Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20echinophila_20[genbank_20GCA_5F000812885.1_202014-12- 31] 7,345 sequences; 40,250,382 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq894 188 1e-42 seq5062 165 2e-35 seq5771 161 2e-34 >seq894 Length=6424 Score = 188 bits (208), Expect = 1e-42 Identities = 175/222 (79%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || | || |||| |||||| || ||| || |||||||||||||| | Sbjct 3666 ACCACCACGAAGTCTCAGAACCAAATGTAAAGTCGATTCCTTCTGGATGTTGTAGTCGGA 3725 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| |||||||| ||||| ||||| || || || ||||||||||||||||| ||| || Sbjct 3726 AAGAGTGCGGCCGTCCTCAAGTTGCTTGCCAGCGAAGATCAAACGTTGTTGATCAGGGGG 3785 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||||||||||| ||||| ||||| | || || | |||||||| ||||||| ||| || Sbjct 3786 GATACCCTCCTTATCTTGAATCTTGGTCTTAACATTGTCGATAGTATCCGAAGATTCAAC 3845 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATAT 283093 || |||||||| ||||| || || | |||||| |||| ||| Sbjct 3846 CTCAAGAGTGATAGTCTTGCCGGTGAGAGTCTTGACGACTAT 3887 Score = 174 bits (192), Expect = 3e-38 Identities = 177/228 (78%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||| |||||||| |||| |||||| || || ||||| ||||||||||| | Sbjct 3439 CCACCACGAAGGCGAAGAACCAAATGTAAAGTCGACTCCTTTTGAATGTTGTAGTCCGAC 3498 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || ||||||||||| | || || || || ||||| | ||||||||| ||| ||| Sbjct 3499 AGGGTACGGCCATCCTCCAACTGCTTACCAGCGAAGATGAGACGTTGTTGATCAGGTGGA 3558 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCT-TTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || || ||||||||||| ||| ||||| |||||| | |||||||| || || | || || Sbjct 3559 ATGCCTTCCTTGTCTTGAATC-TTGCTCTTTACGTTGTCGATAGTATCAGATGACTCAAC 3617 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || | |||||| ||||| || || | |||||| ||||| |||||||| Sbjct 3618 CTCCAAAGTGATTGTCTTTCCGGTAAGAGTCTTGACGAAAATCTGCAT 3665 Score = 172 bits (190), Expect = 1e-37 Identities = 175/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||| || ||||| |||| || || ||||| || ||||| |||||||| || | | Sbjct 3211 CCACCACGGAGACGAAGCACCAAGTGCAAGGTGCTCTCCTTTTGAATGTTGTAATCCGAA 3270 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || | |||||||| | ||| || || || || ||||| ||||||||||| || Sbjct 3271 AGAGTTCTACCATCCTCCAATTGCTTTCCAGCGAAAATCAATCGTTGTTGGTCGGGTGGG 3330 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || |||||||||||||||||||||| || ||| |||| || || || || | ||| || Sbjct 3331 ATGCCCTCCTTGTCTTGGATCTTTGTCTTGACGTTATCAATGGTATCTGACGATTCCACC 3390 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100 || | || || ||||| || |||||||||||||| || || |||||| Sbjct 3391 TCTAACGTAATTGTCTTTCCAGTCAAAGTCTTAACAAAGATTTGCATT 3438 Score = 152 bits (168), Expect = 1e-31 Identities = 156/204 (76%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| ||||| || || || || ||||| | || || || |||||||||||||| Sbjct 3950 ACCGCCACGAAGACGGAGGACGAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGCT 4009 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 | || || |||||||| ||||| || || |||||||||||||| ||||||||| || Sbjct 4010 CAAAGTACGACCATCCTCGAGTTGCTTGCCAGCAAAGATCAAACGCTGTTGGTCAGGAGG 4069 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||||||||| || |||||||| | || ||| | ||||||||||| |||| ||| || Sbjct 4070 AATACCCTCCTTATCCTGGATCTTAGTCTTGACGTTGTCGATAGTGTCGGAAGATTCAAC 4129 Query 283052 TTCGAGAGTGATCGTCTTACCCGT 283075 || || ||||| ||||| || || Sbjct 4130 CTCAAGGGTGATGGTCTTGCCGGT 4153 >seq5062 Length=19932 Score = 165 bits (182), Expect = 2e-35 Identities = 151/191 (79%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || || ||||||||||| || | ||| ||||||||||| || ||||| || ||||| ||| Sbjct 11114 TCCTTCTGGATGTTGTAATCGGAAAGAGTGCGGCCATCTTCGAGTTGCTTGCCGGCGAAG 11173 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 || | ||||||||| ||| || || |||||||| || |||||||| | ||| || || Sbjct 11174 ATTAGACGTTGTTGATCAGGTGGGATTCCCTCCTTATCCTGGATCTTGGTTTTGACATTA 11233 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 ||||||||||| || | ||||| || || ||||| || |||||||| | ||||| ||| Sbjct 11234 TCGATAGTGTCGGAGGACTCGACCTCTAGGGTGATGGTTTTACCCGTGAGGGTCTTGACG 11293 Query 283089 AATATCTGCAT 283099 || |||||||| Sbjct 11294 AAGATCTGCAT 11304 >seq5771 Length=11851 Score = 161 bits (178), Expect = 2e-34 Identities = 148/187 (79%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971 ||||||||||| || |||| | ||||| |||||||| ||||| || || || |||||| Sbjct 7519 TTTTGGATGTTATAATCAGACAAAGTGCGTCCATCCTCAAGTTGCTTTCCAGCGAAGATC 7578 Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCG 283031 ||||||||||| || ||||| |||||||||||||| ||||| | || || | ||| Sbjct 7579 AAACGTTGTTGATCCGGGGGAATTCCCTCCTTGTCTTGAATCTTGGTCTTGACATTGTCG 7638 Query 283032 ATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAAT 283091 || ||||| || | |||||| || || ||||| |||||||||||||| ||||| ||||| Sbjct 7639 ATGGTGTCGGAGGATTCGACCTCAAGGGTGATGGTCTTACCCGTCAAGGTCTTGACGAAG 7698 Query 283092 ATCTGCA 283098 | |||| Sbjct 7699 CTATGCA 7705 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046640693663630