Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rutstroemia_20echinophila_20[genbank_20GCA_5F000812885.1_202014-12-
31] 7,345 sequences; 40,250,382 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq4887 129 6e-25
>seq4887
Length=16554
Score = 129 bits (142), Expect = 6e-25
Identities = 489/759 (64%), Gaps = 14/759 (2%)
Strand=Plus/Plus
Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACG 53252
||||||| || ||| | ||||| |||||||| || ||| | || || |||
Sbjct 10260 TCATGCGTGTTGCCGTTGGTATTCACGGTGATGATATTGAAAGTGCCATCGAAACATACA 10319
Query 53253 ACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGA 53312
|||| ||| | | || |||||||| ||||| | ||||| || ||| || |||||
Sbjct 10320 ACTTGATGTCCAACAAATACTTTACACACGCTTCTCCAACACTCTTCTCTGCGGGTACTC 10379
Query 53313 ATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCA 53372
|| ||||| | || |||||||| | | |||||||| || || || || |
Sbjct 10380 CACAGGCTCAGCTTTCATCATGCTTCCTTATTGATATGAAGGAGGATAGTATTGATGGTA 10439
Query 53373 TCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCC 53432
|||| || || | ||| ||||| || || ||| | |||||||| ||| ||
Sbjct 10440 TCTATGATACTTTGAAGATTTGTGCTATGATTTCAAAGAACGCTGGTGGTATTGGTCTCA 10499
Query 53433 AC-TGCTC-GAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGA 53490
|| | | | ||| ||||||| | || | || || || ||||| | | |
Sbjct 10500 ACATCCACAGAA--TCCGTGCTACTGGTGCCTACATTGCAGGCACAAACGGTAACTCTAA 10557
Query 53491 TGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGG 53550
|| ||||| |||||||| || || ||||||||||| || | || ||| |||| |||||
Sbjct 10558 CGGTATCGTTCCTATGCTTCGAGTTTTCAACAACACCGCTAGATATGTCGACCAAGGTGG 10617
Query 53551 TGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGA 53610
| |||||| || | || ||| | ||||| || || ||||| || || | | ||
Sbjct 10618 TAACAAGCGCCCTGGTGCATTTGCCGTTTACCTTGAACCATGGCATGCGGATGTCTTTGA 10677
Query 53611 GTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTAC 53670
||| | || || || ||| || || | || || | | || || || ||
Sbjct 10678 GTTCTTGGACCTCCGAAAGAACCACGGCAAAGAGGAAGTTAGAGCACGCGATCTCTTCTA 10737
Query 53671 AGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCT 53730
|| || |||||||| || ||||||||| | || || ||| ||| || ||| ||
Sbjct 10738 TGCCCTCTGGATTCCAGATCTCTTCATGAAGCGTGTTGAAAAGAACGGAGACTGGACACT 10797
Query 53731 GATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTTAACGAGAT 53790
|||||||| ||||| || || ||| | | |||||| ||||| || || | | |
Sbjct 10798 CATGTGCCCTAACGAATGTCCAGGCTTGGCTGATGTCTATGGTGATGAATTCGAGGCTCT 10857
Query 53791 GTATCGGACG-TACGCAGTTCAGGGCCGCTACAAG----AAGAAGGTCAAGGCGCGTGAG 53845
||| | | | |||| || || | || | | |||| ||||||| | ||
Sbjct 10858 CTAT-GAAGGTTACG-AG---AGACAAGGTAAAGGTCGTAAGACCATCAAGGCTCAAAAG 10912
Query 53846 GTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAG 53905
| ||| || | ||||| || |||| ||||| |||| || | |||| |||||
Sbjct 10913 CTTTGGTATTCCATCCTTGAGGCCCAGACTGAGACTGGAAACCCTTTCATGCTTTACAAA 10972
Query 53906 GATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGGC 53944
||| | |||| | ||||| ||||| |||||| |||||
Sbjct 10973 GATGCTTGCAACAAAAAGAGTAACCAAAAGAACCTCGGC 11011
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547165758731000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |