Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rutstroemia_20sydowiana_20[genbank_20GCA_5F000812895.1_202014-12-31]
11,777 sequences; 51,994,176 total letters
Query= NC_000852.5
Length=330611
Score E
Sequences producing significant alignments: (Bits) Value
seq10338 129 1e-24
>seq10338
Length=29807
Score = 129 bits (142), Expect = 1e-24
Identities = 316/472 (67%), Gaps = 14/472 (3%)
Strand=Plus/Plus
Query 230173 TTTGCCGAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCGGGAGTTTC 230232
||||| | ||||||||||| | | |||||||||||| || | ||| | | |||
Sbjct 12984 TTTGCTCAACGTCTCGTCGCATTCGCTGCTGTTGAAGGTAT-CT-TCTTCAGTG-GTTCA 13040
Query 230233 TGCGCC---ATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAAC 230289
| |||| ||||| ||||| ||| ||| ||||| | || || | | || |||
Sbjct 13041 TTCGCCTCTATCTTCTGGCTCAAGAAGCGTGGTTTGATGGCCGGTCTTACTTTCTCCAAC 13100
Query 230290 GAGTTCATCAGTCGCGACGAGGGTCTCCATCAACAGTTCGGCGAGCTTATGTATTCAAAG 230349
||| ||||| || ||||||||||| ||| | |||| | ||| | | || |
Sbjct 13101 GAGCTCATCTCCCGTGACGAGGGTCTTCATACCGACTTCGCCTGCCTTCTCTTCTC---G 13157
Query 230350 CTCCAGAACAAGCTACCATT----CGAGACGGTCAAACAAATCATTACAGAAGCAGTTGA 230405
| | ||| | | ||| | || || ||| | |||| ||||| || |||
Sbjct 13158 CACTTGAAGCATCGCCCAAGTAAACAAGCCGTTCAGG-ATGTCATCACAGAGGCTGTTAC 13216
Query 230406 AAACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGCCTTATTGGCATGAACGCTGA 230465
|| || |||| ||| | || ||| |||||||| || ||||||||||| | ||
Sbjct 13217 AATTGAGCAGGAATTCTTGACCGAAGCTCTTCCATGTGCTCTCCTTGGCATGAACTCGGA 13276
Query 230466 ACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGA 230525
|| ||| ||| ||||| || ||||| || ||||| || || |||| |||||| | ||
Sbjct 13277 TCTGATGAAACAATACATTGAGTTCGTCGCAGACCGTCTTCTTCTTGCCCTTGGTAATGA 13336
Query 230526 GAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAA 230585
|| || ||| || | ||||| || | || ||||| |||||| || || ||
Sbjct 13337 AAAGGTTTACCGTTCCACCAACCCATTCGACTTCATGGAAAACATTTCTCTCGCTGGCAA 13396
Query 230586 GACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGTGATG 230637
||||||||||||||| |||||||| ||| || |||| | ||||||| |||
Sbjct 13397 GACCAACTTCTTCGAGAAGCGTGTTGCTGATTACCAGAAGGCTGGTGTTATG 13448
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1057664381961510
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |