Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20echinophila_20[genbank_20GCA_5F000812885.1_202014-12- 31] 7,345 sequences; 40,250,382 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq4887 183 3e-41 seq894 158 1e-33 seq5062 125 8e-24 seq5771 116 4e-21 seq4745 104 3e-17 >seq4887 Length=16554 Score = 183 bits (202), Expect = 3e-41 Identities = 522/798 (65%), Gaps = 11/798 (1%) Strand=Plus/Minus Query 80950 TCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGAC 81009 ||||||||||| |||||||| || || ||||| || ||||| || ||||| | Sbjct 11049 TCGACGATTTCTGTGCACAAGTTGGAGCTACGGATTGTGCCGAGGTTCTTTTGGTTACTC 10990 Query 81010 TTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTG 81069 || ||||||||| || ||||| |||| | ||| | || ||||| ||| | || Sbjct 10989 TTTTTGTTGCAAGCATCTTTGTAAAGCATGAAAGGGTTTCCAGTCTCAGTCTGGGCCTCA 10930 Query 81070 AGGATGGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACA 81129 ||||||| | ||||| || | ||||||| ||| || ||| |||| | | Sbjct 10929 AGGATGGAATACCAAAGCTTTTGAGCCTTGATGGTCTTACGACCTTTACCTTGTCTCTCG 10870 Query 81130 TA--CTTGGCGTAAGCTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCACT 81187 || ||| | || | ||||| | |||| | | |||| | | |||| || | Sbjct 10869 TAACCTT--CATAGAGAGCCTCGAATTCATCACCATAGACATCAGCCAAGCCTGGACATT 10812 Query 81188 CGTTAGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAG 81247 ||||||||||||| || |||||| || || || ||| ||||||||| || | Sbjct 10811 CGTTAGGGCACATGAGTGTCCAGTCTCCGTTCTTTTCAACACGCTTCATGAAGAGATCTG 10752 Query 81248 GGATCCAGAGGGCGGTGAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGTTGAGGC 81307 | ||||||||||| ||| || ||||| | | ||||| | || ||||| | Sbjct 10751 GAATCCAGAGGGCATAGAAGAGATCGCGTGCTCTAACTTCCTCTTTGCCGTGGTTCTTTC 10692 Query 81308 GCAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGACC 81367 | | || | || || | || |||||||||||||| || || || ||||| | | | Sbjct 10691 GGAGGTCCAAGAACTCAAAGACATCCGCATGCCATGGTTCAAGGTAAACGGCAAATGCAC 10632 Query 81368 CCTTGCGACGG---CCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACA 81424 | ||| | ||||| |||| ||| || | || || ||| || || || | || Sbjct 10631 CAGGGCGCTTGTTACCACCTTGGTCGACATATCTAGCGGTGTTGTTGAAAACTCGAAGCA 10572 Query 81425 TAGGGATGATACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCA 81484 |||| | |||||| | || | |||||| || || | || | || | || || | Sbjct 10571 TAGGAACGATACCGTTAGAGTTACCGTTTGTGCCTGCAATGTAGGCACCAGTAGCACGGA 10512 Query 81485 CCTTGCTGATTGAAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCA 81544 || ||| ||||| || ||||| | |||||||||| |||||| |||| Sbjct 10511 TTCTGTGGATGTTGAGACCAATACCACCAGCGTTCTTTGAAATCATAGCACAAATCTTCA 10452 Query 81545 TGGTCTCATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACA 81604 || ||||| || || || || ||||| | ||||| |||| | ||| || ||| | Sbjct 10451 AAGTATCATAGATACCATCAATACTATCCTCCTTCATATCAATAAGGAAGCATGATGAAA 10392 Query 81605 TCTGAGGGCTTTTTGAG--CCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACG 81662 ||||| | | | ||| || ||| ||| |||||||| | ||||| | || || Sbjct 10391 GCTGAG--CCTGTGGAGTACCCGCAGAGAAGAGTGTTGGAGAAGCGTGTGTAAAGTATTT 10334 Query 81663 GTTTGACATCAGGTCATAGGTTTCCTTGACGCGTGGAATATCGTCACCGTGAATACCGAT 81722 ||| ||||||| || || ||||| || | | | |||||| |||||||||||||| | Sbjct 10333 GTTGGACATCAAGTTGTATGTTTCGATGGCACTTTCAATATCATCACCGTGAATACCAAC 10274 Query 81723 AGCTACACGCATAAACAT 81740 || |||||||| | ||| Sbjct 10273 GGCAACACGCATGATCAT 10256 Score = 95.1 bits (104), Expect = 1e-14 Identities = 131/182 (72%), Gaps = 6/182 (3%) Strand=Plus/Minus Query 80038 GTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGCATAGAA 80097 || || ||||||||||| || |||||||| || ||||| || | ||||| ||| Sbjct 11973 