Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20echinophila_20[genbank_20GCA_5F000812885.1_202014-12- 31] 7,345 sequences; 40,250,382 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq5062 159 8e-34 seq5771 134 3e-26 >seq5062 Length=19932 Score = 159 bits (176), Expect = 8e-34 Identities = 159/205 (78%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || ||||| || ||||| |||||||| ||||| || ||| ||| Sbjct 11301 CAGATCTTCGTCAAGACCCTCACGGGTAAAACCATCACCCTAGAGGTCGAGTCCTCCGAC 11242 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || |||||| ||||| ||||| || || |||||||| || || || ||| Sbjct 11241 ACTATCGATAATGTCAAAACCAAGATCCAGGATAAGGAGGGAATCCCACCTGATCAACAA 11182 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || || ||||||||||| | |||||| ||||||| ||| || Sbjct 11181 CGTCTAATCTTCGCCGGCAAGCAACTCGAAGATGGCCGCACTCTTTCCGATTACAACATC 11122 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || || || || |||| Sbjct 11121 CAGAAGGAGTCGACTCTTCA-CTTG 11098 >seq5771 Length=11851 Score = 134 bits (148), Expect = 3e-26 Identities = 137/179 (77%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 177930 TTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATC 177989 ||||| || || | || || || || |||||||| ||||| ||| ||| ||||||||| Sbjct 7697 TTCGTCAAGACCTTGACGGGTAAGACCATCACCCTTGAGGTCGAATCCTCCGACACCATC 7638 Query 177990 GAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTT 178049 || || ||||| |||||||| ||||| || ||||| || ||||| || ||||| | Sbjct 7637 GACAATGTCAAGACCAAGATTCAAGACAAGGAGGGAATTCCCCCGGATCAACAACGTTTG 7578 Query 178050 ATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAA 178108 |||||||| ||||| || || || |||||| | ||| | | ||||||||| ||||||| Sbjct 7577 ATCTTCGCTGGAAAGCAACTTGAGGATGGACGCACTTTGTCTGATTATAACATCCAAAA 7519 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203617919489930