Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rutstroemia_20echinophila_20[genbank_20GCA_5F000812885.1_202014-12-
31] 7,345 sequences; 40,250,382 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq5062 159 8e-34
seq5771 134 3e-26
>seq5062
Length=19932
Score = 159 bits (176), Expect = 8e-34
Identities = 159/205 (78%), Gaps = 1/205 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || ||||| || || ||||| || ||||| |||||||| ||||| || ||| |||
Sbjct 11301 CAGATCTTCGTCAAGACCCTCACGGGTAAAACCATCACCCTAGAGGTCGAGTCCTCCGAC 11242
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| ||||| || |||||| ||||| ||||| || || |||||||| || || || |||
Sbjct 11241 ACTATCGATAATGTCAAAACCAAGATCCAGGATAAGGAGGGAATCCCACCTGATCAACAA 11182
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || ||||||||||| || || ||||||||||| | |||||| ||||||| ||| ||
Sbjct 11181 CGTCTAATCTTCGCCGGCAAGCAACTCGAAGATGGCCGCACTCTTTCCGATTACAACATC 11122
Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128
|| || || || || || || ||||
Sbjct 11121 CAGAAGGAGTCGACTCTTCA-CTTG 11098
>seq5771
Length=11851
Score = 134 bits (148), Expect = 3e-26
Identities = 137/179 (77%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 177930 TTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATC 177989
||||| || || | || || || || |||||||| ||||| ||| ||| |||||||||
Sbjct 7697 TTCGTCAAGACCTTGACGGGTAAGACCATCACCCTTGAGGTCGAATCCTCCGACACCATC 7638
Query 177990 GAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTT 178049
|| || ||||| |||||||| ||||| || ||||| || ||||| || ||||| |
Sbjct 7637 GACAATGTCAAGACCAAGATTCAAGACAAGGAGGGAATTCCCCCGGATCAACAACGTTTG 7578
Query 178050 ATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAA 178108
|||||||| ||||| || || || |||||| | ||| | | ||||||||| |||||||
Sbjct 7577 ATCTTCGCTGGAAAGCAACTTGAGGATGGACGCACTTTGTCTGATTATAACATCCAAAA 7519
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203617919489930
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |