Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rutstroemia_20echinophila_20[genbank_20GCA_5F000812885.1_202014-12-
31] 7,345 sequences; 40,250,382 total letters
Query= NC_029692.1
Length=362276
Score E
Sequences producing significant alignments: (Bits) Value
seq5062 179 9e-40
seq894 167 5e-36
seq5771 134 3e-26
seq4887 109 1e-18
seq4603 86.0 1e-11
>seq5062
Length=19932
Score = 179 bits (198), Expect = 9e-40
Identities = 167/212 (79%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
||||| | ||||||||| ||||| || |||||||| ||||| | ||| || | ||||||
Sbjct 11093 AGGACCAAGTGAAGAGTCGACTCCTTCTGGATGTTGTAATCGGAAAGAGTGCGGCCATCT 11152
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| || |||||||| |||||||| || |||||||| ||||| || | ||| ||||| |||
Sbjct 11153 TCGAGTTGCTTGCCGGCGAAGATTAGACGTTGTTGATCAGGTGGGATTCCCTCCTTATCC 11212
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|||||||| ||| || || ||||| ||||| ||| || ||||| || ||||| ||
Sbjct 11213 TGGATCTTGGTTTTGACATTATCGATAGTGTCGGAGGACTCGACCTCTAGGGTGATGGTT 11272
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| |||||||| ||||| || || | ||||||
Sbjct 11273 TTACCCGTGAGGGTCTTGACGAAGATCTGCAT 11304
>seq894
Length=6424
Score = 167 bits (184), Expect = 5e-36
Identities = 170/222 (77%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952
|||||| | || || | || | ||| ||||| ||||| ||||| || |||| |||||
Sbjct 3444 ACGAAGGCGAAGAACCAAATGTAAAGTCGACTCCTTTTGAATGTTGTAGTCCGACAGGGT 3503
Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012
| ||||| |||| |||||| || |||||||| || |||||||| ||||| |||| ||
Sbjct 3504 ACGGCCATCCTCCAACTGCTTACCAGCGAAGATGAGACGTTGTTGATCAGGTGGAATGCC 3563
Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072
||||||||| || ||||| || ||||| ||||| || ||||| |||||||| |
Sbjct 3564 TTCCTTGTCTTGAATCTTGCTCTTTACGTTGTCGATAGTATCAGATGACTCAACCTCCAA 3623
Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|||||| |||||||| || |||||||| || || | ||||||
Sbjct 3624 AGTGATTGTCTTTCCGGTAAGAGTCTTGACGAAAATCTGCAT 3665
Score = 143 bits (158), Expect = 6e-29
Identities = 154/201 (77%), Gaps = 2/201 (1%)
Strand=Plus/Plus
Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATC-CGCAAGGG 210951
|||||| | ||||| || || ||||| ||||| || |||||||| || || | ||| |
Sbjct 3956 ACGAAGACGGAGGACGAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTCAAAG- 4014
Query 210952 TCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTC 211011
| | ||||| || || |||||||| || ||||| | || |||||||||||||||| |
Sbjct 4015 TACGACCATCCTCGAGTTGCTTGCCAGCAAAGATCAAACGCTGTTGGTCAGGAGGAATAC 4074
Query 211012 CTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGA 211071
| ||||| ||||||||||| || ||||| ||||| ||||| || ||||||||| |
Sbjct 4075 CCTCCTTATCCTGGATCTTAGTCTTGACGTTGTCGATAGTGTCGGAAGATTCAACCTCAA 4134
Query 211072 GAGTGATCGTCTTTCCCGTGA 211092
| ||||| ||||| || ||||
Sbjct 4135 GGGTGATGGTCTTGCCGGTGA 4155
Score = 136 bits (150), Expect = 9e-27
Identities = 146/193 (76%), Gaps = 0/193 (0%)
Strand=Plus/Plus
Query 210923 CTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAA 210982
||| ||||| ||||| ||||||| ||| || || ||||| |||| ||||| || |||||
Sbjct 3246 CTCCTTTTGAATGTTGTAATCCGAAAGAGTTCTACCATCCTCCAATTGCTTTCCAGCGAA 3305
Query 210983 GATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTT 211042
|| | ||||||||||| || || | || |||||||| ||||||||| || |||||
Sbjct 3306 AATCAATCGTTGTTGGTCGGGTGGGATGCCCTCCTTGTCTTGGATCTTTGTCTTGACGTT 3365
Query 211043 TTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTAC 211102
|| ||||| || || ||| ||||| | || || |||||||| || | |||||| ||
Sbjct 3366 ATCAATGGTATCTGACGATTCCACCTCTAACGTAATTGTCTTTCCAGTCAAAGTCTTAAC 3425
Query 211103 AAACACCTGCATT 211115
||| | ||||||
Sbjct 3426 AAAGATTTGCATT 3438
Score = 136 bits (150), Expect = 9e-27
Identities = 156/210 (74%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952
||||||||| || || | || | ||| || || || |||||||| || || | ||| ||
Sbjct 3672 ACGAAGTCTCAGAACCAAATGTAAAGTCGATTCCTTCTGGATGTTGTAGTCGGAAAGAGT 3731
Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012
| || || || || |||||||| |||||||| | |||||||| ||||| || | ||
Sbjct 3732 GCGGCCGTCCTCAAGTTGCTTGCCAGCGAAGATCAAACGTTGTTGATCAGGGGGGATACC 3791
Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072
||||| || || ||||| || || || ||||| || || || ||||||||| ||
Sbjct 3792 CTCCTTATCTTGAATCTTGGTCTTAACATTGTCGATAGTATCCGAAGATTCAACCTCAAG 3851
Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTAC 211102
|||||| ||||| || ||||||||||| ||
Sbjct 3852 AGTGATAGTCTTGCCGGTGAGAGTCTTGAC 3881
>seq5771
Length=11851
Score = 134 bits (148), Expect = 3e-26
Identities = 137/179 (77%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986
||||||||||||||||| | | || | |||||| || || ||||| || ||||||||
Sbjct 7519 TTTTGGATGTTATAATCAGACAAAGTGCGTCCATCCTCAAGTTGCTTTCCAGCGAAGATC 7578
Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046
| |||||||| || || |||| ||| |||||||| || ||||| || || || |||
Sbjct 7579 AAACGTTGTTGATCCGGGGGAATTCCCTCCTTGTCTTGAATCTTGGTCTTGACATTGTCG 7638
Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105
|||||||| ||| ||| ||||| || ||||| ||||| ||||| | ||||| || ||
Sbjct 7639 ATGGTGTCGGAGGATTCGACCTCAAGGGTGATGGTCTTACCCGTCAAGGTCTTGACGAA 7697
>seq4887
Length=16554
Score = 109 bits (120), Expect = 1e-18
Identities = 194/278 (70%), Gaps = 10/278 (4%)
Strand=Plus/Minus
Query 178093 GTTCTTTTGGTTGCTCTTTCTG---CAAATGGCATCTTTGTACGCAATGAAGGGCATTCC 178149
|||||||||||| |||||| || ||| ||||||||||| ||||| || ||||
Sbjct 11005 GTTCTTTTGGTTACTCTTTTTGTTGCAA---GCATCTTTGTAAAGCATGAAAGGGTTTCC 10949
Query 178150 CACCTCAGCTTGAGCCACGAGAATGTGATGCCAAAGCTCCTGGGCTCGGACAGTCTTTTT 178209
||||| || ||| | || ||| || |||||||| || || || |||||
Sbjct 10948 AGTCTCAGTCTGGGCCTCAAGGATGGAATACCAAAGCTTTTGAGCCTTGATGGTCTTACG 10889
Query 178210 GGCTTTTCCTTCATTCTCGTACTTTTTGTAGAGCTCCTCGAATTCCGGTCCATAGACATC 178269
|||| |||| ||||||| || ||||| |||||||||| |||||||||||
Sbjct 10888 ACCTTTACCTTGTCTCTCGTAACCTTCATAGAGAGCCTCGAATTCATCACCATAGACATC 10829
Query 178270 ATCGAGACCGGGAGCCTCATTGGGGCAGAAGAGACTCCACTGACCGT-CTTCCTTCA-CT 178327
| | | || ||| || || ||||| | ||| |||| | |||| ||| |||| |
Sbjct 10828 AGCCAAGCCTGGACATTCGTTAGGGCACATGAGTGTCCAGTCTCCGTTCTT--TTCAACA 10771
Query 178328 CGTTTCATGAAGAGGTCAGAGGTCCAGATGGCATAGAA 178365
|| ||||||||||| || | |||||| |||||||||
Sbjct 10770 CGCTTCATGAAGAGATCTGGAATCCAGAGGGCATAGAA 10733
>seq4603
Length=15718
Score = 86.0 bits (94), Expect = 1e-11
Identities = 122/172 (71%), Gaps = 0/172 (0%)
Strand=Plus/Plus
Query 139810 CCAAAGAAGCACGGAAGAGGAGGACAATCTGCTCTGCGTTTTGAAAGACTTCGAAAGGAA 139869
|||||||||||||| | || || ||||||||||| ||||| | | | ||||| |||||
Sbjct 4614 CCAAAGAAGCACGGTCGTGGTGGTCAATCTGCTCTCCGTTTCGCACGTCTTCGTGAGGAA 4673
Query 139870 AAGAGGCACAACTACTTGAGAAAAGTTGCAGAGAACGCAATACAGTGTTTTATCAAAGAC 139929
||| | ||||||||| | |||| ||||| || || |||| || |||| |
Sbjct 4674 AAGCGCCACAACTACGTTCGAAAGGTTGCTGAACTTGCGGTACAAAACTTCATCACTGCA 4733
Query 139930 AACAAGTGTTTTGTTTCTGGTATTGTTTTGGCAGGTTCCGCAGAGTTCAAGA 139981
||||| ||| |||||||| | || || || || || || |||||||
Sbjct 4734 GACAAGGTCAATGTGGCTGGTATTATCTTAGCTGGATCTGCCGATTTCAAGA 4785
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1159042914740925
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |