Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20echinophila_20[genbank_20GCA_5F000812885.1_202014-12- 31] 7,345 sequences; 40,250,382 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq4887 356 3e-93 seq4745 136 6e-27 >seq4887 Length=16554 Score = 356 bits (394), Expect = 3e-93 Identities = 1334/2075 (64%), Gaps = 44/2075 (2%) Strand=Plus/Minus Query 75365 TTCTTATCCAACG-TGAACTGAATGGGAGAGGATGCTGGTTTTGTACGTAGATAGTACAT 75423 ||||| ||||| |||| ||||| || | ||| || | | ||||| ||||||||||| Sbjct 12016 TTCTTGATCAACGGTGAATTGAATTGGTGCGGAAGCAGCCATAGTACGGAGATAGTACAT 11957 Query 75424 ACCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACT 75483 ||||| || ||||| | ||||||| ||||||||| || | ||| | Sbjct 11956 TCCAGTCTTGAGACCTAATTTCCATCCAGCAAAATGCATGGAAGTGATCTTGCCCATTGT 11897 Query 75484 CGGATCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGC 75543 || || || || || ||||| || ||| ||||||||||||||| || | || || Sbjct 11896 AGGGTCCTTCATGTGGATGTTCATTGATTGAGATTGATCGATGAAAGCACCACGGTCTGC 11837 Query 75544 CGCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGAT 75603 ||||| | | |||| | ||||| |||||||||| ||| ||| | | |||| Sbjct 11836 GGCCATCTGAACAATGTTTCGTTGAGAGATTTCCCAAACAGTCTTGTAGAGAGCCTTGAG 11777 Query 75604 ATCATCTGGAAGATTTGTA---TTTTGAATGGATCCGCCATCAGATATAATTGTATTCTT 75660 ||| |||| | || | | |||||||| ||||| || |||| || || ||||| Sbjct 11776 TTCAGCTGGGATGTTGGGAATGTTTTGAATAGATCCACCGTCAGCGATGATGCGGTTCTT 11717 Query 75661 GATCTCATCATTCCACAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACAAT 75720 || | ||| ||| | | | ||| ||| | | || || || || |||| Sbjct 11716 CATGTTGTCAGACCAAAGTCCCATGTCGACCAAATCCTTGAGAAGCCATGGGTTGACAAC 11657 Query 75721 TTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGA 75780 ||| || ||||| | || || | || | || || || || ||||| || | | | Sbjct 11656 TTGGAACTCTCCGGCCAGCACACGACGGGAATAGATGTTGGAAGTGTATGGCTCGAAACA 11597 Query 75781 TTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACT 75840 ||| ||| || | |||||||| || ||||| |||||||| || || | ||||| Sbjct 11596 TTCGTTGAAACCGAGAATTTGAGATGTACTGGCAGTTGGCATAGGAGCAACAAGCAAACT 11537 Query 75841 ATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGA 75900 || | | ||||||| |||| | || || | ||||||||| ||||||| Sbjct 11536 GTTGCGAATACCATGTTGCTTGATAGATTGCTTGAGGCTATCCCAATCCCAGAGATCTGT 11477 Query 75901 TGGTACAACATCCCAGAGATCGTATTGTAGAATTCCGTTGCTAGCATATGATCCATTATA 75960 || |||| |||| | ||| ||||| || || ||| | | || || | || Sbjct 11476 AGGAGTAACACCCCACATATCATATTGAAGTTCACCCTTGGAAACTGGAGAACCTTCGTA 11417 Query 75961 TGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACT--CGCCTCTAACGCACCGTAA 76018 || || || | || || | || | || ||| || || ||||||| Sbjct 11416 GGTCTCATATGGGCCCAACTCCTTGGCAA--TCTGAACAGACGAAGTCAAGGCACCGTGG 11359 Query 76019 TAAATTGTTTCGAAAATCTTCTTATTAAGATCTTGCGCTTCAAGACTATCAAAAGGATAA 76078 || || || |||||||||| | ||||||| || || ||| | ||| || || || Sbjct 11358 TAGATGGTCTCGAAAATCTGGATGTTAAGATGTTTGGCCTCAGGTGAATCGAATGGCAAA 11299 Query 76079 TGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATGTCTC 76138 | | | | || ||||| || || |||||||| |||| | ||||||||| || | Sbjct 11298 CGGAGAGCCAGGAAGGCATCAGCAAGACCCTGAACACCAACAGCAATAGGTCGGTGACGG 11239 Query 76139 ---TTATTGGAAATTTC-AGCTTCTGGAATAGGGTAATAATTAATATCTATAATTTTATT 76194 ||| | |||| ||||||||| | ||| || || || || || ||||| || || Sbjct 11238 AAGTTACTC----TTTCTAGCTTCTGGGACAGGATAGTAGTTGATGTCAATAATCTTGTT 11183 Query 76195 GAGATTTCTGACAACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATTTTCCATC 76254 | ||||||||||| |||| ||| || || | || || | |||||| | |||| || Sbjct 11182 CAAGTTTCTGACAACAACTTGAACGACCTCATGAAGCTTTTGGAAATCATAAGTTCCCTC 11123 Query 76255 TATCA------CAAACATATTAAGAGCTATAGATGCTAGATTACAAACGGCTACCTCATT 76308 || |||| | ||||| ||||| || | ||||| || ||||||| Sbjct 11122 AGCCATGTTGACAAAGGTTGGGAGAGCAATAGAAGCCAAGTTACAGCAAGCAACCTCATC 11063 Query 76309 AGCATTGGCATATTGTATTATCTCCGTGCATAGATTA---CTACACTTGATAGTTCCAAG 76365 | | |||| | || || ||||| | || |||| ||| || || || Sbjct 11062 CGGTGCAGAGTATTCGACGATTTCTGTGCACAAGTTGGAGCTACG---GATTGTGCCGAG 11006 Query 76366 ATTTTGTTGGTTGCTCTTTTTGTTACATGAGTCCTTATAAAGAACAAACGGAGTTCCAGT 76425 || | |||||| ||||||||||| || | || || ||||| | || || ||||||| Sbjct 11005 GTTCTTTTGGTTACTCTTTTTGTTGCAAGCATCTTTGTAAAGCATGAAAGGGTTTCCAGT 10946 Query 76426 TTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTTTTATTATA----GATT 76481 ||| |||| | || | || || | ||| | | ||| || || | || Sbjct 10945 CTCAGTCTGGGCCTCAAGGATGGAATACCAAAGCTTTTGAGCCTTGATGGTCTTACGACC 10886 Query 76482 TGTATCGCTTCTCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACAT 76541 | || | |||||| | | || || | | || || |||||||| || | |||| Sbjct 10885 TTTACCTTGTCTCTCGTA-ACCTTCA-TAGAGAGCC--TCGAATTCATCACCATAGACAT 10830 Query 76542 CATCCAAACCAGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCC 76601 || |||| || |||||||| || || ||||| | || ||| || || | | | ||| | Sbjct 10829 CAGCCAAGCCTGGACATTCGTTAGGGCACATGAGTGTCCAGTCTCCGTTCTTTTCAACAC 10770 Query 76602 GTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTT 76661 | ||||| |||||||| || ||||| || ||| || ||||| || | |||| ||| | Sbjct 10769 GCTTCATGAAGAGATCTGGAATCCAGAGGGCATAGAAGAGATCGCGTGCTCTAACTTCCT 10710 Query 76662 CATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTA 76721 | || || |||||| || || | |||||| | | ||| | |||||||||||| | Sbjct 10709 CTTTGCCGTGGTTCTTTCGGAGGTCCAAGAACTCAAAGACATCCGCATGCCATGGTTCAA 10650 Query 76722 GATATATCGCCATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGT 76781 | || | || | |||| || || || ||||| || || || | |||||| || |||| Sbjct 10649 GGTAAACGGCAAATGCACCAGGGCGCTTGTTACCACCTTGGTCGACATATCTAGCGGTGT 10590 Query 76782 TATTATAAACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATAT 76841 | || |||||| | ||| |||| || |||||||| |||| ||||| || | ||| | Sbjct 10589 TGTTGAAAACTCGAAGCATAGGAACGATACCGTTAGAGTTACCGTTTGTGCCTGCAATGT 10530 Query 76842 AACTTCCACATGCACGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGA 76901 | ||| ||||| || | || || || || || || || | || || | Sbjct 10529 AGGCACCAGTAGCACGGATTCTGTGGATGTTGAGACCAATACCACCAGCGTTCTTTGAAA 10470 Query 76902 TTAGAGCACAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGTTAA 76961 | | |||||| ||||| || |||||||| || || |||||||| ||| |||| | || Sbjct 10469 TCATAGCACAAATCTTCAAAGTATCATAGATACCATCAATACTATCCTCCTTCATATCAA 10410 Query 76962 GAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATG 77021 ||| || || || | ||| || ||| || ||| || | ||| ||||| | Sbjct 10409 TAAGGAAGCATGATGAAAGCTGAGCCTGTGGAGTACCCGCAGAGAAGAGTGTTGGAGAAG 10350 Query 77022 CATGAGTGAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCTTCTATATC-C 77080 | || || || |||| | || | | ||||||||||| || | ||| ||||| Sbjct 10349 CGTGTGTAAAGTATTTGTTGGACATCAAGTTGTATGTTTCGATGGCACTTTCAATATCAT 10290 Query 77081 CATTGATGAATTCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTCTTA 77140 || | ||||| || || || |||||||| | ||| || || || ||||| || || Sbjct 10289 CACCG-TGAATACCAACGGCAACACGCATGATCATTTGTTGTGGACGTTCAGCAACATTT 10231 Query 77141 TTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAA 77200 | | | | ||||||| || | ||| || || || || || | ||| | Sbjct 10230 CCGTCGAGACGGAGGAGGTATGATCGCTCAAGAGTCTTGAATCCGAAGTATTGGTAGTTA 10171 Query 77201 AAGTCTCTTTCGTAAATAATAACCGAATTTAGTTTGTCCTTATATTTGGTAACA-ATATC 77259 |||||||| || |||| || | || || |||| ||| || | | ||||| || Sbjct 10170 AAGTCTCTGTCATAAACGATTGCAGAGTTGAGTTCTGCCTCATGTCTCATAACACATTCG 10111 Query 77260 CATG--ACAGTGGTAGAAATAATTGGAGATCGTATTCCATTTTTAGGATTAACATAGTTA 77317 ||| | || | ||| || |||||| | |||||||| ||||| |||| Sbjct 10110 TATGTTTCCTTGCT---AATCATAGGAGATTTGGTGCCATTTTTGGGATTCGTGTAGTGG 10054 Query 77318 AATAAGTCTTCCATTACGTCGCTAAATAGtttttttGTTTCCTTGTGTAGATTCGATACG 77377 ||| ||| || || | | ||| | || || |||| ||||| ||||| || || Sbjct 10053 TATAGGTCGCTAATGACATGGGAGAATTGCTTCTTGGTTTGTTTGTGAAGATTGGAGACT 9994 Query 77378 GCTATTCTAGCAGCTAGAATTGCATAGTCAGGATG 77412 || || | |||||||||||| |||||||| ||||| Sbjct 9993 GCAATACGAGCAGCTAGAATGGCATAGTCGGGATG 9959 >seq4745 Length=15183 Score = 136 bits (150), Expect = 6e-27 Identities = 579/920 (63%), Gaps = 65/920 (7%) Strand=Plus/Plus Query 46323 TGACATAACTCCCATTTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCC 46382 || |||||| || ||||||||| || || || || |||||||| || || || ||||| Sbjct 8675 TGCCATAACACCAGCTTTTTGGTAGTCGCCAACTCGCTTCTCGAAGAAGTTGGTCTTGCC 8734 Query 46383 TTCCAATGATATATTTTCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAA 46442 | | | || || |||||||| || || || ||||| | |||| || | | Sbjct 8735 TGCGAGAGAAATGTTTTCCATGAAGTCGAATGGATTGGCTGATCGGTAAACCTTCTCATT 8794 Query 46443 TCCTAATTCTGAAATCAGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACA 46502 || | | || || | ||||| ||||| || || || ||||||| || | Sbjct 8795 ACCAAGAGCAACAAGAAGACGGTCTGCGACGAACTCAATGTATTGCTTCATCAAATCCGA 8854 Query 46503 ATTCATTCCTATGAGTTTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGAC 46562 ||||| || | ||| || ||||| ||||| | || ||||| ||||| ||| Sbjct 8855 GTTCATGCCAAGGAGAGCACATGGAAGAGCTTCCGTCAAGAATTCTTGCTCAATCTGGAC 8914 Query 46563 AGCATCCGATATTATCGATGTT--ACTGTTTCCTCACTTGGTGGATGCATCAAATGTTTA 46620 ||| || | || || | || | || | || | ||||| ||||| |||| || Sbjct 8915 AGCCTCTG-TAATAAC-ATCCTGAACGGCTTGTTTGCTTGGGCGATGCTTCAAGTGCGAG 8972 Query 46621 AACATTAAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAA 46680 || | | || || || || |||||| || || || | || | ||||| ||| Sbjct 8973 AAGAGCAGGCAGGCGAAGTCGGTATGAAGACCCTCGTCACGGGAGATGAGCTCGTTGGAA 9032 Query 46681 AATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCA 46740 || ||||| |||| ||| | |||||||| |||||||| || |||| ||||| || ||| Sbjct 9033 AAGGTGAGACCAGCCATCAAGCCACGCTTCTTGAGCCAGAAAATAGAGGCGAAGGAACCA 9092 Query 46741 GAAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCA 46800 ||||| || ||||| || || ||||||||||| || | | | | | | | Sbjct 9093 CTGAAGAAGATACCTTCAACGGCAGCGAATGCGACGAGACGTTGAGCAAAGGTAGAGTTC 9152 Query 46801 TTA---TGAATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGT---- 46853 ||| | |||||| || |||||| || ||||| ||||| | ||||| | ||| Sbjct 9153 TTATCCTCAATCCATCTAACAGCCCAGTCGGCCTTCTTCTTAATGCAAGGAACTGTGCAA 9212 Query 46854 --------------TTC-------------------------------TAT----AGCAT 46864 ||| ||| ||||| Sbjct 9213 ATGATTAGCATGTATTCATACTGGCGATGAAAGACCAAAACTCACTAGTATCAATAGCAT 9272 Query 46865 TAAAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACA 46924 | |||||| | | |||| | | || || | |||||||| || | ||| || Sbjct 9273 TGAAGAGATATGTCTTTTGAGCTTGTTCCTTGATGTATGTATCGATGAGAAGCGAGTATG 9332 Query 46925 TTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAA 46984 |||| || || |||||||| || || || || ||||| || |||| |||||| | || Sbjct 9333 TTTCCGAGTGGATGTTTTCCATCATGATTTGGAAACCGTAGAAGCATCGTGCTTCCGGAA 9392 Query 46985 TCTGTACCTCTGTACAAAATCGTTCAGACAA-ATTCTCATTCACTATTCCATCACTAGCA 47043 | ||||||||| || || ||||| ||||| || ||||| || |||||||| || Sbjct 9393 TTTGTACCTCTCCACTGAAGCGTTC-GACAAGGTTTTCATTGACAATTCCATCGGATGCG 9451 Query 47044 GCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGT---TTATTC 47100 || || ||||| | || || || || || |||||| | | ||| || ||| Sbjct 9452 GCGAAGAATGCGAGAACGTGAGAGATGAAGTAACGCTCATCGTCATTGAGTCTGTTGTTC 9511 Query 47101 CAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCT 47160 ||||| | | ||| ||||| | ||| | ||| || || |||||||| || ||||| || Sbjct 9512 CAGTCGTGAAGATCCTTTGACAAATCGATTTCCTCTGCGGTCCAGAAGGATGCCTCGGCC 9571 Query 47161 TTTTTATACATATTCCATAT 47180 || || ||||| | ||| || Sbjct 9572 TTCTTGTACATCTGCCAGAT 9591 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712868943710400