Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rutstroemia_20echinophila_20[genbank_20GCA_5F000812885.1_202014-12-
31] 7,345 sequences; 40,250,382 total letters
Query= NC_032255.1
Length=112536
Score E
Sequences producing significant alignments: (Bits) Value
seq5062 120 2e-22
seq894 102 6e-17
seq5771 100 2e-16
>seq5062
Length=19932
Score = 120 bits (132), Expect = 2e-22
Identities = 153/211 (73%), Gaps = 0/211 (0%)
Strand=Plus/Plus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188
|||| |||||| || |||||| |||||||||||||||| || ||| | || ||
Sbjct 11096 ACCAAGTGAAGAGTCGACTCCTTCTGGATGTTGTAATCGGAAAGAGTGCGGCCATCTTCG 11155
Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248
|| ||||| ||||| ||||| | ||| || ||||| | || | || ||||| |||
Sbjct 11156 AGTTGCTTGCCGGCGAAGATTAGACGTTGTTGATCAGGTGGGATTCCCTCCTTATCCTGG 11215
Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308
||||| || | | | || ||||||| ||| || ||||| | || || || ||
Sbjct 11216 ATCTTGGTTTTGACATTATCGATAGTGTCGGAGGACTCGACCTCTAGGGTGATGGTTTTA 11275
Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCATGA 44339
|||||||||||||| |||||||| |||||||
Sbjct 11276 CCCGTGAGGGTCTTGACGAAGATCTGCATGA 11306
>seq894
Length=6424
Score = 102 bits (112), Expect = 6e-17
Identities = 151/212 (71%), Gaps = 4/212 (2%)
Strand=Plus/Plus
Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGC--GAGTTGGCGCTCGTCG 44185
||||| ||| | |||||||||||||| ||||||||||| | ||||| | | ||
Sbjct 3228 CACCAAGTGCAAGGTGCTCTCCTTTTGAATGTTGTAATCCGAAAGAGTT--CTACCATCC 3285
Query 44186 TCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCC 44245
|||| ||||| || || || ||||| || || || || | || | || ||||| ||
Sbjct 3286 TCCAATTGCTTTCCAGCGAAAATCAATCGTTGTTGGTCGGGTGGGATGCCCTCCTTGTCT 3345
Query 44246 GTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTC 44305
||||| ||| | | | ||||| || | ||||||||||| | |||||| |||
Sbjct 3346 TGGATCTTTGTCTTGACGTTATCAATGGTATCTGACGATTCCACCTCTAACGTAATTGTC 3405
Query 44306 TTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
||||| || | ||||| || |||||||||||
Sbjct 3406 TTTCCAGTCAAAGTCTTAACAAAGATTTGCAT 3437
Score = 91.5 bits (100), Expect = 1e-13
Identities = 131/183 (72%), Gaps = 4/183 (2%)
Strand=Plus/Plus
Query 44147 TCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAG 44206
||||| ||||||||||| |||| || ||| |||| || || ||||| || || |||
Sbjct 3703 TCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCGTCCTCAAGTTGCTTGCCAGCGAAG 3762
Query 44207 ATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATG 44264
|||||||| || ||||| | || | ||| ||||| || ||||| ||| || ||
Sbjct 3763 ATCAAACGTTGTTGATCAGGGGGGATACCCTCCTTATCTTGAATCTTGGTCTTAACATTG 3822
Query 44265 TTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCA 44324
| | || || || | ||||| ||||| | || || ||||| || ||||| ||||| |
Sbjct 3823 T--CGATAGTATCCGAAGATTCAACCTCAAGAGTGATAGTCTTGCCGGTGAGAGTCTTGA 3880
Query 44325 CGA 44327
|||
Sbjct 3881 CGA 3883
Score = 82.4 bits (90), Expect = 5e-11
Identities = 120/170 (71%), Gaps = 0/170 (0%)
Strand=Plus/Plus
Query 44146 CTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAA 44205
|||||| ||||||||||| ||| | || | || || || ||||| || |||||
Sbjct 3986 CTCCTTCTGGATGTTGTAGTCGCTCAAAGTACGACCATCCTCGAGTTGCTTGCCAGCAAA 4045
Query 44206 GATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGT 44265
|||||||||||| || || | ||| | ||| ||||| ||| ||||| ||| | |
Sbjct 4046 GATCAAACGCTGTTGGTCAGGAGGAATACCCTCCTTATCCTGGATCTTAGTCTTGACGTT 4105
Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGA 44315
| || ||||||| ||||| ||||| | || || ||||| || ||||
Sbjct 4106 GTCGATAGTGTCGGAAGATTCAACCTCAAGGGTGATGGTCTTGCCGGTGA 4155
>seq5771
Length=11851
Score = 100 bits (110), Expect = 2e-16
Identities = 138/191 (72%), Gaps = 4/191 (2%)
Strand=Plus/Plus
Query 44148 CCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGA 44207
||||||||||||| ||||| | | ||| | || || || ||||| || || ||||
Sbjct 7517 CCTTTTGGATGTTATAATCAGACAAAGTGCGTCCATCCTCAAGTTGCTTTCCAGCGAAGA 7576
Query 44208 TCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGT 44265
||||||| || ||||| | || | || ||||| || ||||| ||| || |||
Sbjct 7577 TCAAACGTTGTTGATCCGGGGGAATTCCCTCCTTGTCTTGAATCTTGGTCTTGACATTGT 7636
Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325
| |||||||||| |||||| ||||| | || || ||||| ||||| | |||||| ||
Sbjct 7637 --CGATGGTGTCGGAGGATTCGACCTCAAGGGTGATGGTCTTACCCGTCAAGGTCTTGAC 7694
Query 44326 GAAGATTTGCA 44336
|||| | ||||
Sbjct 7695 GAAGCTATGCA 7705
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 359958174671865
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |