Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rutstroemia_20echinophila_20[genbank_20GCA_5F000812885.1_202014-12-
31] 7,345 sequences; 40,250,382 total letters
Query= NC_028636.1
Length=135952
Score E
Sequences producing significant alignments: (Bits) Value
seq894 150 2e-31
seq5062 129 5e-25
seq5771 84.2 2e-11
>seq894
Length=6424
Score = 150 bits (166), Expect = 2e-31
Identities = 170/228 (75%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
||||| || ||||| || ||| |||| || ||| | ||||| | || |||||| ||||
Sbjct 3437 ATGCAAATCTTTGTTAAGACTTTGACTGGAAAGACAATTACGTTAGAGGTGGAATCGTCA 3378
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
|| | ||||| | ||||| ||| || |||||||| || ||||| |||||||| |||
Sbjct 3377 GATACCATTGATAACGTCAAGACAAAGATCCAAGACAAGGAGGGCATCCCACCCGACCAA 3318
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
|| || || || | ||| || || |||||||| || || || |||| |||||||||
Sbjct 3317 CAACGATTGATTTTCGCTGGAAAGCAATTGGAGGATGGTAGAACTCTTTCGGATTACAAC 3258
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215
|||||||||||| ||||| || ||||| | ||| | || ||||||
Sbjct 3257 ATTCAAAAGGAGAGCACCTTGCACTTGGTGCTTCGTCTCCGTGGTGGC 3210
Score = 140 bits (154), Expect = 3e-28
Identities = 169/230 (73%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| || || || ||||| ||||| ||| | || ||| | || || || | ||
Sbjct 3665 ATGCAGATTTTCGTCAAGACTCTTACCGGAAAGACAATCACTTTGGAGGTTGAGTCATCT 3606
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
|| | || || | || || || ||||||||||| |||||||| ||||| ||||||
Sbjct 3605 GATACTATCGACAACGTAAAGAGCAAGATTCAAGACAAGGAAGGCATTCCACCTGATCAA 3546
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
|| ||| | || | ||| || || || ||||| || | ||| | || || ||||||
Sbjct 3545 CAACGTCTCATCTTCGCTGGTAAGCAGTTGGAGGATGGCCGTACCCTGTCGGACTACAAC 3486
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
||||||||||||||||| |||||||||||| | || | || ||||| ||
Sbjct 3485 ATTCAAAAGGAGTCGACTTTACATTTGGTTCTTCGCCTTCGTGGTGGAAT 3436
Score = 134 bits (148), Expect = 1e-26
Identities = 164/224 (73%), Gaps = 0/224 (0%)
Strand=Plus/Minus
Query 26994 ATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCG 27053
||| | || || ||||| ||||||||| |||| |||||||| || ||| | || || |
Sbjct 3887 ATAGTCGTCAAGACTCTCACCGGCAAGACTATCACTCTTGAGGTTGAATCTTCGGATACT 3828
Query 27054 ATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGT 27113
|| || | || || || |||||||| || || || || || || |||||||| |||
Sbjct 3827 ATCGACAATGTTAAGACCAAGATTCAAGATAAGGAGGGTATCCCCCCTGATCAACAACGT 3768
Query 27114 TTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAA 27173
|| || | ||| ||||| ||| | || ||| | || ||||||| |||||||| ||
Sbjct 3767 TTGATCTTCGCTGGCAAGCAACTTGAGGACGGCCGCACTCTTTCCGACTACAACATCCAG 3708
Query 27174 AAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
||||| ||||| |||||||||||| || | | || ||||| ||
Sbjct 3707 AAGGAATCGACTTTACATTTGGTTCTGAGACTTCGTGGTGGTAT 3664
>seq5062
Length=19932
Score = 129 bits (142), Expect = 5e-25
Identities = 173/240 (72%), Gaps = 3/240 (1%)
Strand=Plus/Minus
Query 26978 TTTATACGC---CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGA 27034
|||||| || ||||||||| || || || || || || || || | || || || ||
Sbjct 11317 TTTATAGGCAGTCATGCAGATCTTCGTCAAGACCCTCACGGGTAAAACCATCACCCTAGA 11258
Query 27035 AGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCAT 27094
|| || | |||||| | || || | |||||| || || || || || || || ||
Sbjct 11257 GGTCGAGTCCTCCGACACTATCGATAATGTCAAAACCAAGATCCAGGATAAGGAGGGAAT 11198
Query 27095 ACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGT 27154
||||| |||||||| ||| |||| | ||||||||| ||| | ||||| | || |
Sbjct 11197 CCCACCTGATCAACAACGTCTAATCTTCGCCGGCAAGCAACTCGAAGATGGCCGCACTCT 11138
Query 27155 TTCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214
||||||||||||||| || ||||||||||| | || ||||| ||||||| || || ||
Sbjct 11137 TTCCGATTACAACATCCAGAAGGAGTCGACTCTTCACTTGGTCCTGCGTTTACGTGGAGG 11078
>seq5771
Length=11851
Score = 84.2 bits (92), Expect = 2e-11
Identities = 132/189 (70%), Gaps = 0/189 (0%)
Strand=Plus/Minus
Query 26989 TGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCG 27048
|||| | || || || || |||| || ||| | || || ||||| || ||| | ||||
Sbjct 7705 TGCATAGCTTCGTCAAGACCTTGACGGGTAAGACCATCACCCTTGAGGTCGAATCCTCCG 7646
Query 27049 ACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAAC 27108
|| | || || | ||||| || ||||||||||| || || || || || |||||||
Sbjct 7645 ACACCATCGACAATGTCAAGACCAAGATTCAAGACAAGGAGGGAATTCCCCCGGATCAAC 7586
Query 27109 AGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACA 27168
| ||||| || | ||| || || ||| | || || | || | || ||||| ||||
Sbjct 7585 AACGTTTGATCTTCGCTGGAAAGCAACTTGAGGATGGACGCACTTTGTCTGATTATAACA 7526
Query 27169 TTCAAAAGG 27177
| |||||||
Sbjct 7525 TCCAAAAGG 7517
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 434878469054400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |