Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rutstroemia_20echinophila_20[genbank_20GCA_5F000812885.1_202014-12-
31] 7,345 sequences; 40,250,382 total letters
Query= NC_031033.1
Length=217124
Score E
Sequences producing significant alignments: (Bits) Value
seq4887 369 5e-97
>seq4887
Length=16554
Score = 369 bits (408), Expect = 5e-97
Identities = 1335/2070 (64%), Gaps = 34/2070 (2%)
Strand=Plus/Minus
Query 76770 TTCTT-ATCCAATGTAAACTGAATTGGAGAAGATGCGGGTTTTGTACGTAGATAGTACAT 76828
||||| ||| | || || |||||||| | || || | | ||||| |||||||||||
Sbjct 12016 TTCTTGATCAACGGTGAATTGAATTGGTGCGGAAGCAGCCATAGTACGGAGATAGTACAT 11957
Query 76829 ACCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACT 76888
||||| || ||||| | ||||||| ||||||||| || | ||| |
Sbjct 11956 TCCAGTCTTGAGACCTAATTTCCATCCAGCAAAATGCATGGAAGTGATCTTGCCCATTGT 11897
Query 76889 AGGATCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGC 76948
||| || || || || ||||| || ||| ||||||||||||||| || | || ||
Sbjct 11896 AGGGTCCTTCATGTGGATGTTCATTGATTGAGATTGATCGATGAAAGCACCACGGTCTGC 11837
Query 76949 CGCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGAT 77008
||||| | | |||| | ||||| |||||||||| ||| ||| | | ||||
Sbjct 11836 GGCCATCTGAACAATGTTTCGTTGAGAGATTTCCCAAACAGTCTTGTAGAGAGCCTTGAG 11777
Query 77009 ATCATCTGGAAGGTTTGTA---TTTTGAATGGAACCACCATCTGATATAATTGTATTCTT 77065
||| |||| | ||| | | |||||||| || ||||| || | || || |||||
Sbjct 11776 TTCAGCTGGGATGTTGGGAATGTTTTGAATAGATCCACCGTCAGCGATGATGCGGTTCTT 11717
Query 77066 TATATCATCATTCCACAATTTCCTCTCTGTTAAAACTCTAAGGAGATGAGGATTAACTAT 77125
|| | ||| ||| | | | | || ||| | | || || || || || |
Sbjct 11716 CATGTTGTCAGACCAAAGTCCCATGTCGACCAAATCCTTGAGAAGCCATGGGTTGACAAC 11657
Query 77126 TTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGA 77185
||| || ||||| | || || | ||| | || || || || ||||| || | | |
Sbjct 11656 TTGGAACTCTCCGGCCAGCACACGACGGGAATAGATGTTGGAAGTGTATGGCTCGAAACA 11597
Query 77186 TTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACT 77245
||| ||| || | |||||||| ||| |||||||||||||| || || | |||||
Sbjct 11596 TTCGTTGAAACCGAGAATTTGAGATGTACTGGCAGTTGGCATAGGAGCAACAAGCAAACT 11537
Query 77246 ATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGA 77305
|| | | ||||||| |||| | || || | ||||||||| |||||||
Sbjct 11536 GTTGCGAATACCATGTTGCTTGATAGATTGCTTGAGGCTATCCCAATCCCAGAGATCTGT 11477
Query 77306 AGGTACAACATCCCAAAGATCGTATTGTAGAATTCCGTTACTAGCATATGATCCATTATA 77365
||| |||| |||| | ||| ||||| || || || | | || || | ||
Sbjct 11476 AGGAGTAACACCCCACATATCATATTGAAGTTCACCCTTGGAAACTGGAGAACCTTCGTA 11417
Query 77366 TGTTTCATAAGGTCCTT-CTGTTTCAGCTAGTTCACAACTCGCTTCCAATGCTCCGTAAT 77424
|| ||||| || || || || || | | | | || ||| || |||| |
Sbjct 11416 GGTCTCATATGGGCCCAACTCCTTG-GCAATCTGAACAGACGAAGTCAAGGCACCGTGGT 11358
Query 77425 AAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTATCAAACGGATAAT 77484
| || || |||||||||| | || |||| || || ||| ||| || || ||
Sbjct 11357 AGATGGTCTCGAAAATCTGGATGTTAAGATGTTTGGCCTCAGGTGAATCGAATGGCAAAC 11298
Query 77485 GTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCTATGTCTCT 77544
| | | | |||||||| || | |||||||| |||| | ||||||||| || |
Sbjct 11297 GGAGAGCCAGGAAGGCATCAGCAAGACCCTGAACACCAACAGCAATAGGTCGGTGACGGA 11238
Query 77545 TATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAATGTCTATAATTTTATTGAGAT 77604
|| || |||||||||| | |||||| || || ||||| ||||| || || | |
Sbjct 11237 AGTTACTCTTTCTAGCTTCTGGGACAGGATAGTAGTTGATGTCAATAATCTTGTTCAAGT 11178
Query 77605 TTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAAAATCAAATCTTCCATCTA--- 77661
|||| ||||| |||| ||| || || | || || | |||||| | |||| ||
Sbjct 11177 TTCTGACAACAACTTGAACGACCTCATGAAGCTTTTGGAAATCATAAGTTCCCTCAGCCA 11118
Query 77662 ---TAACAAACATGTTCAAAGCTATAGATGCTAGATTACAAACTGCTACCTCATTAGCGT 77718
| ||||| | | ||| ||||| || | ||||| || ||||||| ||
Sbjct 11117 TGTTGACAAAGGTTGGGAGAGCAATAGAAGCCAAGTTACAGCAAGCAACCTCATC--CGG 11060
Query 77719 TG--GCATATTGTATTATCTCGGTACATAGATTA---CTACATTTGATAGTGCCCAGATT 77773
|| | |||| | || || || || | || |||| ||| ||||| || ||
Sbjct 11059 TGCAGAGTATTCGACGATTTCTGTGCACAAGTTGGAGCTACG---GATTGTGCCGAGGTT 11003
Query 77774 TTGTTGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTC 77833
| |||||| |||||||| ||||| | || || ||||| || || || | || || ||
Sbjct 11002 CTTTTGGTTACTCTTTTTGTTGCAAGCATCTTTGTAAAGCATGAAAGGGTTTCCAGTCTC 10943
Query 77834 AATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTTTTAT---CATA-GATTTGT 77889
| |||| | || | || || | ||| | | ||| || || | || || | |
Sbjct 10942 AGTCTGGGCCTCAAGGATGGAATACCAAAGCTTTTGAGCCTTGATGGTCTTACGACCTTT 10883
Query 77890 ATCGCCTCTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCAT 77949
| | |||||| | | || | || | |||| || |||||||| || | ||||||
Sbjct 10882 ACCTTGTCTCTCGTA-ACCTTCA-TAGAGAGCC--TCGAATTCATCACCATAGACATCAG 10827
Query 77950 CCAATCCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTT 78009
|||| || || ||||| || |||||||| | || |||||| || | | | ||| || |
Sbjct 10826 CCAAGCCTGGACATTCGTTAGGGCACATGAGTGTCCAGTCTCCGTTCTTTTCAACACGCT 10767
Query 78010 TCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCAT 78069
|||| |||||||| || ||||| || ||| || ||||| || | |||| ||| || |
Sbjct 10766 TCATGAAGAGATCTGGAATCCAGAGGGCATAGAAGAGATCGCGTGCTCTAACTTCCTCTT 10707
Query 78070 TTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGAT 78129
| || |||||| || || | ||||| | | ||| | |||||||||||| || |
Sbjct 10706 TGCCGTGGTTCTTTCGGAGGTCCAAGAACTCAAAGACATCCGCATGCCATGGTTCAAGGT 10647
Query 78130 ATATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTAT 78189
| | || | | ||||| || || ||||| || || || | |||||| |||||||| |
Sbjct 10646 AAACGGCAAATGCACCAGGGCGCTTGTTACCACCTTGGTCGACATATCTAGCGGTGTTGT 10587
Query 78190 TATAAACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAAC 78249
| |||||| | ||| |||| ||||||||||| | || ||||| || | ||| ||
Sbjct 10586 TGAAAACTCGAAGCATAGGAACGATACCGTTAGAGTTACCGTTTGTGCCTGCAATGTAGG 10527
Query 78250 TTCCACTTGCGCGAATATTACTAATGGATATCCCTATTCCTCCTGCCATCTTAGATATTA 78309
||| | || || || | ||| | || || || || || |||| || || |
Sbjct 10526 CACCAGTAGCACGGATTCTGTGGATGTTGAGACCAATACCACCAGCGTTCTTTGAAATCA 10467
Query 78310 GAGCGCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATGTTAAGAA 78369
||| ||| ||||| ||||| |||||||| || ||||| || ||| |||| | || ||
Sbjct 10466 TAGCACAAATCTTCAAAGTATCATAGATACCATCAATACTATCCTCCTTCATATCAATAA 10407
Query 78370 GAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCAT 78429
| || || || | ||| || ||| || ||| || | ||| ||||| || |
Sbjct 10406 GGAAGCATGATGAAAGCTGAGCCTGTGGAGTACCCGCAGAGAAGAGTGTTGGAGAAGCGT 10347
Query 78430 GCGTAAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTATGTC-CCAT 78488
| ||||| |||| | || | | ||||||||||| || || ||| || || ||
Sbjct 10346 GTGTAAAGTATTTGTTGGACATCAAGTTGTATGTTTCGATGGCACTTTCAATATCATCAC 10287
Query 78489 TGATGAATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTTATTA 78548
| ||||| || || || |||||||| | ||| || || || | |||| | ||
Sbjct 10286 CG-TGAATACCAACGGCAACACGCATGATCATTTGTTGTGGACGTTCAGCAACATTTCCG 10228
Query 78549 TTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAG 78608
| | | | ||||||| || | ||| || || || || || | ||| ||||
Sbjct 10227 TCGAGACGGAGGAGGTATGATCGCTCAAGAGTCTTGAATCCGAAGTATTGGTAGTTAAAG 10168
Query 78609 TCTCTCTCGTAAATAATAACAGAATTTAGTTTATCTTTGTATTTGGTAACAATATCCATG 78668
||||| || |||| || |||| || |||| | | | | | |||| | || | |
Sbjct 10167 TCTCTGTCATAAACGATTGCAGAGTTGAGTTCTGCCTCATGTCTCATAAC-ACATTCGTA 10109
Query 78669 ACAGTAGTTG-AAATAATAGGAGATCGTACACCATTTTTAGGATTAACATAGTTAAATAA 78727
| ||| ||| ||||||||| |||||||| ||||| |||| |||
Sbjct 10108 TGTTTCCTTGCTAATCATAGGAGATTTGGTGCCATTTTTGGGATTCGTGTAGTGGTATAG 10049
Query 78728 ATCTTCCATTACATCACTAAATAGtttttttGTTTCCTTGTGTAGATTAGATACAGCTAT 78787
|| || |||| ||| | || || |||| ||||| ||||| || || || ||
Sbjct 10048 GTCGCTAATGACATGGGAGAATTGCTTCTTGGTTTGTTTGTGAAGATTGGAGACTGCAAT 9989
Query 78788 TCTTGCAGCTAGAATAGCATAATCAGGATG 78817
| ||||||||||| ||||| || |||||
Sbjct 9988 ACGAGCAGCTAGAATGGCATAGTCGGGATG 9959
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 694605020720800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |