Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20echinophila_20[genbank_20GCA_5F000812885.1_202014-12- 31] 7,345 sequences; 40,250,382 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq894 150 2e-31 seq5062 129 5e-25 seq5771 84.2 2e-11 >seq894 Length=6424 Score = 150 bits (166), Expect = 2e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || ||| |||| || ||| | ||||| | || |||||| |||| Sbjct 3437 ATGCAAATCTTTGTTAAGACTTTGACTGGAAAGACAATTACGTTAGAGGTGGAATCGTCA 3378 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | ||||| ||| || |||||||| || ||||| |||||||| ||| Sbjct 3377 GATACCATTGATAACGTCAAGACAAAGATCCAAGACAAGGAGGGCATCCCACCCGACCAA 3318 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || || || || | ||| || || |||||||| || || || |||| ||||||||| Sbjct 3317 CAACGATTGATTTTCGCTGGAAAGCAATTGGAGGATGGTAGAACTCTTTCGGATTACAAC 3258 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 |||||||||||| ||||| || ||||| | ||| | || |||||| Sbjct 3257 ATTCAAAAGGAGAGCACCTTGCACTTGGTGCTTCGTCTCCGTGGTGGC 3210 Score = 140 bits (154), Expect = 3e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || ||||| ||||| ||| | || ||| | || || || | || Sbjct 3665 ATGCAGATTTTCGTCAAGACTCTTACCGGAAAGACAATCACTTTGGAGGTTGAGTCATCT 3606 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | || || || ||||||||||| |||||||| ||||| |||||| Sbjct 3605 GATACTATCGACAACGTAAAGAGCAAGATTCAAGACAAGGAAGGCATTCCACCTGATCAA 3546 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||| | || | ||| || || || ||||| || | ||| | || || |||||| Sbjct 3545 CAACGTCTCATCTTCGCTGGTAAGCAGTTGGAGGATGGCCGTACCCTGTCGGACTACAAC 3486 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||||||||||||||| |||||||||||| | || | || ||||| || Sbjct 3485 ATTCAAAAGGAGTCGACTTTACATTTGGTTCTTCGCCTTCGTGGTGGAAT 3436 Score = 134 bits (148), Expect = 1e-26 Identities = 164/224 (73%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 26994 ATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCG 27053 ||| | || || ||||| ||||||||| |||| |||||||| || ||| | || || | Sbjct 3887 ATAGTCGTCAAGACTCTCACCGGCAAGACTATCACTCTTGAGGTTGAATCTTCGGATACT 3828 Query 27054 ATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGT 27113 || || | || || || |||||||| || || || || || || |||||||| ||| Sbjct 3827 ATCGACAATGTTAAGACCAAGATTCAAGATAAGGAGGGTATCCCCCCTGATCAACAACGT 3768 Query 27114 TTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAA 27173 || || | ||| ||||| ||| | || ||| | || ||||||| |||||||| || Sbjct 3767 TTGATCTTCGCTGGCAAGCAACTTGAGGACGGCCGCACTCTTTCCGACTACAACATCCAG 3708 Query 27174 AAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| ||||| |||||||||||| || | | || ||||| || Sbjct 3707 AAGGAATCGACTTTACATTTGGTTCTGAGACTTCGTGGTGGTAT 3664 >seq5062 Length=19932 Score = 129 bits (142), Expect = 5e-25 Identities = 173/240 (72%), Gaps = 3/240 (1%) Strand=Plus/Minus Query 26978 TTTATACGC---CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGA 27034 |||||| || ||||||||| || || || || || || || || | || || || || Sbjct 11317 TTTATAGGCAGTCATGCAGATCTTCGTCAAGACCCTCACGGGTAAAACCATCACCCTAGA 11258 Query 27035 AGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCAT 27094 || || | |||||| | || || | |||||| || || || || || || || || Sbjct 11257 GGTCGAGTCCTCCGACACTATCGATAATGTCAAAACCAAGATCCAGGATAAGGAGGGAAT 11198 Query 27095 ACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGT 27154 ||||| |||||||| ||| |||| | ||||||||| ||| | ||||| | || | Sbjct 11197 CCCACCTGATCAACAACGTCTAATCTTCGCCGGCAAGCAACTCGAAGATGGCCGCACTCT 11138 Query 27155 TTCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||||||||||||||| || ||||||||||| | || ||||| ||||||| || || || Sbjct 11137 TTCCGATTACAACATCCAGAAGGAGTCGACTCTTCACTTGGTCCTGCGTTTACGTGGAGG 11078 >seq5771 Length=11851 Score = 84.2 bits (92), Expect = 2e-11 Identities = 132/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 26989 TGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCG 27048 |||| | || || || || |||| || ||| | || || ||||| || ||| | |||| Sbjct 7705 TGCATAGCTTCGTCAAGACCTTGACGGGTAAGACCATCACCCTTGAGGTCGAATCCTCCG 7646 Query 27049 ACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAAC 27108 || | || || | ||||| || ||||||||||| || || || || || ||||||| Sbjct 7645 ACACCATCGACAATGTCAAGACCAAGATTCAAGACAAGGAGGGAATTCCCCCGGATCAAC 7586 Query 27109 AGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACA 27168 | ||||| || | ||| || || ||| | || || | || | || ||||| |||| Sbjct 7585 AACGTTTGATCTTCGCTGGAAAGCAACTTGAGGATGGACGCACTTTGTCTGATTATAACA 7526 Query 27169 TTCAAAAGG 27177 | ||||||| Sbjct 7525 TCCAAAAGG 7517 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434878469054400