Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20echinophila_20[genbank_20GCA_5F000812885.1_202014-12- 31] 7,345 sequences; 40,250,382 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq4887 369 5e-97 >seq4887 Length=16554 Score = 369 bits (408), Expect = 5e-97 Identities = 1335/2070 (64%), Gaps = 34/2070 (2%) Strand=Plus/Minus Query 76770 TTCTT-ATCCAATGTAAACTGAATTGGAGAAGATGCGGGTTTTGTACGTAGATAGTACAT 76828 ||||| ||| | || || |||||||| | || || | | ||||| ||||||||||| Sbjct 12016 TTCTTGATCAACGGTGAATTGAATTGGTGCGGAAGCAGCCATAGTACGGAGATAGTACAT 11957 Query 76829 ACCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACT 76888 ||||| || ||||| | ||||||| ||||||||| || | ||| | Sbjct 11956 TCCAGTCTTGAGACCTAATTTCCATCCAGCAAAATGCATGGAAGTGATCTTGCCCATTGT 11897 Query 76889 AGGATCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGC 76948 ||| || || || || ||||| || ||| ||||||||||||||| || | || || Sbjct 11896 AGGGTCCTTCATGTGGATGTTCATTGATTGAGATTGATCGATGAAAGCACCACGGTCTGC 11837 Query 76949 CGCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGAT 77008 ||||| | | |||| | ||||| |||||||||| ||| ||| | | |||| Sbjct 11836 GGCCATCTGAACAATGTTTCGTTGAGAGATTTCCCAAACAGTCTTGTAGAGAGCCTTGAG 11777 Query 77009 ATCATCTGGAAGGTTTGTA---TTTTGAATGGAACCACCATCTGATATAATTGTATTCTT 77065 ||| |||| | ||| | | |||||||| || ||||| || | || || ||||| Sbjct 11776 TTCAGCTGGGATGTTGGGAATGTTTTGAATAGATCCACCGTCAGCGATGATGCGGTTCTT 11717 Query 77066 TATATCATCATTCCACAATTTCCTCTCTGTTAAAACTCTAAGGAGATGAGGATTAACTAT 77125 || | ||| ||| | | | | || ||| | | || || || || || | Sbjct 11716 CATGTTGTCAGACCAAAGTCCCATGTCGACCAAATCCTTGAGAAGCCATGGGTTGACAAC 11657 Query 77126 TTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGA 77185 ||| || ||||| | || || | ||| | || || || || ||||| || | | | Sbjct 11656 TTGGAACTCTCCGGCCAGCACACGACGGGAATAGATGTTGGAAGTGTATGGCTCGAAACA 11597 Query 77186 TTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACT 77245 ||| ||| || | |||||||| ||| |||||||||||||| || || | ||||| Sbjct 11596 TTCGTTGAAACCGAGAATTTGAGATGTACTGGCAGTTGGCATAGGAGCAACAAGCAAACT 11537 Query 77246 ATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGA 77305 || | | ||||||| |||| | || || | ||||||||| ||||||| Sbjct 11536 GTTGCGAATACCATGTTGCTTGATAGATTGCTTGAGGCTATCCCAATCCCAGAGATCTGT 11477 Query 77306 AGGTACAACATCCCAAAGATCGTATTGTAGAATTCCGTTACTAGCATATGATCCATTATA 77365 ||| |||| |||| | ||| ||||| || || || | | || || | || Sbjct 11476 AGGAGTAACACCCCACATATCATATTGAAGTTCACCCTTGGAAACTGGAGAACCTTCGTA 11417 Query 77366 TGTTTCATAAGGTCCTT-CTGTTTCAGCTAGTTCACAACTCGCTTCCAATGCTCCGTAAT 77424 || ||||| || || || || || | | | | || ||| || |||| | Sbjct 11416 GGTCTCATATGGGCCCAACTCCTTG-GCAATCTGAACAGACGAAGTCAAGGCACCGTGGT 11358 Query 77425 AAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTATCAAACGGATAAT 77484 | || || |||||||||| | || |||| || || ||| ||| || || || Sbjct 11357 AGATGGTCTCGAAAATCTGGATGTTAAGATGTTTGGCCTCAGGTGAATCGAATGGCAAAC 11298 Query 77485 GTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCTATGTCTCT 77544 | | | | |||||||| || | |||||||| |||| | ||||||||| || | Sbjct 11297 GGAGAGCCAGGAAGGCATCAGCAAGACCCTGAACACCAACAGCAATAGGTCGGTGACGGA 11238 Query 77545 TATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAATGTCTATAATTTTATTGAGAT 77604 || || |||||||||| | |||||| || || ||||| ||||| || || | | Sbjct 11237 AGTTACTCTTTCTAGCTTCTGGGACAGGATAGTAGTTGATGTCAATAATCTTGTTCAAGT 11178 Query 77605 TTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAAAATCAAATCTTCCATCTA--- 77661 |||| ||||| |||| ||| || || | || || | |||||| | |||| || Sbjct 11177 TTCTGACAACAACTTGAACGACCTCATGAAGCTTTTGGAAATCATAAGTTCCCTCAGCCA 11118 Query 77662 ---TAACAAACATGTTCAAAGCTATAGATGCTAGATTACAAACTGCTACCTCATTAGCGT 77718 | ||||| | | ||| ||||| || | ||||| || ||||||| || Sbjct 11117 TGTTGACAAAGGTTGGGAGAGCAATAGAAGCCAAGTTACAGCAAGCAACCTCATC--CGG 11060 Query 77719 TG--GCATATTGTATTATCTCGGTACATAGATTA---CTACATTTGATAGTGCCCAGATT 77773 || | |||| | || || || || | || |||| ||| ||||| || || Sbjct 11059 TGCAGAGTATTCGACGATTTCTGTGCACAAGTTGGAGCTACG---GATTGTGCCGAGGTT 11003 Query 77774 TTGTTGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTC 77833 | |||||| |||||||| ||||| | || || ||||| || || || | || || || Sbjct 11002 CTTTTGGTTACTCTTTTTGTTGCAAGCATCTTTGTAAAGCATGAAAGGGTTTCCAGTCTC 10943 Query 77834 AATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTTTTAT---CATA-GATTTGT 77889 | |||| | || | || || | ||| | | ||| || || | || || | | Sbjct 10942 AGTCTGGGCCTCAAGGATGGAATACCAAAGCTTTTGAGCCTTGATGGTCTTACGACCTTT 10883 Query 77890 ATCGCCTCTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCAT 77949 | | |||||| | | || | || | |||| || |||||||| || | |||||| Sbjct 10882 ACCTTGTCTCTCGTA-ACCTTCA-TAGAGAGCC--TCGAATTCATCACCATAGACATCAG 10827 Query 77950 CCAATCCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTT 78009 |||| || || ||||| || |||||||| | || |||||| || | | | ||| || | Sbjct 10826 CCAAGCCTGGACATTCGTTAGGGCACATGAGTGTCCAGTCTCCGTTCTTTTCAACACGCT 10767 Query 78010 TCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCAT 78069 |||| |||||||| || ||||| || ||| || ||||| || | |||| ||| || | Sbjct 10766 TCATGAAGAGATCTGGAATCCAGAGGGCATAGAAGAGATCGCGTGCTCTAACTTCCTCTT 10707 Query 78070 TTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGAT 78129 | || |||||| || || | ||||| | | ||| | |||||||||||| || | Sbjct 10706 TGCCGTGGTTCTTTCGGAGGTCCAAGAACTCAAAGACATCCGCATGCCATGGTTCAAGGT 10647 Query 78130 ATATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTAT 78189 | | || | | ||||| || || ||||| || || || | |||||| |||||||| | Sbjct 10646 AAACGGCAAATGCACCAGGGCGCTTGTTACCACCTTGGTCGACATATCTAGCGGTGTTGT 10587 Query 78190 TATAAACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAAC 78249 | |||||| | ||| |||| ||||||||||| | || ||||| || | ||| || Sbjct 10586 TGAAAACTCGAAGCATAGGAACGATACCGTTAGAGTTACCGTTTGTGCCTGCAATGTAGG 10527 Query 78250 TTCCACTTGCGCGAATATTACTAATGGATATCCCTATTCCTCCTGCCATCTTAGATATTA 78309 ||| | || || || | ||| | || || || || || |||| || || | Sbjct 10526 CACCAGTAGCACGGATTCTGTGGATGTTGAGACCAATACCACCAGCGTTCTTTGAAATCA 10467 Query 78310 GAGCGCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATGTTAAGAA 78369 ||| ||| ||||| ||||| |||||||| || ||||| || ||| |||| | || || Sbjct 10466 TAGCACAAATCTTCAAAGTATCATAGATACCATCAATACTATCCTCCTTCATATCAATAA 10407 Query 78370 GAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCAT 78429 | || || || | ||| || ||| || ||| || | ||| ||||| || | Sbjct 10406 GGAAGCATGATGAAAGCTGAGCCTGTGGAGTACCCGCAGAGAAGAGTGTTGGAGAAGCGT 10347 Query 78430 GCGTAAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTATGTC-CCAT 78488 | ||||| |||| | || | | ||||||||||| || || ||| || || || Sbjct 10346 GTGTAAAGTATTTGTTGGACATCAAGTTGTATGTTTCGATGGCACTTTCAATATCATCAC 10287 Query 78489 TGATGAATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTTATTA 78548 | ||||| || || || |||||||| | ||| || || || | |||| | || Sbjct 10286 CG-TGAATACCAACGGCAACACGCATGATCATTTGTTGTGGACGTTCAGCAACATTTCCG 10228 Query 78549 TTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAG 78608 | | | | ||||||| || | ||| || || || || || | ||| |||| Sbjct 10227 TCGAGACGGAGGAGGTATGATCGCTCAAGAGTCTTGAATCCGAAGTATTGGTAGTTAAAG 10168 Query 78609 TCTCTCTCGTAAATAATAACAGAATTTAGTTTATCTTTGTATTTGGTAACAATATCCATG 78668 ||||| || |||| || |||| || |||| | | | | | |||| | || | | Sbjct 10167 TCTCTGTCATAAACGATTGCAGAGTTGAGTTCTGCCTCATGTCTCATAAC-ACATTCGTA 10109 Query 78669 ACAGTAGTTG-AAATAATAGGAGATCGTACACCATTTTTAGGATTAACATAGTTAAATAA 78727 | ||| ||| ||||||||| |||||||| ||||| |||| ||| Sbjct 10108 TGTTTCCTTGCTAATCATAGGAGATTTGGTGCCATTTTTGGGATTCGTGTAGTGGTATAG 10049 Query 78728 ATCTTCCATTACATCACTAAATAGtttttttGTTTCCTTGTGTAGATTAGATACAGCTAT 78787 || || |||| ||| | || || |||| ||||| ||||| || || || || Sbjct 10048 GTCGCTAATGACATGGGAGAATTGCTTCTTGGTTTGTTTGTGAAGATTGGAGACTGCAAT 9989 Query 78788 TCTTGCAGCTAGAATAGCATAATCAGGATG 78817 | ||||||||||| ||||| || ||||| Sbjct 9988 ACGAGCAGCTAGAATGGCATAGTCGGGATG 9959 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694605020720800