Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rutstroemia_20echinophila_20[genbank_20GCA_5F000812885.1_202014-12-
31] 7,345 sequences; 40,250,382 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq4887 183 3e-41
seq894 158 1e-33
seq5062 125 8e-24
seq5771 116 4e-21
seq4745 104 3e-17
>seq4887
Length=16554
Score = 183 bits (202), Expect = 3e-41
Identities = 522/798 (65%), Gaps = 11/798 (1%)
Strand=Plus/Minus
Query 80950 TCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGAC 81009
||||||||||| |||||||| || || ||||| || ||||| || ||||| |
Sbjct 11049 TCGACGATTTCTGTGCACAAGTTGGAGCTACGGATTGTGCCGAGGTTCTTTTGGTTACTC 10990
Query 81010 TTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTG 81069
|| ||||||||| || ||||| |||| | ||| | || ||||| ||| | ||
Sbjct 10989 TTTTTGTTGCAAGCATCTTTGTAAAGCATGAAAGGGTTTCCAGTCTCAGTCTGGGCCTCA 10930
Query 81070 AGGATGGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACA 81129
||||||| | ||||| || | ||||||| ||| || ||| |||| | |
Sbjct 10929 AGGATGGAATACCAAAGCTTTTGAGCCTTGATGGTCTTACGACCTTTACCTTGTCTCTCG 10870
Query 81130 TA--CTTGGCGTAAGCTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCACT 81187
|| ||| | || | ||||| | |||| | | |||| | | |||| || |
Sbjct 10869 TAACCTT--CATAGAGAGCCTCGAATTCATCACCATAGACATCAGCCAAGCCTGGACATT 10812
Query 81188 CGTTAGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAG 81247
||||||||||||| || |||||| || || || ||| ||||||||| || |
Sbjct 10811 CGTTAGGGCACATGAGTGTCCAGTCTCCGTTCTTTTCAACACGCTTCATGAAGAGATCTG 10752
Query 81248 GGATCCAGAGGGCGGTGAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGTTGAGGC 81307
| ||||||||||| ||| || ||||| | | ||||| | || ||||| |
Sbjct 10751 GAATCCAGAGGGCATAGAAGAGATCGCGTGCTCTAACTTCCTCTTTGCCGTGGTTCTTTC 10692
Query 81308 GCAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGACC 81367
| | || | || || | || |||||||||||||| || || || ||||| | | |
Sbjct 10691 GGAGGTCCAAGAACTCAAAGACATCCGCATGCCATGGTTCAAGGTAAACGGCAAATGCAC 10632
Query 81368 CCTTGCGACGG---CCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACA 81424
| ||| | ||||| |||| ||| || | || || ||| || || || | ||
Sbjct 10631 CAGGGCGCTTGTTACCACCTTGGTCGACATATCTAGCGGTGTTGTTGAAAACTCGAAGCA 10572
Query 81425 TAGGGATGATACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCA 81484
|||| | |||||| | || | |||||| || || | || | || | || || |
Sbjct 10571 TAGGAACGATACCGTTAGAGTTACCGTTTGTGCCTGCAATGTAGGCACCAGTAGCACGGA 10512
Query 81485 CCTTGCTGATTGAAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCA 81544
|| ||| ||||| || ||||| | |||||||||| |||||| ||||
Sbjct 10511 TTCTGTGGATGTTGAGACCAATACCACCAGCGTTCTTTGAAATCATAGCACAAATCTTCA 10452
Query 81545 TGGTCTCATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACA 81604
|| ||||| || || || || ||||| | ||||| |||| | ||| || ||| |
Sbjct 10451 AAGTATCATAGATACCATCAATACTATCCTCCTTCATATCAATAAGGAAGCATGATGAAA 10392
Query 81605 TCTGAGGGCTTTTTGAG--CCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACG 81662
||||| | | | ||| || ||| ||| |||||||| | ||||| | || ||
Sbjct 10391 GCTGAG--CCTGTGGAGTACCCGCAGAGAAGAGTGTTGGAGAAGCGTGTGTAAAGTATTT 10334
Query 81663 GTTTGACATCAGGTCATAGGTTTCCTTGACGCGTGGAATATCGTCACCGTGAATACCGAT 81722
||| ||||||| || || ||||| || | | | |||||| |||||||||||||| |
Sbjct 10333 GTTGGACATCAAGTTGTATGTTTCGATGGCACTTTCAATATCATCACCGTGAATACCAAC 10274
Query 81723 AGCTACACGCATAAACAT 81740
|| |||||||| | |||
Sbjct 10273 GGCAACACGCATGATCAT 10256
Score = 95.1 bits (104), Expect = 1e-14
Identities = 131/182 (72%), Gaps = 6/182 (3%)
Strand=Plus/Minus
Query 80038 GTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGCATAGAA 80097
|| || ||||||||||| || |||||||| || ||||| || | ||||| |||
Sbjct 11973 GTACGGAGATAGTACATTCCAGTCTTGAGACCTAATTTCCATCCAGCAAAATGCATGGAA 11914
Query 80098 CTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGACAGATG 80157
||| ||| | | ||| |||| || |||| |||||||| || ||||| ||| ||||
Sbjct 11913 GTGATCTTGCCCATTGTAGGGTCCTTCATGTGGATGTTCATTGATTGAGATTGATCGATG 11854
Query 80158 AAAGCCCCACGATCTGCCGCCATTTCAATAATTGACTTTTGTGGA---ATTTCCCATACT 80214
||||| ||||| ||||| ||||| | || ||| ||| || || |||||||| ||
Sbjct 11853 AAAGCACCACGGTCTGCGGCCATCTGAACAAT---GTTTCGTTGAGAGATTTCCCAAACA 11797
Query 80215 GT 80216
||
Sbjct 11796 GT 11795
>seq894
Length=6424
Score = 158 bits (174), Expect = 1e-33
Identities = 159/204 (78%), Gaps = 2/204 (1%)
Strand=Plus/Minus
Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489
||||||||||| || || ||||||||||| || || | || | || | ||| ||
Sbjct 4153 ACCGGCAAGACCATCACCCTTGAGGTTGAATCTTCCGACACTATCGACAACGTCAAGACT 4094
Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549
|| || ||||| |||||||| |||||||| ||||| |||||| | || |||||||| |||
Sbjct 4093 AAGATCCAGGATAAGGAGGGTATTCCTCCTGACCAACAGCGTTTGATCTTTGCTGGCAAG 4034
Query 27550 CAACTCGAGGATGATCGTACCCT-AGCAGACTATAATGTCCAAAAGGAATCCACTCTTCA 27608
||||||||||||| |||||| | ||| ||||| || |||| ||||| || ||||| ||
Sbjct 4033 CAACTCGAGGATGGTCGTACTTTGAGC-GACTACAACATCCAGAAGGAGTCTACTCTCCA 3975
Query 27609 TCTAGTCTTGCGTCTTCGCGGTGG 27632
||| ||| | |||||||| || ||
Sbjct 3974 TCTCGTCCTCCGTCTTCGTGGCGG 3951
Score = 154 bits (170), Expect = 2e-32
Identities = 171/228 (75%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| || || |||||||| |||||||| ||||| || ||| | |||||||||||| |
Sbjct 3665 ATGCAGATTTTCGTCAAGACTCTTACCGGAAAGACAATCACTTTGGAGGTTGAGTCATCT 3606
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| || | || | ||| || ||||| |||||||| || ||||| || || ||
Sbjct 3605 GATACTATCGACAACGTAAAGAGCAAGATTCAAGACAAGGAAGGCATTCCACCTGATCAA 3546
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|| ||||| || || ||||||||||| | ||||||| |||||||| | ||||| ||
Sbjct 3545 CAACGTCTCATCTTCGCTGGTAAGCAGTTGGAGGATGGCCGTACCCTGTCGGACTACAAC 3486
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633
| |||||||| || ||| | ||| | || | || ||||| ||||||
Sbjct 3485 ATTCAAAAGGAGTCGACTTTACATTTGGTTCTTCGCCTTCGTGGTGGA 3438
Score = 140 bits (154), Expect = 4e-28
Identities = 160/215 (74%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 27418 GTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCA 27477
|||||||| || |||||||||||||| |||||||||||||| || |||| || |
Sbjct 3881 GTCAAGACTCTCACCGGCAAGACTATCACTCTTGAGGTTGAATCTTCGGATACTATCGAC 3822
Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537
||| | ||| | || ||||| || |||||||| || || || || || || ||| | ||
Sbjct 3821 AATGTTAAGACCAAGATTCAAGATAAGGAGGGTATCCCCCCTGATCAACAACGTTTGATC 3762
Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAA 27597
|| ||||| |||||||| ||||| | || || || | ||||| || |||| ||||||
Sbjct 3761 TTCGCTGGCAAGCAACTTGAGGACGGCCGCACTCTTTCCGACTACAACATCCAGAAGGAA 3702
Query 27598 TCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|| ||| | ||| | || || | ||||| |||||
Sbjct 3701 TCGACTTTACATTTGGTTCTGAGACTTCGTGGTGG 3667
Score = 116 bits (128), Expect = 4e-21
Identities = 165/232 (71%), Gaps = 0/232 (0%)
Strand=Plus/Minus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
||||||||||||||| ||||| | || || ||||| ||||| | ||||| || ||
Sbjct 3438 AATGCAAATCTTTGTTAAGACTTTGACTGGAAAGACAATTACGTTAGAGGTGGAATCGTC 3379
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
|||| ||||| || | ||| | || || || ||||||||||| || || || |||||
Sbjct 3378 AGATACCATTGATAACGTCAAGACAAAGATCCAAGACAAGGAGGGCATCCCACCCGACCA 3319
Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584
|| || | ||||| ||||| |||||| | ||||||| | | || || | || || ||
Sbjct 3318 ACAACGATTGATTTTCGCTGGAAAGCAATTGGAGGATGGTAGAACTCTTTCGGATTACAA 3259
Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACAA 27636
| |||||||| ||| | || | || | ||||| || ||||| |||
Sbjct 3258 CATTCAAAAGGAGAGCACCTTGCACTTGGTGCTTCGTCTCCGTGGTGGCCAA 3207
>seq5062
Length=19932
Score = 125 bits (138), Expect = 8e-24
Identities = 164/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| ||||| |||||||| || || || || || || || || ||||| |||||
Sbjct 11304 ATGCAGATCTTCGTCAAGACCCTCACGGGTAAAACCATCACCCTAGAGGTCGAGTCCTCC 11245
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | || | ||| | || | || || ||||| ||||||||||| || || || ||
Sbjct 11244 GACACTATCGATAATGTCAAAACCAAGATCCAGGATAAGGAGGGAATCCCACCTGATCAA 11185
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|| |||||||| || || || ||||||||||| |||| || || || | || || ||
Sbjct 11184 CAACGTCTAATCTTCGCCGGCAAGCAACTCGAAGATGGCCGCACTCTTTCCGATTACAAC 11125
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| ||||| || |||||||| | ||| ||||| | || || ||
Sbjct 11124 ATCCAGAAGGAGTCGACTCTTCACTTGGTCCTGCGTTTACGTGGAGG 11078
>seq5771
Length=11851
Score = 116 bits (128), Expect = 4e-21
Identities = 141/192 (73%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 27407 TGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTG 27466
|||| | ||| |||||||| | || || ||||| || || |||||||| || || |
Sbjct 7705 TGCATAGCTTCGTCAAGACCTTGACGGGTAAGACCATCACCCTTGAGGTCGAATCCTCCG 7646
Query 27467 ATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGC 27526
| | ||| | ||| | ||| | || ||||| ||||||||||||||||| || || || |
Sbjct 7645 ACACCATCGACAATGTCAAGACCAAGATTCAAGACAAGGAGGGAATTCCCCCGGATCAAC 7586
Query 27527 AGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATG 27586
| ||| | || || ||||| |||||||| ||||||| || || | | || |||||
Sbjct 7585 AACGTTTGATCTTCGCTGGAAAGCAACTTGAGGATGGACGCACTTTGTCTGATTATAACA 7526
Query 27587 TCCAAAAGGAAT 27598
||||||||| ||
Sbjct 7525 TCCAAAAGGTAT 7514
>seq4745
Length=15183
Score = 104 bits (114), Expect = 3e-17
Identities = 302/458 (66%), Gaps = 13/458 (3%)
Strand=Plus/Minus
Query 64708 TTTGGTCAGCGTCTCGCAGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTC 64767
|||| ||| ||||||| || || || || ||||| || ||||| ||| || |||
Sbjct 9142 TTTGCTCAACGTCTCGTCGCATTCGCTGCCGTTGAAGGTATCTTCTTCAGTGGTTCCTTC 9083
Query 64768 TGTTCTATTTTCTGGCTAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAG 64827
|||||||||||||| || ||||| ||| ||||| | ||||| | ||||| ||||||
Sbjct 9082 GCCTCTATTTTCTGGCTCAAGAAGCGTGGCTTGATGGCTGGTCTCACCTTTTCCAACGAG 9023
Query 64828 CTGATCTCTCGGGACGAGGGGCTCCACCAAGAATTTGCGGTTACC--CTGTTCAGCCACC 64885
|| ||||| || |||||||| || || || || || | || || ||| |||
Sbjct 9022 CTCATCTCCCGTGACGAGGGTCTTCATACCGACTT--CGCCTGCCTGCTCTTCTCGCACT 8965
Query 64886 TCAAGGA-CAAACCATCACATGGGACTATAATTGATATAGTAAAATCGGCTGTAGAAATT 64944
| ||| | | | | || | | | | | ||| | | | | |||||| | |||
Sbjct 8964 TGAAGCATCGCCCAAGCAAACAAGCCGTTCA-GGATGTTATTACAGAGGCTGTCCAGATT 8906
Query 64945 GAAAAGGAATTCATTACTGCCGCGCTTCCGTGTCGTCTCATCGGCATGGATGCCGATAAG 65004
|| | |||||| | || | || ||||| ||| |||| | |||||| | | ||| |
Sbjct 8905 GAGCAAGAATTCTTGACGGAAGCTCTTCCATGTGCTCTCCTTGGCATGAACTCGGATTTG 8846
Query 65005 ATGAAACAGTATATCGAATTTGTAGCAGATCGCCTGCTTACTCAGTTTGGTATT---AAG 65061
||||| || || || || || || ||||| || || ||| | |||||| | |||
Sbjct 8845 ATGAAGCAATACATTGAGTTCGTCGCAGACCGTCTTCTTGTTGCTCTTGGTAATGAGAAG 8786
Query 65062 CCCTACTGGAATTCTTCAAATCCATTTGACTGGATGGAGACGATCAGCCTGGAGGGGAAG 65121
||| | || | |||||||| |||| ||||| | || || | || |||
Sbjct 8785 GTTTACCG---ATCAGCCAATCCATTCGACTTCATGGAAAACATTTCTCTCGCAGGCAAG 8729
Query 65122 ACTAACTTTTTTGAAAAGAGGGTAGGTGATTACTCAAA 65159
|| ||||| || || ||| | || || || ||| ||||
Sbjct 8728 ACCAACTTCTTCGAGAAGCGAGTTGGCGACTAC-CAAA 8692
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570258038376400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |