Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rutstroemia_20echinophila_20[genbank_20GCA_5F000812885.1_202014-12-
31] 7,345 sequences; 40,250,382 total letters
Query= NC_028491.1
Length=98392
Score E
Sequences producing significant alignments: (Bits) Value
seq894 122 5e-23
seq5771 84.2 1e-11
>seq894
Length=6424
Score = 122 bits (134), Expect = 5e-23
Identities = 162/220 (74%), Gaps = 4/220 (2%)
Strand=Plus/Plus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
||||| | |||||| || | |||||||||||||||||||| ||||| ||||| ||||
Sbjct 3220 AGACGAAGCACCAAGTGCAAGGTGCTCTCCTTTTGAATGTTGTAATCCGAAAGAGTTCTA 3279
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
| || || | ||| || || || || || || || |||||||| || || | ||||||
Sbjct 3280 CCATCCTCCAATTGCTTTCCAGCGAAAATCAATCGTTGTTGGTCGGGTGGGATGCCCTCC 3339
Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATA-AAATTGTGTCT-TCGCTCTCCACTTCCACGG 34666
|||||| |||| ||||| || ||| || ||| || ||| || | ||||| || | |
Sbjct 3340 TTGTCTTGGATC-TTTGTCTTGACGTTATCAATGGTATCTGACGAT-TCCACCTCTAACG 3397
Query 34667 TTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
| || || || || || || || || ||||| || |||||
Sbjct 3398 TAATTGTCTTTCCAGTCAAAGTCTTAACAAAGATTTGCAT 3437
>seq5771
Length=11851
Score = 84.2 bits (92), Expect = 1e-11
Identities = 82/106 (77%), Gaps = 0/106 (0%)
Strand=Plus/Plus
Query 34517 CCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATA 34576
||||||| ||||||||||| || | || || | || |||||||| || || || || |
Sbjct 7517 CCTTTTGGATGTTATAATCAGACAAAGTGCGTCCATCCTCAAGTTGCTTTCCAGCGAAGA 7576
Query 34577 TTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTT 34622
| ||||| ||||| ||||| || | ||||||||||||| |||||
Sbjct 7577 TCAAACGTTGTTGATCCGGGGGAATTCCCTCCTTGTCTTGAATCTT 7622
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 314701426291385
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |