Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rutstroemia_20echinophila_20[genbank_20GCA_5F000812885.1_202014-12-
31] 7,345 sequences; 40,250,382 total letters
Query= NC_031038.1
Length=222832
Score E
Sequences producing significant alignments: (Bits) Value
seq4887 356 3e-93
seq4745 136 6e-27
>seq4887
Length=16554
Score = 356 bits (394), Expect = 3e-93
Identities = 1334/2075 (64%), Gaps = 44/2075 (2%)
Strand=Plus/Minus
Query 75365 TTCTTATCCAACG-TGAACTGAATGGGAGAGGATGCTGGTTTTGTACGTAGATAGTACAT 75423
||||| ||||| |||| ||||| || | ||| || | | ||||| |||||||||||
Sbjct 12016 TTCTTGATCAACGGTGAATTGAATTGGTGCGGAAGCAGCCATAGTACGGAGATAGTACAT 11957
Query 75424 ACCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACT 75483
||||| || ||||| | ||||||| ||||||||| || | ||| |
Sbjct 11956 TCCAGTCTTGAGACCTAATTTCCATCCAGCAAAATGCATGGAAGTGATCTTGCCCATTGT 11897
Query 75484 CGGATCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGC 75543
|| || || || || ||||| || ||| ||||||||||||||| || | || ||
Sbjct 11896 AGGGTCCTTCATGTGGATGTTCATTGATTGAGATTGATCGATGAAAGCACCACGGTCTGC 11837
Query 75544 CGCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGAT 75603
||||| | | |||| | ||||| |||||||||| ||| ||| | | ||||
Sbjct 11836 GGCCATCTGAACAATGTTTCGTTGAGAGATTTCCCAAACAGTCTTGTAGAGAGCCTTGAG 11777
Query 75604 ATCATCTGGAAGATTTGTA---TTTTGAATGGATCCGCCATCAGATATAATTGTATTCTT 75660
||| |||| | || | | |||||||| ||||| || |||| || || |||||
Sbjct 11776 TTCAGCTGGGATGTTGGGAATGTTTTGAATAGATCCACCGTCAGCGATGATGCGGTTCTT 11717
Query 75661 GATCTCATCATTCCACAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACAAT 75720
|| | ||| ||| | | | ||| ||| | | || || || || ||||
Sbjct 11716 CATGTTGTCAGACCAAAGTCCCATGTCGACCAAATCCTTGAGAAGCCATGGGTTGACAAC 11657
Query 75721 TTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGA 75780
||| || ||||| | || || | || | || || || || ||||| || | | |
Sbjct 11656 TTGGAACTCTCCGGCCAGCACACGACGGGAATAGATGTTGGAAGTGTATGGCTCGAAACA 11597
Query 75781 TTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACT 75840
||| ||| || | |||||||| || ||||| |||||||| || || | |||||
Sbjct 11596 TTCGTTGAAACCGAGAATTTGAGATGTACTGGCAGTTGGCATAGGAGCAACAAGCAAACT 11537
Query 75841 ATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGA 75900
|| | | ||||||| |||| | || || | ||||||||| |||||||
Sbjct 11536 GTTGCGAATACCATGTTGCTTGATAGATTGCTTGAGGCTATCCCAATCCCAGAGATCTGT 11477
Query 75901 TGGTACAACATCCCAGAGATCGTATTGTAGAATTCCGTTGCTAGCATATGATCCATTATA 75960
|| |||| |||| | ||| ||||| || || ||| | | || || | ||
Sbjct 11476 AGGAGTAACACCCCACATATCATATTGAAGTTCACCCTTGGAAACTGGAGAACCTTCGTA 11417
Query 75961 TGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACT--CGCCTCTAACGCACCGTAA 76018
|| || || | || || | || | || ||| || || |||||||
Sbjct 11416 GGTCTCATATGGGCCCAACTCCTTGGCAA--TCTGAACAGACGAAGTCAAGGCACCGTGG 11359
Query 76019 TAAATTGTTTCGAAAATCTTCTTATTAAGATCTTGCGCTTCAAGACTATCAAAAGGATAA 76078
|| || || |||||||||| | ||||||| || || ||| | ||| || || ||
Sbjct 11358 TAGATGGTCTCGAAAATCTGGATGTTAAGATGTTTGGCCTCAGGTGAATCGAATGGCAAA 11299
Query 76079 TGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATGTCTC 76138
| | | | || ||||| || || |||||||| |||| | ||||||||| || |
Sbjct 11298 CGGAGAGCCAGGAAGGCATCAGCAAGACCCTGAACACCAACAGCAATAGGTCGGTGACGG 11239
Query 76139 ---TTATTGGAAATTTC-AGCTTCTGGAATAGGGTAATAATTAATATCTATAATTTTATT 76194
||| | |||| ||||||||| | ||| || || || || || ||||| || ||
Sbjct 11238 AAGTTACTC----TTTCTAGCTTCTGGGACAGGATAGTAGTTGATGTCAATAATCTTGTT 11183
Query 76195 GAGATTTCTGACAACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATTTTCCATC 76254
| ||||||||||| |||| ||| || || | || || | |||||| | |||| ||
Sbjct 11182 CAAGTTTCTGACAACAACTTGAACGACCTCATGAAGCTTTTGGAAATCATAAGTTCCCTC 11123
Query 76255 TATCA------CAAACATATTAAGAGCTATAGATGCTAGATTACAAACGGCTACCTCATT 76308
|| |||| | ||||| ||||| || | ||||| || |||||||
Sbjct 11122 AGCCATGTTGACAAAGGTTGGGAGAGCAATAGAAGCCAAGTTACAGCAAGCAACCTCATC 11063
Query 76309 AGCATTGGCATATTGTATTATCTCCGTGCATAGATTA---CTACACTTGATAGTTCCAAG 76365
| | |||| | || || ||||| | || |||| ||| || || ||
Sbjct 11062 CGGTGCAGAGTATTCGACGATTTCTGTGCACAAGTTGGAGCTACG---GATTGTGCCGAG 11006
Query 76366 ATTTTGTTGGTTGCTCTTTTTGTTACATGAGTCCTTATAAAGAACAAACGGAGTTCCAGT 76425
|| | |||||| ||||||||||| || | || || ||||| | || || |||||||
Sbjct 11005 GTTCTTTTGGTTACTCTTTTTGTTGCAAGCATCTTTGTAAAGCATGAAAGGGTTTCCAGT 10946
Query 76426 TTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTTTTATTATA----GATT 76481
||| |||| | || | || || | ||| | | ||| || || | ||
Sbjct 10945 CTCAGTCTGGGCCTCAAGGATGGAATACCAAAGCTTTTGAGCCTTGATGGTCTTACGACC 10886
Query 76482 TGTATCGCTTCTCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACAT 76541
| || | |||||| | | || || | | || || |||||||| || | ||||
Sbjct 10885 TTTACCTTGTCTCTCGTA-ACCTTCA-TAGAGAGCC--TCGAATTCATCACCATAGACAT 10830
Query 76542 CATCCAAACCAGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCC 76601
|| |||| || |||||||| || || ||||| | || ||| || || | | | ||| |
Sbjct 10829 CAGCCAAGCCTGGACATTCGTTAGGGCACATGAGTGTCCAGTCTCCGTTCTTTTCAACAC 10770
Query 76602 GTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTT 76661
| ||||| |||||||| || ||||| || ||| || ||||| || | |||| ||| |
Sbjct 10769 GCTTCATGAAGAGATCTGGAATCCAGAGGGCATAGAAGAGATCGCGTGCTCTAACTTCCT 10710
Query 76662 CATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTA 76721
| || || |||||| || || | |||||| | | ||| | |||||||||||| |
Sbjct 10709 CTTTGCCGTGGTTCTTTCGGAGGTCCAAGAACTCAAAGACATCCGCATGCCATGGTTCAA 10650
Query 76722 GATATATCGCCATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGT 76781
| || | || | |||| || || || ||||| || || || | |||||| || ||||
Sbjct 10649 GGTAAACGGCAAATGCACCAGGGCGCTTGTTACCACCTTGGTCGACATATCTAGCGGTGT 10590
Query 76782 TATTATAAACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATAT 76841
| || |||||| | ||| |||| || |||||||| |||| ||||| || | ||| |
Sbjct 10589 TGTTGAAAACTCGAAGCATAGGAACGATACCGTTAGAGTTACCGTTTGTGCCTGCAATGT 10530
Query 76842 AACTTCCACATGCACGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGA 76901
| ||| ||||| || | || || || || || || || | || || |
Sbjct 10529 AGGCACCAGTAGCACGGATTCTGTGGATGTTGAGACCAATACCACCAGCGTTCTTTGAAA 10470
Query 76902 TTAGAGCACAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGTTAA 76961
| | |||||| ||||| || |||||||| || || |||||||| ||| |||| | ||
Sbjct 10469 TCATAGCACAAATCTTCAAAGTATCATAGATACCATCAATACTATCCTCCTTCATATCAA 10410
Query 76962 GAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATG 77021
||| || || || | ||| || ||| || ||| || | ||| ||||| |
Sbjct 10409 TAAGGAAGCATGATGAAAGCTGAGCCTGTGGAGTACCCGCAGAGAAGAGTGTTGGAGAAG 10350
Query 77022 CATGAGTGAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCTTCTATATC-C 77080
| || || || |||| | || | | ||||||||||| || | ||| |||||
Sbjct 10349 CGTGTGTAAAGTATTTGTTGGACATCAAGTTGTATGTTTCGATGGCACTTTCAATATCAT 10290
Query 77081 CATTGATGAATTCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTCTTA 77140
|| | ||||| || || || |||||||| | ||| || || || ||||| || ||
Sbjct 10289 CACCG-TGAATACCAACGGCAACACGCATGATCATTTGTTGTGGACGTTCAGCAACATTT 10231
Query 77141 TTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAA 77200
| | | | ||||||| || | ||| || || || || || | ||| |
Sbjct 10230 CCGTCGAGACGGAGGAGGTATGATCGCTCAAGAGTCTTGAATCCGAAGTATTGGTAGTTA 10171
Query 77201 AAGTCTCTTTCGTAAATAATAACCGAATTTAGTTTGTCCTTATATTTGGTAACA-ATATC 77259
|||||||| || |||| || | || || |||| ||| || | | ||||| ||
Sbjct 10170 AAGTCTCTGTCATAAACGATTGCAGAGTTGAGTTCTGCCTCATGTCTCATAACACATTCG 10111
Query 77260 CATG--ACAGTGGTAGAAATAATTGGAGATCGTATTCCATTTTTAGGATTAACATAGTTA 77317
||| | || | ||| || |||||| | |||||||| ||||| ||||
Sbjct 10110 TATGTTTCCTTGCT---AATCATAGGAGATTTGGTGCCATTTTTGGGATTCGTGTAGTGG 10054
Query 77318 AATAAGTCTTCCATTACGTCGCTAAATAGtttttttGTTTCCTTGTGTAGATTCGATACG 77377
||| ||| || || | | ||| | || || |||| ||||| ||||| || ||
Sbjct 10053 TATAGGTCGCTAATGACATGGGAGAATTGCTTCTTGGTTTGTTTGTGAAGATTGGAGACT 9994
Query 77378 GCTATTCTAGCAGCTAGAATTGCATAGTCAGGATG 77412
|| || | |||||||||||| |||||||| |||||
Sbjct 9993 GCAATACGAGCAGCTAGAATGGCATAGTCGGGATG 9959
>seq4745
Length=15183
Score = 136 bits (150), Expect = 6e-27
Identities = 579/920 (63%), Gaps = 65/920 (7%)
Strand=Plus/Plus
Query 46323 TGACATAACTCCCATTTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCC 46382
|| |||||| || ||||||||| || || || || |||||||| || || || |||||
Sbjct 8675 TGCCATAACACCAGCTTTTTGGTAGTCGCCAACTCGCTTCTCGAAGAAGTTGGTCTTGCC 8734
Query 46383 TTCCAATGATATATTTTCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAA 46442
| | | || || |||||||| || || || ||||| | |||| || | |
Sbjct 8735 TGCGAGAGAAATGTTTTCCATGAAGTCGAATGGATTGGCTGATCGGTAAACCTTCTCATT 8794
Query 46443 TCCTAATTCTGAAATCAGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACA 46502
|| | | || || | ||||| ||||| || || || ||||||| || |
Sbjct 8795 ACCAAGAGCAACAAGAAGACGGTCTGCGACGAACTCAATGTATTGCTTCATCAAATCCGA 8854
Query 46503 ATTCATTCCTATGAGTTTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGAC 46562
||||| || | ||| || ||||| ||||| | || ||||| ||||| |||
Sbjct 8855 GTTCATGCCAAGGAGAGCACATGGAAGAGCTTCCGTCAAGAATTCTTGCTCAATCTGGAC 8914
Query 46563 AGCATCCGATATTATCGATGTT--ACTGTTTCCTCACTTGGTGGATGCATCAAATGTTTA 46620
||| || | || || | || | || | || | ||||| ||||| |||| ||
Sbjct 8915 AGCCTCTG-TAATAAC-ATCCTGAACGGCTTGTTTGCTTGGGCGATGCTTCAAGTGCGAG 8972
Query 46621 AACATTAAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAA 46680
|| | | || || || || |||||| || || || | || | ||||| |||
Sbjct 8973 AAGAGCAGGCAGGCGAAGTCGGTATGAAGACCCTCGTCACGGGAGATGAGCTCGTTGGAA 9032
Query 46681 AATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCA 46740
|| ||||| |||| ||| | |||||||| |||||||| || |||| ||||| || |||
Sbjct 9033 AAGGTGAGACCAGCCATCAAGCCACGCTTCTTGAGCCAGAAAATAGAGGCGAAGGAACCA 9092
Query 46741 GAAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCA 46800
||||| || ||||| || || ||||||||||| || | | | | | | |
Sbjct 9093 CTGAAGAAGATACCTTCAACGGCAGCGAATGCGACGAGACGTTGAGCAAAGGTAGAGTTC 9152
Query 46801 TTA---TGAATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGT---- 46853
||| | |||||| || |||||| || ||||| ||||| | ||||| | |||
Sbjct 9153 TTATCCTCAATCCATCTAACAGCCCAGTCGGCCTTCTTCTTAATGCAAGGAACTGTGCAA 9212
Query 46854 --------------TTC-------------------------------TAT----AGCAT 46864
||| ||| |||||
Sbjct 9213 ATGATTAGCATGTATTCATACTGGCGATGAAAGACCAAAACTCACTAGTATCAATAGCAT 9272
Query 46865 TAAAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACA 46924
| |||||| | | |||| | | || || | |||||||| || | ||| ||
Sbjct 9273 TGAAGAGATATGTCTTTTGAGCTTGTTCCTTGATGTATGTATCGATGAGAAGCGAGTATG 9332
Query 46925 TTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAA 46984
|||| || || |||||||| || || || || ||||| || |||| |||||| | ||
Sbjct 9333 TTTCCGAGTGGATGTTTTCCATCATGATTTGGAAACCGTAGAAGCATCGTGCTTCCGGAA 9392
Query 46985 TCTGTACCTCTGTACAAAATCGTTCAGACAA-ATTCTCATTCACTATTCCATCACTAGCA 47043
| ||||||||| || || ||||| ||||| || ||||| || |||||||| ||
Sbjct 9393 TTTGTACCTCTCCACTGAAGCGTTC-GACAAGGTTTTCATTGACAATTCCATCGGATGCG 9451
Query 47044 GCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGT---TTATTC 47100
|| || ||||| | || || || || || |||||| | | ||| || |||
Sbjct 9452 GCGAAGAATGCGAGAACGTGAGAGATGAAGTAACGCTCATCGTCATTGAGTCTGTTGTTC 9511
Query 47101 CAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCT 47160
||||| | | ||| ||||| | ||| | ||| || || |||||||| || ||||| ||
Sbjct 9512 CAGTCGTGAAGATCCTTTGACAAATCGATTTCCTCTGCGGTCCAGAAGGATGCCTCGGCC 9571
Query 47161 TTTTTATACATATTCCATAT 47180
|| || ||||| | ||| ||
Sbjct 9572 TTCTTGTACATCTGCCAGAT 9591
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 712868943710400
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