Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20echinophila_20[genbank_20GCA_5F000812885.1_202014-12- 31] 7,345 sequences; 40,250,382 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq5062 120 2e-22 seq894 102 6e-17 seq5771 100 2e-16 >seq5062 Length=19932 Score = 120 bits (132), Expect = 2e-22 Identities = 153/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||| |||||| || |||||| |||||||||||||||| || ||| | || || Sbjct 11096 ACCAAGTGAAGAGTCGACTCCTTCTGGATGTTGTAATCGGAAAGAGTGCGGCCATCTTCG 11155 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 || ||||| ||||| ||||| | ||| || ||||| | || | || ||||| ||| Sbjct 11156 AGTTGCTTGCCGGCGAAGATTAGACGTTGTTGATCAGGTGGGATTCCCTCCTTATCCTGG 11215 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| || | | | || ||||||| ||| || ||||| | || || || || Sbjct 11216 ATCTTGGTTTTGACATTATCGATAGTGTCGGAGGACTCGACCTCTAGGGTGATGGTTTTA 11275 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCATGA 44339 |||||||||||||| |||||||| ||||||| Sbjct 11276 CCCGTGAGGGTCTTGACGAAGATCTGCATGA 11306 >seq894 Length=6424 Score = 102 bits (112), Expect = 6e-17 Identities = 151/212 (71%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGC--GAGTTGGCGCTCGTCG 44185 ||||| ||| | |||||||||||||| ||||||||||| | ||||| | | || Sbjct 3228 CACCAAGTGCAAGGTGCTCTCCTTTTGAATGTTGTAATCCGAAAGAGTT--CTACCATCC 3285 Query 44186 TCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCC 44245 |||| ||||| || || || ||||| || || || || | || | || ||||| || Sbjct 3286 TCCAATTGCTTTCCAGCGAAAATCAATCGTTGTTGGTCGGGTGGGATGCCCTCCTTGTCT 3345 Query 44246 GTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTC 44305 ||||| ||| | | | ||||| || | ||||||||||| | |||||| ||| Sbjct 3346 TGGATCTTTGTCTTGACGTTATCAATGGTATCTGACGATTCCACCTCTAACGTAATTGTC 3405 Query 44306 TTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||| || | ||||| || ||||||||||| Sbjct 3406 TTTCCAGTCAAAGTCTTAACAAAGATTTGCAT 3437 Score = 91.5 bits (100), Expect = 1e-13 Identities = 131/183 (72%), Gaps = 4/183 (2%) Strand=Plus/Plus Query 44147 TCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAG 44206 ||||| ||||||||||| |||| || ||| |||| || || ||||| || || ||| Sbjct 3703 TCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCGTCCTCAAGTTGCTTGCCAGCGAAG 3762 Query 44207 ATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATG 44264 |||||||| || ||||| | || | ||| ||||| || ||||| ||| || || Sbjct 3763 ATCAAACGTTGTTGATCAGGGGGGATACCCTCCTTATCTTGAATCTTGGTCTTAACATTG 3822 Query 44265 TTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCA 44324 | | || || || | ||||| ||||| | || || ||||| || ||||| ||||| | Sbjct 3823 T--CGATAGTATCCGAAGATTCAACCTCAAGAGTGATAGTCTTGCCGGTGAGAGTCTTGA 3880 Query 44325 CGA 44327 ||| Sbjct 3881 CGA 3883 Score = 82.4 bits (90), Expect = 5e-11 Identities = 120/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 44146 CTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAA 44205 |||||| ||||||||||| ||| | || | || || || ||||| || ||||| Sbjct 3986 CTCCTTCTGGATGTTGTAGTCGCTCAAAGTACGACCATCCTCGAGTTGCTTGCCAGCAAA 4045 Query 44206 GATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGT 44265 |||||||||||| || || | ||| | ||| ||||| ||| ||||| ||| | | Sbjct 4046 GATCAAACGCTGTTGGTCAGGAGGAATACCCTCCTTATCCTGGATCTTAGTCTTGACGTT 4105 Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGA 44315 | || ||||||| ||||| ||||| | || || ||||| || |||| Sbjct 4106 GTCGATAGTGTCGGAAGATTCAACCTCAAGGGTGATGGTCTTGCCGGTGA 4155 >seq5771 Length=11851 Score = 100 bits (110), Expect = 2e-16 Identities = 138/191 (72%), Gaps = 4/191 (2%) Strand=Plus/Plus Query 44148 CCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGA 44207 ||||||||||||| ||||| | | ||| | || || || ||||| || || |||| Sbjct 7517 CCTTTTGGATGTTATAATCAGACAAAGTGCGTCCATCCTCAAGTTGCTTTCCAGCGAAGA 7576 Query 44208 TCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGT 44265 ||||||| || ||||| | || | || ||||| || ||||| ||| || ||| Sbjct 7577 TCAAACGTTGTTGATCCGGGGGAATTCCCTCCTTGTCTTGAATCTTGGTCTTGACATTGT 7636 Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | |||||||||| |||||| ||||| | || || ||||| ||||| | |||||| || Sbjct 7637 --CGATGGTGTCGGAGGATTCGACCTCAAGGGTGATGGTCTTACCCGTCAAGGTCTTGAC 7694 Query 44326 GAAGATTTGCA 44336 |||| | |||| Sbjct 7695 GAAGCTATGCA 7705 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359958174671865