Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20sydowiana_20[genbank_20GCA_5F000812895.1_202014-12-31] 11,777 sequences; 51,994,176 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq10338 129 1e-24 >seq10338 Length=29807 Score = 129 bits (142), Expect = 1e-24 Identities = 316/472 (67%), Gaps = 14/472 (3%) Strand=Plus/Plus Query 230173 TTTGCCGAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCGGGAGTTTC 230232 ||||| | ||||||||||| | | |||||||||||| || | ||| | | ||| Sbjct 12984 TTTGCTCAACGTCTCGTCGCATTCGCTGCTGTTGAAGGTAT-CT-TCTTCAGTG-GTTCA 13040 Query 230233 TGCGCC---ATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAAC 230289 | |||| ||||| ||||| ||| ||| ||||| | || || | | || ||| Sbjct 13041 TTCGCCTCTATCTTCTGGCTCAAGAAGCGTGGTTTGATGGCCGGTCTTACTTTCTCCAAC 13100 Query 230290 GAGTTCATCAGTCGCGACGAGGGTCTCCATCAACAGTTCGGCGAGCTTATGTATTCAAAG 230349 ||| ||||| || ||||||||||| ||| | |||| | ||| | | || | Sbjct 13101 GAGCTCATCTCCCGTGACGAGGGTCTTCATACCGACTTCGCCTGCCTTCTCTTCTC---G 13157 Query 230350 CTCCAGAACAAGCTACCATT----CGAGACGGTCAAACAAATCATTACAGAAGCAGTTGA 230405 | | ||| | | ||| | || || ||| | |||| ||||| || ||| Sbjct 13158 CACTTGAAGCATCGCCCAAGTAAACAAGCCGTTCAGG-ATGTCATCACAGAGGCTGTTAC 13216 Query 230406 AAACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGCCTTATTGGCATGAACGCTGA 230465 || || |||| ||| | || ||| |||||||| || ||||||||||| | || Sbjct 13217 AATTGAGCAGGAATTCTTGACCGAAGCTCTTCCATGTGCTCTCCTTGGCATGAACTCGGA 13276 Query 230466 ACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGA 230525 || ||| ||| ||||| || ||||| || ||||| || || |||| |||||| | || Sbjct 13277 TCTGATGAAACAATACATTGAGTTCGTCGCAGACCGTCTTCTTCTTGCCCTTGGTAATGA 13336 Query 230526 GAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAA 230585 || || ||| || | ||||| || | || ||||| |||||| || || || Sbjct 13337 AAAGGTTTACCGTTCCACCAACCCATTCGACTTCATGGAAAACATTTCTCTCGCTGGCAA 13396 Query 230586 GACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGTGATG 230637 ||||||||||||||| |||||||| ||| || |||| | ||||||| ||| Sbjct 13397 GACCAACTTCTTCGAGAAGCGTGTTGCTGATTACCAGAAGGCTGGTGTTATG 13448 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057664381961510