GTACGGAGATAGTACATTCCAGTCTTGAGACCTAATTTCCATCCAGCAAAATGCATGGAA 11914 Query 80098 CTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGACAGATG 80157 ||| ||| | | ||| |||| || |||| |||||||| || ||||| ||| |||| Sbjct 11913 GTGATCTTGCCCATTGTAGGGTCCTTCATGTGGATGTTCATTGATTGAGATTGATCGATG 11854 Query 80158 AAAGCCCCACGATCTGCCGCCATTTCAATAATTGACTTTTGTGGA---ATTTCCCATACT 80214 ||||| ||||| ||||| ||||| | || ||| ||| || || |||||||| || Sbjct 11853 AAAGCACCACGGTCTGCGGCCATCTGAACAAT---GTTTCGTTGAGAGATTTCCCAAACA 11797 Query 80215 GT 80216 || Sbjct 11796 GT 11795 >seq894 Length=6424 Score = 158 bits (174), Expect = 1e-33 Identities = 159/204 (78%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489 ||||||||||| || || ||||||||||| || || | || | || | ||| || Sbjct 4153 ACCGGCAAGACCATCACCCTTGAGGTTGAATCTTCCGACACTATCGACAACGTCAAGACT 4094 Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || || ||||| |||||||| |||||||| ||||| |||||| | || |||||||| ||| Sbjct 4093 AAGATCCAGGATAAGGAGGGTATTCCTCCTGACCAACAGCGTTTGATCTTTGCTGGCAAG 4034 Query 27550 CAACTCGAGGATGATCGTACCCT-AGCAGACTATAATGTCCAAAAGGAATCCACTCTTCA 27608 ||||||||||||| |||||| | ||| ||||| || |||| ||||| || ||||| || Sbjct 4033 CAACTCGAGGATGGTCGTACTTTGAGC-GACTACAACATCCAGAAGGAGTCTACTCTCCA 3975 Query 27609 TCTAGTCTTGCGTCTTCGCGGTGG 27632 ||| ||| | |||||||| || || Sbjct 3974 TCTCGTCCTCCGTCTTCGTGGCGG 3951 Score = 154 bits (170), Expect = 2e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || |||||||| |||||||| ||||| || ||| | |||||||||||| | Sbjct 3665 ATGCAGATTTTCGTCAAGACTCTTACCGGAAAGACAATCACTTTGGAGGTTGAGTCATCT 3606 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | || | ||| || ||||| |||||||| || ||||| || || || Sbjct 3605 GATACTATCGACAACGTAAAGAGCAAGATTCAAGACAAGGAAGGCATTCCACCTGATCAA 3546 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||||| || || ||||||||||| | ||||||| |||||||| | ||||| || Sbjct 3545 CAACGTCTCATCTTCGCTGGTAAGCAGTTGGAGGATGGCCGTACCCTGTCGGACTACAAC 3486 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 | |||||||| || ||| | ||| | || | || ||||| |||||| Sbjct 3485 ATTCAAAAGGAGTCGACTTTACATTTGGTTCTTCGCCTTCGTGGTGGA 3438 Score = 140 bits (154), Expect = 4e-28 Identities = 160/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 27418 GTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCA 27477 |||||||| || |||||||||||||| |||||||||||||| || |||| || | Sbjct 3881 GTCAAGACTCTCACCGGCAAGACTATCACTCTTGAGGTTGAATCTTCGGATACTATCGAC 3822 Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537 ||| | ||| | || ||||| || |||||||| || || || || || || ||| | || Sbjct 3821 AATGTTAAGACCAAGATTCAAGATAAGGAGGGTATCCCCCCTGATCAACAACGTTTGATC 3762 Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAA 27597 || ||||| |||||||| ||||| | || || || | ||||| || |||| |||||| Sbjct 3761 TTCGCTGGCAAGCAACTTGAGGACGGCCGCACTCTTTCCGACTACAACATCCAGAAGGAA 3702 Query 27598 TCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || ||| | ||| | || || | ||||| ||||| Sbjct 3701 TCGACTTTACATTTGGTTCTGAGACTTCGTGGTGG 3667 Score = 116 bits (128), Expect = 4e-21 Identities = 165/232 (71%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||||||||| ||||| | || || ||||| ||||| | ||||| || || Sbjct 3438 AATGCAAATCTTTGTTAAGACTTTGACTGGAAAGACAATTACGTTAGAGGTGGAATCGTC 3379 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 |||| ||||| || | ||| | || || || ||||||||||| || || || ||||| Sbjct 3378 AGATACCATTGATAACGTCAAGACAAAGATCCAAGACAAGGAGGGCATCCCACCCGACCA 3319 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 || || | ||||| ||||| |||||| | ||||||| | | || || | || || || Sbjct 3318 ACAACGATTGATTTTCGCTGGAAAGCAATTGGAGGATGGTAGAACTCTTTCGGATTACAA 3259 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACAA 27636 | |||||||| ||| | || | || | ||||| || ||||| ||| Sbjct 3258 CATTCAAAAGGAGAGCACCTTGCACTTGGTGCTTCGTCTCCGTGGTGGCCAA 3207 >seq5062 Length=19932 Score = 125 bits (138), Expect = 8e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || || || || || || || || ||||| ||||| Sbjct 11304 ATGCAGATCTTCGTCAAGACCCTCACGGGTAAAACCATCACCCTAGAGGTCGAGTCCTCC 11245 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | ||| | || | || || ||||| ||||||||||| || || || || Sbjct 11244 GACACTATCGATAATGTCAAAACCAAGATCCAGGATAAGGAGGGAATCCCACCTGATCAA 11185 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || |||||||| || || || ||||||||||| |||| || || || | || || || Sbjct 11184 CAACGTCTAATCTTCGCCGGCAAGCAACTCGAAGATGGCCGCACTCTTTCCGATTACAAC 11125 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || |||||||| | ||| ||||| | || || || Sbjct 11124 ATCCAGAAGGAGTCGACTCTTCACTTGGTCCTGCGTTTACGTGGAGG 11078 >seq5771 Length=11851 Score = 116 bits (128), Expect = 4e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 27407 TGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTG 27466 |||| | ||| |||||||| | || || ||||| || || |||||||| || || | Sbjct 7705 TGCATAGCTTCGTCAAGACCTTGACGGGTAAGACCATCACCCTTGAGGTCGAATCCTCCG 7646 Query 27467 ATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGC 27526 | | ||| | ||| | ||| | || ||||| ||||||||||||||||| || || || | Sbjct 7645 ACACCATCGACAATGTCAAGACCAAGATTCAAGACAAGGAGGGAATTCCCCCGGATCAAC 7586 Query 27527 AGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATG 27586 | ||| | || || ||||| |||||||| ||||||| || || | | || ||||| Sbjct 7585 AACGTTTGATCTTCGCTGGAAAGCAACTTGAGGATGGACGCACTTTGTCTGATTATAACA 7526 Query 27587 TCCAAAAGGAAT 27598 ||||||||| || Sbjct 7525 TCCAAAAGGTAT 7514 >seq4745 Length=15183 Score = 104 bits (114), Expect = 3e-17 Identities = 302/458 (66%), Gaps = 13/458 (3%) Strand=Plus/Minus Query 64708 TTTGGTCAGCGTCTCGCAGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTC 64767 |||| ||| ||||||| || || || || ||||| || ||||| ||| || ||| Sbjct 9142 TTTGCTCAACGTCTCGTCGCATTCGCTGCCGTTGAAGGTATCTTCTTCAGTGGTTCCTTC 9083 Query 64768 TGTTCTATTTTCTGGCTAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAG 64827 |||||||||||||| || ||||| ||| ||||| | ||||| | ||||| |||||| Sbjct 9082 GCCTCTATTTTCTGGCTCAAGAAGCGTGGCTTGATGGCTGGTCTCACCTTTTCCAACGAG 9023 Query 64828 CTGATCTCTCGGGACGAGGGGCTCCACCAAGAATTTGCGGTTACC--CTGTTCAGCCACC 64885 || ||||| || |||||||| || || || || || | || || ||| ||| Sbjct 9022 CTCATCTCCCGTGACGAGGGTCTTCATACCGACTT--CGCCTGCCTGCTCTTCTCGCACT 8965 Query 64886 TCAAGGA-CAAACCATCACATGGGACTATAATTGATATAGTAAAATCGGCTGTAGAAATT 64944 | ||| | | | | || | | | | | ||| | | | | |||||| | ||| Sbjct 8964 TGAAGCATCGCCCAAGCAAACAAGCCGTTCA-GGATGTTATTACAGAGGCTGTCCAGATT 8906 Query 64945 GAAAAGGAATTCATTACTGCCGCGCTTCCGTGTCGTCTCATCGGCATGGATGCCGATAAG 65004 || | |||||| | || | || ||||| ||| |||| | |||||| | | ||| | Sbjct 8905 GAGCAAGAATTCTTGACGGAAGCTCTTCCATGTGCTCTCCTTGGCATGAACTCGGATTTG 8846 Query 65005 ATGAAACAGTATATCGAATTTGTAGCAGATCGCCTGCTTACTCAGTTTGGTATT---AAG 65061 ||||| || || || || || || ||||| || || ||| | |||||| | ||| Sbjct 8845 ATGAAGCAATACATTGAGTTCGTCGCAGACCGTCTTCTTGTTGCTCTTGGTAATGAGAAG 8786 Query 65062 CCCTACTGGAATTCTTCAAATCCATTTGACTGGATGGAGACGATCAGCCTGGAGGGGAAG 65121 ||| | || | |||||||| |||| ||||| | || || | || ||| Sbjct 8785 GTTTACCG---ATCAGCCAATCCATTCGACTTCATGGAAAACATTTCTCTCGCAGGCAAG 8729 Query 65122 ACTAACTTTTTTGAAAAGAGGGTAGGTGATTACTCAAA 65159 || ||||| || || ||| | || || || ||| |||| Sbjct 8728 ACCAACTTCTTCGAGAAGCGAGTTGGCGACTAC-CAAA 8692 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570258038376400