Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rutstroemia_20echinophila_20[genbank_20GCA_5F000812885.1_202014-12-
31] 7,345 sequences; 40,250,382 total letters
Query= NC_028108.1
Length=171454
Score E
Sequences producing significant alignments: (Bits) Value
seq4887 158 1e-33
seq4745 132 5e-26
>seq4887
Length=16554
Score = 158 bits (174), Expect = 1e-33
Identities = 710/1109 (64%), Gaps = 36/1109 (3%)
Strand=Plus/Minus
Query 78507 GAACTCGCCGGCCAGGGTCCGGCGCAGGTAGATGTTGGTCGTGTACGGCTCGAAAGCCTC 78566
|||||| |||||||| || || |||||||||| ||||| ||||||||| ||
Sbjct 11653 GAACTCTCCGGCCAGCACACGACGGGAATAGATGTTGGAAGTGTATGGCTCGAAACATTC 11594
Query 78567 GTTGTTCCCCATGATCTGGGCGGTCGAGGCGGTCGGCATGGGTGCGACCAGTAGAGAATT 78626
|||| || | || || | || ||| || ||||| || || || || | | ||
Sbjct 11593 GTTGAAACCGAGAATTTGAGATGTACTGGCAGTTGGCATAGGAGCAACAAGCAAACTGTT 11534
Query 78627 CCGAAGACCATGCGTCTTGATCTCGACCTTTAGGCCGTCCCAA------AATTCATTCGC 78680
|||| |||||| |||||| ||| |||| |||||| | || | |
Sbjct 11533 GCGAATACCATGTTGCTTGATAGATTGCTTGAGGCTATCCCAATCCCAGAGATCTGTAGG 11474
Query 78681 CGCGATCCCCCACATGTCCGGTTGAAGGATACCCTCGGACGCCGGCGACCCCTTGAACGT 78740
| | |||||||| || |||||| ||||| ||| | || || || | | | ||
Sbjct 11473 AGTAACACCCCACATATCATATTGAAGTTCACCCTTGGAAACTGGAGAACCTTCGTAGGT 11414
Query 78741 CTCGTAAGATCCCTCCTCCTTGGCGAGTTCGCATGACTCGAG--CAGGGCCGCGTGGTAC 78798
||| || | ||| ||||||||| | || | | ||| || ||| |||||||
Sbjct 11413 CTCATATGGGCCCAACTCCTTGGCAA--TCTGAACAGACGAAGTCAAGGCACCGTGGTAG 11356
Query 78799 ACAGCCTCGAAGATGCCCTTGTTGAGCTCGCGCGCCTTGGTCTCGTCGAACG--AAAGGC 78856
| | |||||| || |||| || | |||| | ||||| | ||| |
Sbjct 11355 ATGGTCTCGAAAATCTGGATGTTAAGATGTTTGGCCTCAGGTGAATCGAATGGCAAACGG 11296
Query 78857 CGAGCATCATGAAGACATCGGCCAGGCCCTGGACGCCGATAGCGATCGGTCGGTGGCGCA 78916
|||| || |||| |||| || || ||||| || || | ||| || |||||||| || |
Sbjct 11295 AGAGC--CAGGAAGGCATCAGCAAGACCCTGAACACCAACAGCAATAGGTCGGTGACGGA 11238
Query 78917 TGTTGCTCTTTCGGGCCGCCTCGGTCGGG-TAAAAGTTCCGATCGATGACGCGGTTCAGG 78975
||| ||||||| || | | || | || || |||| || || | ||||| |
Sbjct 11237 AGTTACTCTTTCTAGCTTC-TGGGACAGGATAGTAGTTGATGTCAATAATCTTGTTCAAG 11179
Query 78976 TTACGCGTGACGACCCGAGTCACCTCGTACAATTTGGCGAAATCAAAATGATTTCCT--- 79032
|| | || || || ||||| | | || ||||||| || || |||
Sbjct 11178 TTTCTGACAACAACTTGAACGACCTCATGAAGCTTTTGGAAATCATAAG--TTCCCTCAG 11121
Query 79033 -----TTGATGAAAGTCGGTAG-GCACAGCGATGCCAGGTTGCACACGGCCGTCTCGTCC 79086
|||| || || || || ||| | || |||| ||| || || ||| |||
Sbjct 11120 CCATGTTGACAAAGGTTGGGAGAGCA-ATAGAAGCCAAGTTACAGCAAGCAACCTCATCC 11062
Query 79087 GGGCTAGAAACCTCGATGATTTCTGTGCACAAATTAGA-CGACTTGATGGTGCCGATGTT 79145
|| ||| |||| ||||||||||||||| || || | || ||| ||||||| |||
Sbjct 11061 GGTGCAGAGTATTCGACGATTTCTGTGCACAAGTTGGAGCTACG-GATTGTGCCGAGGTT 11003
Query 79146 CTTCTGGTTGCTCTTCTCGTTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTC 79205
||| ||||| ||||| | ||| || || || ||||| |||| | || | || |||||
Sbjct 11002 CTTTTGGTTACTCTTTTTGTTGCAAGCATCTTTGTAAAGCATGAAAGGGTTTCCAGTCTC 10943
Query 79206 AACCTGACTCTTGAGAACGCCGTCCCAGATGTCCCGGGCCCGGACAACCTTCTTGTACCG 79265
| ||| || || | | | ||| | | | ||| || ||| |||
Sbjct 10942 AGTCTGGGCCTCAAGGATGGAATACCAAAGCTTTTGAGCCTTGATGGTCTTACG--ACCT 10885
Query 79266 --ACCCTGTGCGACGTA-CGTCCGGTACAACTCGTTGAAAGCCTCCCCATAGACATCGGG 79322
||| ||| |||| | | | || | | | ||| | || ||||||||||| |
Sbjct 10884 TTACCTTGTCTCTCGTAACCTTCA-TAGAGAGCCTCGAATTCATCACCATAGACATCAGC 10826
Query 79323 CAGGCCCGGGCACTCGTGCGGGCACATCAGGTGCCAGTCCTCGTCCTTCTCAACCTTCTC 79382
|| ||| || || |||| |||||||| || |||||| ||| ||| ||||| ||
Sbjct 10825 CAAGCCTGGACATTCGTTAGGGCACATGAGTGTCCAGTCTCCGTTCTTTTCAACACGCTT 10766
Query 79383 CATGAAGAGGTCCGGGATCCACAGGGCCGTGAAGAGGTCGCGGCAACGCATCTCCTCGTC 79442
||||||||| || || ||||| ||||| |||||| ||||| | | ||||| |
Sbjct 10765 CATGAAGAGATCTGGAATCCAGAGGGCATAGAAGAGATCGCGTGCTCTAACTTCCTCTTT 10706
Query 79443 GCCCTGGTTCAGACGCAGCTCGAGAAAGTCCATGATGTCGGCGTGCCACGGCTCCAGATA 79502
||| |||||| || || || | || || | || || || ||||| || || || ||
Sbjct 10705 GCCGTGGTTCTTTCGGAGGTCCAAGAACTCAAAGACATCCGCATGCCATGGTTCAAGGTA 10646
Query 79503 GATGGCGAACGAACCCTTGCGCTTGCCGCCGCCCTGGTTGACGTACCGGGCCGTGTTGTT 79562
| ||| || | ||| ||||||| || || |||| ||| || | || ||||||||
Sbjct 10645 AACGGCAAATGCACCAGGGCGCTTGTTACCACCTTGGTCGACATATCTAGCGGTGTTGTT 10586
Query 79563 GAAAACTCGGAGCATGGGCACGATGCCGT 79591
||||||||| ||||| || ||||| ||||
Sbjct 10585 GAAAACTCGAAGCATAGGAACGATACCGT 10557
Score = 143 bits (158), Expect = 3e-29
Identities = 352/534 (66%), Gaps = 0/534 (0%)
Strand=Plus/Plus
Query 19165 CGAGACATACGACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCTTTTCAA 19224
||| |||||| || ||||| | | || | ||| || ||||| | || || || |||
Sbjct 10309 CGAAACATACAACTTGATGTCCAACAAATACTTTACACACGCTTCTCCAACACTCTTCTC 10368
Query 19225 CGCCGGTACGAACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGACAG 19284
|| ||||| | | ||| | || || ||||| | | ||||||||| || ||
Sbjct 10369 TGCGGGTACTCCACAGGCTCAGCTTTCATCATGCTTCCTTATTGATATGAAGGAGGATAG 10428
Query 19285 CATTGAGGGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGGGG 19344
||||| || ||||| || || | ||| || || || || ||| | || ||
Sbjct 10429 TATTGATGGTATCTATGATACTTTGAAGATTTGTGCTATGATTTCAAAGAACGCTGGTGG 10488
Query 19345 TATCGGGATCCACTGCTCGAATATCCGGTCGAGTGGTACACGAATCAATGGGACGAACGG 19404
||| || || || | | ||||| | | |||| | || || || |||||
Sbjct 10489 TATTGGTCTCAACATCCACAGAATCCGTGCTACTGGTGCCTACATTGCAGGCACAAACGG 10548
Query 19405 AGTAGCCGACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACGTCAA 19464
| |||||||||| || ||||| || || ||||||||||| || || || ||| |
Sbjct 10549 TAACTCTAACGGTATCGTTCCTATGCTTCGAGTTTTCAACAACACCGCTAGATATGTCGA 10608
Query 19465 CCAGGGGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACGCGGA 19524
||| || || ||| ||| || | || ||| | ||||| || |||||||| |||||
Sbjct 10609 CCAAGGTGGTAACAAGCGCCCTGGTGCATTTGCCGTTTACCTTGAACCATGGCATGCGGA 10668
Query 19525 CGTCATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGTCGCGA 19584
||| | || ||| | || || || |||||| || | ||||| | | |||||
Sbjct 10669 TGTCTTTGAGTTCTTGGACCTCCGAAAGAACCACGGCAAAGAGGAAGTTAGAGCACGCGA 10728
Query 19585 CCTCTTCACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAGGACGAAGA 19644
|||||| ||| | |||||||| || || |||||| || ||||| ||| ||| |||
Sbjct 10729 TCTCTTCTATGCCCTCTGGATTCCAGATCTCTTCATGAAGCGTGTTGAAAAGAACGGAGA 10788
Query 19645 ATGGCACCTGATGTGCCCGCACGAATGCCCTGGCCTACCCGACGTCTACGGCGA 19698
||| || |||||||| ||||||| || ||| | | || ||||| || ||
Sbjct 10789 CTGGACACTCATGTGCCCTAACGAATGTCCAGGCTTGGCTGATGTCTATGGTGA 10842
>seq4745
Length=15183
Score = 132 bits (146), Expect = 5e-26
Identities = 310/457 (68%), Gaps = 22/457 (5%)
Strand=Plus/Minus
Query 59973 TTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTC 60032
||||| ||||||||| | || || || ||| ||||| ||||||||| ||| || |||
Sbjct 9142 TTTGCTCAACGTCTCGTCGCATTCGCTGCCGTTGAAGGTATCTTCTTCAGTGGTTCCTTC 9083
Query 60033 TGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAG 60092
|||||||||||||||| ||||||||| | ||| | || || | || |||||||||
Sbjct 9082 GCCTCTATTTTCTGGCTCAAGAAGCGTGGCTTGATGGCTGGTCTCACCTTTTCCAACGAG 9023
Query 60093 CTGATTTCCCGGGACGAGGGCCTCCATCAGGAGTTTGCAGTGAC-GCTCTATTCACACCT 60151
|| || ||||| |||||||| || ||| || || || || | ||||| || |||
Sbjct 9022 CTCATCTCCCGTGACGAGGGTCTTCATACCGACTTCGC-CTGCCTGCTCTTCTCGCAC-- 8966
Query 60152 ATTGGAAAAATGCCCTTCCA---AGGATATTCACAAGATTGTT-CAGTGGGCTTGTGAAG 60207
||| | | |||| || | | |||| | || || ||| || ||| ||
Sbjct 8965 -TTGAAGCATCGCCCAAGCAAACAAGCCGTTCAGGATGTTATTACAGAGG--CTGTCCAG 8909
Query 60208 -TGGAGAGCGAGTTCATCACAGAAGCGCTTCCATGCAAACTCATAGGTATGGACGCTGGA 60266
| ||| || ||| | || ||||| |||||||| ||| | || ||| || | |
Sbjct 8908 ATTGAGCAAGAATTCTTGACGGAAGCTCTTCCATGTGCTCTCCTTGGCATGAACTCGGAT 8849
Query 60267 GAAATGACGCAGTACATTCAGTTTGTCGCGGACCG-CCTCATG--GCCC--AGTTTGGAG 60321
|||| ||| |||||| |||| ||||| ||||| | || || || | || |||
Sbjct 8848 TTGATGAAGCAATACATTGAGTTCGTCGCAGACCGTCTTCTTGTTGCTCTTGGTAATGAG 8789
Query 60322 AAGGACCAATTTACGGCGTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAG 60381
|||| ||||| | || || ||||||| ||||| | ||| || | | ||
Sbjct 8788 AAGG-----TTTACCGATCAGCCAATCCATTCGACTTCATGGAAAACATTTCTCTCGCAG 8734
Query 60382 GGAAGACCAACTTCTTTGAGAAGCGGGTCGGGGATTA 60418
| |||||||||||||| |||||||| || || || ||
Sbjct 8733 GCAAGACCAACTTCTTCGAGAAGCGAGTTGGCGACTA 8697
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 548474438566800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |