Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20echinophila_20[genbank_20GCA_5F000812885.1_202014-12- 31] 7,345 sequences; 40,250,382 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq5062 129 4e-25 seq894 100 2e-16 >seq5062 Length=19932 Score = 129 bits (142), Expect = 4e-25 Identities = 149/198 (75%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||||||||| ||||| ||||| || || || || ||| | Sbjct 11304 ATGCAGATCTTCGTCAAGACCCTCACGGGTAAAACCATCACCCTAGAGGTCGAGTCCTCC 11245 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| | || ||| | ||||| || | | || || || || | || || ||||| Sbjct 11244 GACACTATCGATAATGTCAAAACCAAGA-TCCAGGATAAGGAGGGAATCCCACCTGATCA 11186 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| ||| |||| || |||||||| ||||| ||||| | |||||| | ||||||||| Sbjct 11185 ACAACGTCTAATCTTCGCCGGCAAGCAACTCGAAGATGGCCGCACTCTTTCCGATTACAA 11126 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || ||||| || Sbjct 11125 CATCCAGAAGGAGTCGAC 11108 >seq894 Length=6424 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || || || || ||||| || |||||| | || ||||| || | Sbjct 3665 ATGCAGATTTTCGTCAAGACTCTTACCGGAAAGACAATCACTTTGGAGGTTGAGTCATCT 3606 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || ||| | || | |||| || ||| ||||| ||||| | || || |||||| Sbjct 3605 GATACTATCGACAACGTAAAGAGCAAGATTCAAGACAAGGAAGGCATTCCACCTGATCAA 3546 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || ||| | || || || || || || |||| || | || || | || |||||| Sbjct 3545 CAACGTCTCATCTTCGCTGGTAAGCAGTTGGAGGATGGCCGTACCCTGTCGGACTACAAC 3486 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTT 23820 || ||||| ||||| || |||||||| ||| Sbjct 3485 ATTCAAAAGGAGTCGACTTTACATTTGGTT 3456 Score = 86.0 bits (94), Expect = 4e-12 Identities = 126/176 (72%), Gaps = 2/176 (1%) Strand=Plus/Minus Query 23633 TCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTGA-AATATTAAAA 23691 |||| || || || ||||| || || ||||| || | |||||| | || || | || | Sbjct 4155 TCACCGGCAAGACCATCACCCTTGAGGTTGAATCTTCCGACACTATCGACAACGTCAAGA 4096 Query 23692 CAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGC 23751 | || | | || || || ||| | || || || ||||||||||| || ||||| ||| Sbjct 4095 CTAAGA-TCCAGGATAAGGAGGGTATTCCTCCTGACCAACAGCGTTTGATCTTTGCTGGC 4037 Query 23752 AAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCAC 23807 || ||||| || || | || ||||| |||| |||||||| || || ||||| || Sbjct 4036 AAGCAACTCGAGGATGGTCGTACTTTGAGCGACTACAACATCCAGAAGGAGTCTAC 3981 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337979342331260