Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rutstroemia_20echinophila_20[genbank_20GCA_5F000812885.1_202014-12-
31] 7,345 sequences; 40,250,382 total letters
Query= NC_029997.1
Length=105667
Score E
Sequences producing significant alignments: (Bits) Value
seq5062 129 4e-25
seq894 100 2e-16
>seq5062
Length=19932
Score = 129 bits (142), Expect = 4e-25
Identities = 149/198 (75%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| ||||| || ||||||||||| ||||| ||||| || || || || ||| |
Sbjct 11304 ATGCAGATCTTCGTCAAGACCCTCACGGGTAAAACCATCACCCTAGAGGTCGAGTCCTCC 11245
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
|||||| | || ||| | ||||| || | | || || || || | || || |||||
Sbjct 11244 GACACTATCGATAATGTCAAAACCAAGA-TCCAGGATAAGGAGGGAATCCCACCTGATCA 11186
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
||| ||| |||| || |||||||| ||||| ||||| | |||||| | |||||||||
Sbjct 11185 ACAACGTCTAATCTTCGCCGGCAAGCAACTCGAAGATGGCCGCACTCTTTCCGATTACAA 11126
Query 23790 CATACAAAAAGAGTCCAC 23807
||| || || ||||| ||
Sbjct 11125 CATCCAGAAGGAGTCGAC 11108
>seq894
Length=6424
Score = 100 bits (110), Expect = 2e-16
Identities = 148/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||||||||| || || || || ||||| || |||||| | || ||||| || |
Sbjct 3665 ATGCAGATTTTCGTCAAGACTCTTACCGGAAAGACAATCACTTTGGAGGTTGAGTCATCT 3606
Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730
|| ||| | || | |||| || ||| ||||| ||||| | || || ||||||
Sbjct 3605 GATACTATCGACAACGTAAAGAGCAAGATTCAAGACAAGGAAGGCATTCCACCTGATCAA 3546
Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790
|| ||| | || || || || || || |||| || | || || | || ||||||
Sbjct 3545 CAACGTCTCATCTTCGCTGGTAAGCAGTTGGAGGATGGCCGTACCCTGTCGGACTACAAC 3486
Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTT 23820
|| ||||| ||||| || |||||||| |||
Sbjct 3485 ATTCAAAAGGAGTCGACTTTACATTTGGTT 3456
Score = 86.0 bits (94), Expect = 4e-12
Identities = 126/176 (72%), Gaps = 2/176 (1%)
Strand=Plus/Minus
Query 23633 TCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTGA-AATATTAAAA 23691
|||| || || || ||||| || || ||||| || | |||||| | || || | || |
Sbjct 4155 TCACCGGCAAGACCATCACCCTTGAGGTTGAATCTTCCGACACTATCGACAACGTCAAGA 4096
Query 23692 CAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGC 23751
| || | | || || || ||| | || || || ||||||||||| || ||||| |||
Sbjct 4095 CTAAGA-TCCAGGATAAGGAGGGTATTCCTCCTGACCAACAGCGTTTGATCTTTGCTGGC 4037
Query 23752 AAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCAC 23807
|| ||||| || || | || ||||| |||| |||||||| || || ||||| ||
Sbjct 4036 AAGCAACTCGAGGATGGTCGTACTTTGAGCGACTACAACATCCAGAAGGAGTCTAC 3981
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 337979342331260
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |