Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20echinophila_20[genbank_20GCA_5F000812885.1_202014-12- 31] 7,345 sequences; 40,250,382 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq4887 129 6e-25 >seq4887 Length=16554 Score = 129 bits (142), Expect = 6e-25 Identities = 489/759 (64%), Gaps = 14/759 (2%) Strand=Plus/Plus Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACG 53252 ||||||| || ||| | ||||| |||||||| || ||| | || || ||| Sbjct 10260 TCATGCGTGTTGCCGTTGGTATTCACGGTGATGATATTGAAAGTGCCATCGAAACATACA 10319 Query 53253 ACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGA 53312 |||| ||| | | || |||||||| ||||| | ||||| || ||| || ||||| Sbjct 10320 ACTTGATGTCCAACAAATACTTTACACACGCTTCTCCAACACTCTTCTCTGCGGGTACTC 10379 Query 53313 ATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCA 53372 || ||||| | || |||||||| | | |||||||| || || || || | Sbjct 10380 CACAGGCTCAGCTTTCATCATGCTTCCTTATTGATATGAAGGAGGATAGTATTGATGGTA 10439 Query 53373 TCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCC 53432 |||| || || | ||| ||||| || || ||| | |||||||| ||| || Sbjct 10440 TCTATGATACTTTGAAGATTTGTGCTATGATTTCAAAGAACGCTGGTGGTATTGGTCTCA 10499 Query 53433 AC-TGCTC-GAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGA 53490 || | | | ||| ||||||| | || | || || || ||||| | | | Sbjct 10500 ACATCCACAGAA--TCCGTGCTACTGGTGCCTACATTGCAGGCACAAACGGTAACTCTAA 10557 Query 53491 TGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGG 53550 || ||||| |||||||| || || ||||||||||| || | || ||| |||| ||||| Sbjct 10558 CGGTATCGTTCCTATGCTTCGAGTTTTCAACAACACCGCTAGATATGTCGACCAAGGTGG 10617 Query 53551 TGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGA 53610 | |||||| || | || ||| | ||||| || || ||||| || || | | || Sbjct 10618 TAACAAGCGCCCTGGTGCATTTGCCGTTTACCTTGAACCATGGCATGCGGATGTCTTTGA 10677 Query 53611 GTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTAC 53670 ||| | || || || ||| || || | || || | | || || || || Sbjct 10678 GTTCTTGGACCTCCGAAAGAACCACGGCAAAGAGGAAGTTAGAGCACGCGATCTCTTCTA 10737 Query 53671 AGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCT 53730 || || |||||||| || ||||||||| | || || ||| ||| || ||| || Sbjct 10738 TGCCCTCTGGATTCCAGATCTCTTCATGAAGCGTGTTGAAAAGAACGGAGACTGGACACT 10797 Query 53731 GATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTTAACGAGAT 53790 |||||||| ||||| || || ||| | | |||||| ||||| || || | | | Sbjct 10798 CATGTGCCCTAACGAATGTCCAGGCTTGGCTGATGTCTATGGTGATGAATTCGAGGCTCT 10857 Query 53791 GTATCGGACG-TACGCAGTTCAGGGCCGCTACAAG----AAGAAGGTCAAGGCGCGTGAG 53845 ||| | | | |||| || || | || | | |||| ||||||| | || Sbjct 10858 CTAT-GAAGGTTACG-AG---AGACAAGGTAAAGGTCGTAAGACCATCAAGGCTCAAAAG 10912 Query 53846 GTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAG 53905 | ||| || | ||||| || |||| ||||| |||| || | |||| ||||| Sbjct 10913 CTTTGGTATTCCATCCTTGAGGCCCAGACTGAGACTGGAAACCCTTTCATGCTTTACAAA 10972 Query 53906 GATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGGC 53944 ||| | |||| | ||||| ||||| |||||| ||||| Sbjct 10973 GATGCTTGCAACAAAAAGAGTAACCAAAAGAACCTCGGC 11011 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547165758731000