Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20echinophila_20[genbank_20GCA_5F000812885.1_202014-12- 31] 7,345 sequences; 40,250,382 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq5062 120 3e-22 seq894 96.9 3e-15 >seq5062 Length=19932 Score = 120 bits (132), Expect = 3e-22 Identities = 168/236 (71%), Gaps = 10/236 (4%) Strand=Plus/Plus Query 41633 CCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCG 41692 || || || |||| ||| | |||| || || || ||||||||| ||||| || ||| Sbjct 11075 CCACCTCCACGTAAACGCAGGACCAAGTGAAGAGTCGACTCCTTCTGGATGTTGTAATCG 11134 Query 41693 GAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCG 41752 || || ||||| | || ||||| |||||||||||||| || || || ||||| || | Sbjct 11135 GAAAGAGTGCGGCCATCTTCGAGTTGCTTGCCGGCGAAGATTAGACGTTGTTGATCAGGT 11194 Query 41753 GGAACGCTCTCCTTGTCCATGAT-----TTTTTGCTTCAACGACGACACAGTGTCGCTCG 41807 || | | |||||| ||| ||| |||| | | | || | ||||||| | Sbjct 11195 GGGATTCCCTCCTTATCCTGGATCTTGGTTTTGACATTATCG-----ATAGTGTCGGAGG 11249 Query 41808 ACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||| ||||| | || || ||||||||||| || ||||| ||||| ||||||||| Sbjct 11250 ACTCGACCTCTAGGGTGATGGTTTTACCCGTGAGGGTCTTGACGAAGATCTGCATG 11305 >seq894 Length=6424 Score = 96.9 bits (106), Expect = 3e-15 Identities = 162/232 (70%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| | ||||| |||| ||||||||||| |||||||| || || || Sbjct 3210 GCCACCACGGAGACGAAGCACCAAGTGCAAGGTGCTCTCCTTTTGAATGTTGTAATCCGA 3269 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || || | | || || | ||||| || ||||| |||| || |||||||| | || Sbjct 3270 AAGAGTTCTACCATCCTCCAATTGCTTTCCAGCGAAAATCAATCGTTGTTGGTCGGGTGG 3329 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACA-CA---GTGTCGCTCGACT 41810 | || ||||||||| ||| ||| ||| |||| | || || || ||| | Sbjct 3330 GATGCCCTCCTTGTCTTGGATCTTTGTCTT----GACGTTATCAATGGTATCTGACGATT 3385 Query 41811 CCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||||| | ||| || || || || |||| ||||| || || || ||||| Sbjct 3386 CCACCTCTAACGTAATTGTCTTTCCAGTCAAAGTCTTAACAAAGATTTGCAT 3437 Score = 96.9 bits (106), Expect = 3e-15 Identities = 141/194 (73%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 41671 CTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 41730 |||||| |||||||| ||||| || ||||| || | || || | |||||| || ||||| Sbjct 3474 CTCCTTTTGAATGTTGTAGTCCGACAGGGTACGGCCATCCTCCAACTGCTTACCAGCGAA 3533 Query 41731 TATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCT-TCAACG 41789 || || || ||||| || | |||| || |||||||| ||| | || ||| | ||| Sbjct 3534 GATGAGACGTTGTTGATCAGGTGGAATGCCTTCCTTGTCT-TGAATCTT-GCTCTTTACG 3591 Query 41790 ACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTT 41848 | | | ||| || ||||| ||||||| || || || || || || || ||||| Sbjct 3592 TTGTCGATAGTATCAGATGACTCAACCTCCAAAGTGATTGTCTTTCCGGTAAGAGTCTTG 3651 Query 41849 ACGAAAATCTGCAT 41862 |||||||||||||| Sbjct 3652 ACGAAAATCTGCAT 3665 Score = 82.4 bits (90), Expect = 7e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 ||||| || ||||| | || ||||| || || ||||||||| ||||| |||||| Sbjct 3951 CCGCCACGAAGACGGAGGACGAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTC 4010 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | || || | || ||||| |||||||| || || |||| ||||||||||| | ||| Sbjct 4011 AAAGTACGACCATCCTCGAGTTGCTTGCCAGCAAAGATCAAACGCTGTTGGTCAGGAGGA 4070 Query 41756 ACGCTCTCCTTGTCCATGATTTT 41778 | | |||||| ||| ||| || Sbjct 4071 ATACCCTCCTTATCCTGGATCTT 4093 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462261554714000