGTGGGCTTGTGAAG 60207 ||| | | |||| || | | |||| | || || ||| || ||| || Sbjct 8965 -TTGAAGCATCGCCCAAGCAAACAAGCCGTTCAGGATGTTATTACAGAGG--CTGTCCAG 8909 Query 60208 -TGGAGAGCGAGTTCATCACAGAAGCGCTTCCATGCAAACTCATAGGTATGGACGCTGGA 60266 | ||| || ||| | || ||||| |||||||| ||| | || ||| || | | Sbjct 8908 ATTGAGCAAGAATTCTTGACGGAAGCTCTTCCATGTGCTCTCCTTGGCATGAACTCGGAT 8849 Query 60267 GAAATGACGCAGTACATTCAGTTTGTCGCGGACCG-CCTCATG--GCCC--AGTTTGGAG 60321 |||| ||| |||||| |||| ||||| ||||| | || || || | || ||| Sbjct 8848 TTGATGAAGCAATACATTGAGTTCGTCGCAGACCGTCTTCTTGTTGCTCTTGGTAATGAG 8789 Query 60322 AAGGACCAATTTACGGCGTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAG 60381 |||| ||||| | || || ||||||| ||||| | ||| || | | || Sbjct 8788 AAGG-----TTTACCGATCAGCCAATCCATTCGACTTCATGGAAAACATTTCTCTCGCAG 8734 Query 60382 GGAAGACCAACTTCTTTGAGAAGCGGGTCGGGGATTA 60418 | |||||||||||||| |||||||| || || || || Sbjct 8733 GCAAGACCAACTTCTTCGAGAAGCGAGTTGGCGACTA 8697 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548474438566800