Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20echinophila_20[genbank_20GCA_5F000812885.1_202014-12- 31] 7,345 sequences; 40,250,382 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq5062 131 4e-25 seq894 91.5 3e-13 seq5771 84.2 5e-11 >seq5062 Length=19932 Score = 131 bits (144), Expect = 4e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| | |||||||| ||||| || |||||||||||||||| | ||| | |||||| Sbjct 11093 AGGACCAAGTGAAGAGTCGACTCCTTCTGGATGTTGTAATCGGAAAGAGTGCGGCCATCT 11152 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || ||||||||||| || | || || || | | |||||| ||||| || Sbjct 11153 TCGAGTTGCTTGCCGGCGAAGATTAGACGTTGTTGATCAGGTGGGATTCCCTCCTTATCC 11212 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || || ||||||| | || | |||| || ||| || || || || || ||| Sbjct 11213 TGGATCTTGGTTTTGACATTATCGATAGTGTCGGAGGACTCGACCTCTAGGGTGATGGTT 11272 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || |||||||| ||||| ||||||| |||||| Sbjct 11273 TTACCCGTGAGGGTCTTGACGAAGATCTGCAT 11304 >seq894 Length=6424 Score = 91.5 bits (100), Expect = 3e-13 Identities = 145/208 (70%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 ||||| || || | ||| | ||| || || || ||||||||||| |||| | ||| | Sbjct 3676 AGTCTCAGAACCAAATGTAAAGTCGATTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGG 3735 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 || || || || || || |||||||| | | || || || | | ||| || ||| Sbjct 3736 CCGTCCTCAAGTTGCTTGCCAGCGAAGATCAAACGTTGTTGATCAGGGGGGATACCCTCC 3795 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || |||||||| || || ||| | || | | || ||| || || |||||||| Sbjct 3796 TTATCTTGAATCTTGGTCTTAACATTGTCGATAGTATCCGAAGATTCAACCTCAAGAGTG 3855 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGA 152094 ||||| ||||| ||||||||||| |||| Sbjct 3856 ATAGTCTTGCCGGTGAGAGTCTTGACGA 3883 Score = 84.2 bits (92), Expect = 5e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 |||||| ||||| ||||||||||| || ||||||||||| ||| ||||| | ||||| Sbjct 3965 GAGGACGAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTCAAAGTACGACCATC 4024 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 || || || || || ||||| | | ||| ||||| | | || || ||||| || Sbjct 4025 CTCGAGTTGCTTGCCAGCAAAGATCAAACGCTGTTGGTCAGGAGGAATACCCTCCTTATC 4084 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 || || || ||||| | || | |||| ||| || || ||||| || || || Sbjct 4085 CTGGATCTTAGTCTTGACGTTGTCGATAGTGTCGGAAGATTCAACCTCAAGGGTGATGGT 4144 Query 152072 TTTGCCCGTGA 152082 ||||| |||| Sbjct 4145 CTTGCCGGTGA 4155 >seq5771 Length=11851 Score = 84.2 bits (92), Expect = 5e-11 Identities = 129/182 (71%), Gaps = 4/182 (2%) Strand=Plus/Plus Query 151917 TTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAG--GCTTTTCCCGGCGAAGA 151974 ||||||||||| ||||| | ||||| | ||||| || || ||||| || ||||||| Sbjct 7519 TTTTGGATGTTATAATCAGACAAAGTGCGTCCATCCTCAAGTTGCTTT--CCAGCGAAGA 7576 Query 151975 TAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCT 152034 | | | || || |||| | ||||| ||||| |||||||| || |||||| | | Sbjct 7577 TCAAACGTTGTTGATCCGGGGGAATTCCCTCCTTGTCTTGAATCTTGGTCTTGACATTGT 7636 Query 152035 CTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGA 152094 | | | |||| || || || ||||| || || || || ||||| | ||||| |||| Sbjct 7637 CGATGGTGTCGGAGGATTCGACCTCAAGGGTGATGGTCTTACCCGTCAAGGTCTTGACGA 7696 Query 152095 AG 152096 || Sbjct 7697 AG 7698 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153712216448495