Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20echinophila_20[genbank_20GCA_5F000812885.1_202014-12- 31] 7,345 sequences; 40,250,382 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq5062 179 9e-40 seq894 167 5e-36 seq5771 134 3e-26 seq4887 109 1e-18 seq4603 86.0 1e-11 >seq5062 Length=19932 Score = 179 bits (198), Expect = 9e-40 Identities = 167/212 (79%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| | ||||||||| ||||| || |||||||| ||||| | ||| || | |||||| Sbjct 11093 AGGACCAAGTGAAGAGTCGACTCCTTCTGGATGTTGTAATCGGAAAGAGTGCGGCCATCT 11152 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || || |||||||| |||||||| || |||||||| ||||| || | ||| ||||| ||| Sbjct 11153 TCGAGTTGCTTGCCGGCGAAGATTAGACGTTGTTGATCAGGTGGGATTCCCTCCTTATCC 11212 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| ||| || || ||||| ||||| ||| || ||||| || ||||| || Sbjct 11213 TGGATCTTGGTTTTGACATTATCGATAGTGTCGGAGGACTCGACCTCTAGGGTGATGGTT 11272 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || |||||||| ||||| || || | |||||| Sbjct 11273 TTACCCGTGAGGGTCTTGACGAAGATCTGCAT 11304 >seq894 Length=6424 Score = 167 bits (184), Expect = 5e-36 Identities = 170/222 (77%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || || | || | ||| ||||| ||||| ||||| || |||| ||||| Sbjct 3444 ACGAAGGCGAAGAACCAAATGTAAAGTCGACTCCTTTTGAATGTTGTAGTCCGACAGGGT 3503 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||||| |||| |||||| || |||||||| || |||||||| ||||| |||| || Sbjct 3504 ACGGCCATCCTCCAACTGCTTACCAGCGAAGATGAGACGTTGTTGATCAGGTGGAATGCC 3563 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||||||| || ||||| || ||||| ||||| || ||||| |||||||| | Sbjct 3564 TTCCTTGTCTTGAATCTTGCTCTTTACGTTGTCGATAGTATCAGATGACTCAACCTCCAA 3623 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 |||||| |||||||| || |||||||| || || | |||||| Sbjct 3624 AGTGATTGTCTTTCCGGTAAGAGTCTTGACGAAAATCTGCAT 3665 Score = 143 bits (158), Expect = 6e-29 Identities = 154/201 (77%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATC-CGCAAGGG 210951 |||||| | ||||| || || ||||| ||||| || |||||||| || || | ||| | Sbjct 3956 ACGAAGACGGAGGACGAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTCAAAG- 4014 Query 210952 TCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTC 211011 | | ||||| || || |||||||| || ||||| | || |||||||||||||||| | Sbjct 4015 TACGACCATCCTCGAGTTGCTTGCCAGCAAAGATCAAACGCTGTTGGTCAGGAGGAATAC 4074 Query 211012 CTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGA 211071 | ||||| ||||||||||| || ||||| ||||| ||||| || ||||||||| | Sbjct 4075 CCTCCTTATCCTGGATCTTAGTCTTGACGTTGTCGATAGTGTCGGAAGATTCAACCTCAA 4134 Query 211072 GAGTGATCGTCTTTCCCGTGA 211092 | ||||| ||||| || |||| Sbjct 4135 GGGTGATGGTCTTGCCGGTGA 4155 Score = 136 bits (150), Expect = 9e-27 Identities = 146/193 (76%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 210923 CTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAA 210982 ||| ||||| ||||| ||||||| ||| || || ||||| |||| ||||| || ||||| Sbjct 3246 CTCCTTTTGAATGTTGTAATCCGAAAGAGTTCTACCATCCTCCAATTGCTTTCCAGCGAA 3305 Query 210983 GATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTT 211042 || | ||||||||||| || || | || |||||||| ||||||||| || ||||| Sbjct 3306 AATCAATCGTTGTTGGTCGGGTGGGATGCCCTCCTTGTCTTGGATCTTTGTCTTGACGTT 3365 Query 211043 TTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTAC 211102 || ||||| || || ||| ||||| | || || |||||||| || | |||||| || Sbjct 3366 ATCAATGGTATCTGACGATTCCACCTCTAACGTAATTGTCTTTCCAGTCAAAGTCTTAAC 3425 Query 211103 AAACACCTGCATT 211115 ||| | |||||| Sbjct 3426 AAAGATTTGCATT 3438 Score = 136 bits (150), Expect = 9e-27 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 ||||||||| || || | || | ||| || || || |||||||| || || | ||| || Sbjct 3672 ACGAAGTCTCAGAACCAAATGTAAAGTCGATTCCTTCTGGATGTTGTAGTCGGAAAGAGT 3731 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | || || || || |||||||| |||||||| | |||||||| ||||| || | || Sbjct 3732 GCGGCCGTCCTCAAGTTGCTTGCCAGCGAAGATCAAACGTTGTTGATCAGGGGGGATACC 3791 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||| || || ||||| || || || ||||| || || || ||||||||| || Sbjct 3792 CTCCTTATCTTGAATCTTGGTCTTAACATTGTCGATAGTATCCGAAGATTCAACCTCAAG 3851 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTAC 211102 |||||| ||||| || ||||||||||| || Sbjct 3852 AGTGATAGTCTTGCCGGTGAGAGTCTTGAC 3881 >seq5771 Length=11851 Score = 134 bits (148), Expect = 3e-26 Identities = 137/179 (77%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986 ||||||||||||||||| | | || | |||||| || || ||||| || |||||||| Sbjct 7519 TTTTGGATGTTATAATCAGACAAAGTGCGTCCATCCTCAAGTTGCTTTCCAGCGAAGATC 7578 Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046 | |||||||| || || |||| ||| |||||||| || ||||| || || || ||| Sbjct 7579 AAACGTTGTTGATCCGGGGGAATTCCCTCCTTGTCTTGAATCTTGGTCTTGACATTGTCG 7638 Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105 |||||||| ||| ||| ||||| || ||||| ||||| ||||| | ||||| || || Sbjct 7639 ATGGTGTCGGAGGATTCGACCTCAAGGGTGATGGTCTTACCCGTCAAGGTCTTGACGAA 7697 >seq4887 Length=16554 Score = 109 bits (120), Expect = 1e-18 Identities = 194/278 (70%), Gaps = 10/278 (4%) Strand=Plus/Minus Query 178093 GTTCTTTTGGTTGCTCTTTCTG---CAAATGGCATCTTTGTACGCAATGAAGGGCATTCC 178149 |||||||||||| |||||| || ||| ||||||||||| ||||| || |||| Sbjct 11005 GTTCTTTTGGTTACTCTTTTTGTTGCAA---GCATCTTTGTAAAGCATGAAAGGGTTTCC 10949 Query 178150 CACCTCAGCTTGAGCCACGAGAATGTGATGCCAAAGCTCCTGGGCTCGGACAGTCTTTTT 178209 ||||| || ||| | || ||| || |||||||| || || || ||||| Sbjct 10948 AGTCTCAGTCTGGGCCTCAAGGATGGAATACCAAAGCTTTTGAGCCTTGATGGTCTTACG 10889 Query 178210 GGCTTTTCCTTCATTCTCGTACTTTTTGTAGAGCTCCTCGAATTCCGGTCCATAGACATC 178269 |||| |||| ||||||| || ||||| |||||||||| ||||||||||| Sbjct 10888 ACCTTTACCTTGTCTCTCGTAACCTTCATAGAGAGCCTCGAATTCATCACCATAGACATC 10829 Query 178270 ATCGAGACCGGGAGCCTCATTGGGGCAGAAGAGACTCCACTGACCGT-CTTCCTTCA-CT 178327 | | | || ||| || || ||||| | ||| |||| | |||| ||| |||| | Sbjct 10828 AGCCAAGCCTGGACATTCGTTAGGGCACATGAGTGTCCAGTCTCCGTTCTT--TTCAACA 10771 Query 178328 CGTTTCATGAAGAGGTCAGAGGTCCAGATGGCATAGAA 178365 || ||||||||||| || | |||||| ||||||||| Sbjct 10770 CGCTTCATGAAGAGATCTGGAATCCAGAGGGCATAGAA 10733 >seq4603 Length=15718 Score = 86.0 bits (94), Expect = 1e-11 Identities = 122/172 (71%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 139810 CCAAAGAAGCACGGAAGAGGAGGACAATCTGCTCTGCGTTTTGAAAGACTTCGAAAGGAA 139869 |||||||||||||| | || || ||||||||||| ||||| | | | ||||| ||||| Sbjct 4614 CCAAAGAAGCACGGTCGTGGTGGTCAATCTGCTCTCCGTTTCGCACGTCTTCGTGAGGAA 4673 Query 139870 AAGAGGCACAACTACTTGAGAAAAGTTGCAGAGAACGCAATACAGTGTTTTATCAAAGAC 139929 ||| | ||||||||| | |||| ||||| || || |||| || |||| | Sbjct 4674 AAGCGCCACAACTACGTTCGAAAGGTTGCTGAACTTGCGGTACAAAACTTCATCACTGCA 4733 Query 139930 AACAAGTGTTTTGTTTCTGGTATTGTTTTGGCAGGTTCCGCAGAGTTCAAGA 139981 ||||| ||| |||||||| | || || || || || || ||||||| Sbjct 4734 GACAAGGTCAATGTGGCTGGTATTATCTTAGCTGGATCTGCCGATTTCAAGA 4785 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159042914740925