Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rutstroemia_20echinophila_20[genbank_20GCA_5F000812885.1_202014-12-
31] 7,345 sequences; 40,250,382 total letters
Query= NC_033780.1
Length=144510
Score E
Sequences producing significant alignments: (Bits) Value
seq5062 120 3e-22
seq894 96.9 3e-15
>seq5062
Length=19932
Score = 120 bits (132), Expect = 3e-22
Identities = 168/236 (71%), Gaps = 10/236 (4%)
Strand=Plus/Plus
Query 41633 CCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCG 41692
|| || || |||| ||| | |||| || || || ||||||||| ||||| || |||
Sbjct 11075 CCACCTCCACGTAAACGCAGGACCAAGTGAAGAGTCGACTCCTTCTGGATGTTGTAATCG 11134
Query 41693 GAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCG 41752
|| || ||||| | || ||||| |||||||||||||| || || || ||||| || |
Sbjct 11135 GAAAGAGTGCGGCCATCTTCGAGTTGCTTGCCGGCGAAGATTAGACGTTGTTGATCAGGT 11194
Query 41753 GGAACGCTCTCCTTGTCCATGAT-----TTTTTGCTTCAACGACGACACAGTGTCGCTCG 41807
|| | | |||||| ||| ||| |||| | | | || | ||||||| |
Sbjct 11195 GGGATTCCCTCCTTATCCTGGATCTTGGTTTTGACATTATCG-----ATAGTGTCGGAGG 11249
Query 41808 ACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863
|||| ||||| | || || ||||||||||| || ||||| ||||| |||||||||
Sbjct 11250 ACTCGACCTCTAGGGTGATGGTTTTACCCGTGAGGGTCTTGACGAAGATCTGCATG 11305
>seq894
Length=6424
Score = 96.9 bits (106), Expect = 3e-15
Identities = 162/232 (70%), Gaps = 8/232 (3%)
Strand=Plus/Plus
Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694
||| || || ||||| | ||||| |||| ||||||||||| |||||||| || || ||
Sbjct 3210 GCCACCACGGAGACGAAGCACCAAGTGCAAGGTGCTCTCCTTTTGAATGTTGTAATCCGA 3269
Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754
|| || | | || || | ||||| || ||||| |||| || |||||||| | ||
Sbjct 3270 AAGAGTTCTACCATCCTCCAATTGCTTTCCAGCGAAAATCAATCGTTGTTGGTCGGGTGG 3329
Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACA-CA---GTGTCGCTCGACT 41810
| || ||||||||| ||| ||| ||| |||| | || || || ||| |
Sbjct 3330 GATGCCCTCCTTGTCTTGGATCTTTGTCTT----GACGTTATCAATGGTATCTGACGATT 3385
Query 41811 CCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
||||||| | ||| || || || || |||| ||||| || || || |||||
Sbjct 3386 CCACCTCTAACGTAATTGTCTTTCCAGTCAAAGTCTTAACAAAGATTTGCAT 3437
Score = 96.9 bits (106), Expect = 3e-15
Identities = 141/194 (73%), Gaps = 4/194 (2%)
Strand=Plus/Plus
Query 41671 CTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 41730
|||||| |||||||| ||||| || ||||| || | || || | |||||| || |||||
Sbjct 3474 CTCCTTTTGAATGTTGTAGTCCGACAGGGTACGGCCATCCTCCAACTGCTTACCAGCGAA 3533
Query 41731 TATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCT-TCAACG 41789
|| || || ||||| || | |||| || |||||||| ||| | || ||| | |||
Sbjct 3534 GATGAGACGTTGTTGATCAGGTGGAATGCCTTCCTTGTCT-TGAATCTT-GCTCTTTACG 3591
Query 41790 ACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTT 41848
| | | ||| || ||||| ||||||| || || || || || || || |||||
Sbjct 3592 TTGTCGATAGTATCAGATGACTCAACCTCCAAAGTGATTGTCTTTCCGGTAAGAGTCTTG 3651
Query 41849 ACGAAAATCTGCAT 41862
||||||||||||||
Sbjct 3652 ACGAAAATCTGCAT 3665
Score = 82.4 bits (90), Expect = 7e-11
Identities = 104/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
||||| || ||||| | || ||||| || || ||||||||| ||||| ||||||
Sbjct 3951 CCGCCACGAAGACGGAGGACGAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTC 4010
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
| || || | || ||||| |||||||| || || |||| ||||||||||| | |||
Sbjct 4011 AAAGTACGACCATCCTCGAGTTGCTTGCCAGCAAAGATCAAACGCTGTTGGTCAGGAGGA 4070
Query 41756 ACGCTCTCCTTGTCCATGATTTT 41778
| | |||||| ||| ||| ||
Sbjct 4071 ATACCCTCCTTATCCTGGATCTT 4093
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462261554714000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |