Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rutstroemia_20echinophila_20[genbank_20GCA_5F000812885.1_202014-12-
31] 7,345 sequences; 40,250,382 total letters
Query= NC_031465.1
Length=360610
Score E
Sequences producing significant alignments: (Bits) Value
seq5062 131 4e-25
seq894 91.5 3e-13
seq5771 84.2 5e-11
>seq5062
Length=19932
Score = 131 bits (144), Expect = 4e-25
Identities = 156/212 (74%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952
||||| | |||||||| ||||| || |||||||||||||||| | ||| | ||||||
Sbjct 11093 AGGACCAAGTGAAGAGTCGACTCCTTCTGGATGTTGTAATCGGAAAGAGTGCGGCCATCT 11152
Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012
|| || || ||||||||||| || | || || || | | |||||| ||||| ||
Sbjct 11153 TCGAGTTGCTTGCCGGCGAAGATTAGACGTTGTTGATCAGGTGGGATTCCCTCCTTATCC 11212
Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072
|| || || ||||||| | || | |||| || ||| || || || || || |||
Sbjct 11213 TGGATCTTGGTTTTGACATTATCGATAGTGTCGGAGGACTCGACCTCTAGGGTGATGGTT 11272
Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|| |||||||| ||||| ||||||| ||||||
Sbjct 11273 TTACCCGTGAGGGTCTTGACGAAGATCTGCAT 11304
>seq894
Length=6424
Score = 91.5 bits (100), Expect = 3e-13
Identities = 145/208 (70%), Gaps = 0/208 (0%)
Strand=Plus/Plus
Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946
||||| || || | ||| | ||| || || || ||||||||||| |||| | ||| |
Sbjct 3676 AGTCTCAGAACCAAATGTAAAGTCGATTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGG 3735
Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006
|| || || || || || |||||||| | | || || || | | ||| || |||
Sbjct 3736 CCGTCCTCAAGTTGCTTGCCAGCGAAGATCAAACGTTGTTGATCAGGGGGGATACCCTCC 3795
Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066
|| |||||||| || || ||| | || | | || ||| || || ||||||||
Sbjct 3796 TTATCTTGAATCTTGGTCTTAACATTGTCGATAGTATCCGAAGATTCAACCTCAAGAGTG 3855
Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGA 152094
||||| ||||| ||||||||||| ||||
Sbjct 3856 ATAGTCTTGCCGGTGAGAGTCTTGACGA 3883
Score = 84.2 bits (92), Expect = 5e-11
Identities = 133/191 (70%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951
|||||| ||||| ||||||||||| || ||||||||||| ||| ||||| | |||||
Sbjct 3965 GAGGACGAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTCAAAGTACGACCATC 4024
Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011
|| || || || || ||||| | | ||| ||||| | | || || ||||| ||
Sbjct 4025 CTCGAGTTGCTTGCCAGCAAAGATCAAACGCTGTTGGTCAGGAGGAATACCCTCCTTATC 4084
Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071
|| || || ||||| | || | |||| ||| || || ||||| || || ||
Sbjct 4085 CTGGATCTTAGTCTTGACGTTGTCGATAGTGTCGGAAGATTCAACCTCAAGGGTGATGGT 4144
Query 152072 TTTGCCCGTGA 152082
||||| ||||
Sbjct 4145 CTTGCCGGTGA 4155
>seq5771
Length=11851
Score = 84.2 bits (92), Expect = 5e-11
Identities = 129/182 (71%), Gaps = 4/182 (2%)
Strand=Plus/Plus
Query 151917 TTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAG--GCTTTTCCCGGCGAAGA 151974
||||||||||| ||||| | ||||| | ||||| || || ||||| || |||||||
Sbjct 7519 TTTTGGATGTTATAATCAGACAAAGTGCGTCCATCCTCAAGTTGCTTT--CCAGCGAAGA 7576
Query 151975 TAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCT 152034
| | | || || |||| | ||||| ||||| |||||||| || |||||| | |
Sbjct 7577 TCAAACGTTGTTGATCCGGGGGAATTCCCTCCTTGTCTTGAATCTTGGTCTTGACATTGT 7636
Query 152035 CTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGA 152094
| | | |||| || || || ||||| || || || || ||||| | ||||| ||||
Sbjct 7637 CGATGGTGTCGGAGGATTCGACCTCAAGGGTGATGGTCTTACCCGTCAAGGTCTTGACGA 7696
Query 152095 AG 152096
||
Sbjct 7697 AG 7698
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1153712216448495
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |