Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rutstroemia_20sydowiana_20[genbank_20GCA_5F000812895.1_202014-12-31]
11,777 sequences; 51,994,176 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
seq10763 396 3e-105
seq10338 136 5e-27
>seq10763
Length=10051
Score = 396 bits (438), Expect = 3e-105
Identities = 1331/2060 (65%), Gaps = 39/2060 (2%)
Strand=Plus/Minus
Query 52808 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 52867
||||||||||| || || || || | | ||||| |||||||||||||| || || |||
Sbjct 6161 GTGAATTGAATTGGTGCCGAAGCAGCCATAGTACGGAGATAGTACATTCCAGTCTTGAGA 6102
Query 52868 CCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATA 52927
|| | ||||||| |||||||| || | ||| | || || ||
Sbjct 6101 CCCAATTTCCATCCAGCGAAATGCATGGAAGTGATCTTGCCCATTGTAGGGTCCTTCATG 6042
Query 52928 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 52987
|| || ||||| |||||| |||||| ||||| || || | |||||| ||||||| |
Sbjct 6041 TGAATGTTCATCGATTGAGATTGATCAATGAAAGCACCACGGTCTGCGGCCATTTGAACA 5982
Query 52988 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 53047
|| | ||| | |||||||||| || || || | ||||| || |||||| |
Sbjct 5981 ATGTTTCGTTGAGAGATTTCCCAAACGGTCTTGTAGAGAGCTTTAATCTCGGCTGGAATG 5922
Query 53048 TTTG---TATTCTGAATAGATCCACCATCTACCATAATCCTATTCTTGATCTCATCATTC 53104
|| | |||| ||||| || |||||||| | || || | |||||| || | |||| |
Sbjct 5921 TTGGGAATATTTTGAATGGAACCACCATCAGCGATGATACGATTCTTCATGTTATCAGAC 5862
Query 53105 CATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCA 53164
|| | | | ||| ||| | |||| || || ||||| ||||| || || ||
Sbjct 5861 CAAAGTCCCATGTCGACCAAATCCTTAAGAAGCCATGGGTTAACGACTTGGAACTCACCG 5802
Query 53165 GACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCC 53224
| ||| || | || | |||||| || || || || || | | | ||||| ||
Sbjct 5801 GCCAACACACGGCGTGAGTAAATGTTGGAAGTGTATGGCTCGAAACATTCATTGAAACCG 5742
Query 53225 AAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCG 53284
| |||||||| || ||||| |||||||| || || | |||||||| | | |||
Sbjct 5741 AGAATTTGAGATGTGCTGGCAGTTGGCATAGGAGCAACAAGCAAACTATTCCGGATACC- 5683
Query 53285 TATGTTC--TGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNN 53342
||||| |||| | || |||| ||||||| ||||||||||| || |||
Sbjct 5682 -ATGTTGCTTGATAGATTGCTTGAGAGAATCCCAATCCCAAAGATCCGTAGGAGTAACAC 5624
Query 53343 NNNNNNNNNNNNNTTGTAGAATACCGTT----ACTGGCGTACGATCCTACATATGTATCG 53398
||| || ||| || ||||| | ||||| |||||| |||
Sbjct 5623 CCCACATATCATATTGAAGCTCACCCTTGGAGACTGGAG----ATCCTTCATATGACTCG 5568
Query 53399 TATGGTCCTTCCTTCTCAGCTAGTTCA-CAACTCGCCTCTAATGCACCGTAATAAATGGT 53457
||||| ||| | || |||| | | || | || || ||||||| || |||||
Sbjct 5567 TATGGGCCTAATTCCTTGGCTATCTGAACAGATGAAGTCAAA-GCACCGTGGTAGATGGT 5509
Query 53458 TTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAG 53517
|| ||||| | | || |||| | ||||| | ||| ||||| ||| ||||
Sbjct 5508 CTCAAAGATTTGGATGTTGAGATGCTTCGCTTCGGGTGAATCGAATGG-TAAACGGAGAG 5450
Query 53518 AATA-AACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAG 53576
| || || || || | ||||||||||||| | | ||||||| ||| | |||
Sbjct 5449 CCAAGAAGGCATCAGCAAGACCTTGAACACCAACAGCAATAGGTCGATGACGGAAATTGC 5390
Query 53577 AGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGGTTTCTGA 53636
|| |||||| | ||||| ||||| ||||| ||||| || || | ||||||||
Sbjct 5389 TTCTTCTGGCTTCTTCGACGGGATAGTAATTGATATCGATAATCTTGTTCAAGTTTCTGA 5330
Query 53637 CAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATTGTCCATC-----TATT-A 53690
||| |||| || || || | || || | |||||| | ||| || | || |
Sbjct 5329 CAACAACTTGAACGACCTCGTGAAGCTTTTGGAAATCATAAGTTCCCTCGGCCATGTTGA 5270
Query 53691 CAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCAT 53750
|||| | | |||||||| |||| |||||| || ||||||| || | | |
Sbjct 5269 CAAAGGTTGGGAGAGCAATAGAAGCCAAATTACAGCAAGCAACCTCATCAGGTGCAGAGT 5210
Query 53751 ATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTAC 53810
||| | || || ||||| | || | ||| || || | ||| | |||||| |
Sbjct 5209 ATTCGACGATTTCCGTGCACAAGTTGGAGCTGCGGATTGTGCCGAGATTCTTTTGATTGC 5150
Query 53811 TCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATT 53870
|||||||||| || ||||| || ||||| ||||| || | || || ||| |||| | |
Sbjct 5149 TCTTTTTGTTGCAAGCATCTTTGTAAAGCATGAAAGGGTTTCCTGTCTCAGTCTGTGCCT 5090
Query 53871 CTATAATCGCTTTCCAGACGACACGAGCCTTTAT-----TATAGATTTGTATCTCTTTTC 53925
| | || | | ||| | ||||||| || || | || || || ||||
Sbjct 5089 CGAGGATAGAATACCAAAGCTTTTGAGCCTTGATAGTCTTACGGCCTT-TACCTTGTTTC 5031
Query 53926 TCTTTCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGG 53985
|| ||| ||| | ||||||||| || || | |||| |||| |||||
Sbjct 5030 TC----GTAACCCTCATAAAGAGCTTCAAACTCATCACCATAGACATCAGCCAAGCCAGG 4975
Query 53986 ACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAG 54045
|||||| | || ||||| | | ||| ||||||| | | || || ||||| |||||
Sbjct 4974 ACATTCGTTGGGGCACATGAGTGTCCAATCTCCGTTCTTTTCAACACGCTTCATGAAGAG 4915
Query 54046 ATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATT 54105
||| |||||||| || || ||| || || | | || | |||||| ||||| |||
Sbjct 4914 ATCTGGAATCCAGAGGGCATAAAAGAGGTCGCGTGCTCGAACTTCCTCCTTTCCATGATT 4855
Query 54106 CTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCAT 54165
|||| ||||| | ||| | | | ||| | |||||| ||||| | ||| |||| |
Sbjct 4854 CTTTCGGAGATCCAAAAACTCAAAGACATCCGCATGCCATGGTTCAAGGTAGATGGCGAA 4795
Query 54166 AACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCT 54225
| ||||| || ||||| || || ||||| | ||||||||||| || || ||||||
Sbjct 4794 TGCACCAGGGCGCTTGTTACCACCTTGATCGACATATCTAGCGGTATTGTTGAAAACTCG 4735
Query 54226 CAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGC 54285
| ||| |||| ||||| || || ||||| || || | || || ||| | ||
Sbjct 4734 AAGCATAGGAACGATACCGTTAGAATTTCCATTTGTGCCAGCAATGTATGCACCAGTAGC 4675
Query 54286 ACGAATATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCG 54345
|||||| | || ||||| || || || || | ||||| || | || ||
Sbjct 4674 ACGAATTCTGTGGATGTTGAGACCAATACCTCCAGCATTCTTAGAAATCATGGCACAAAT 4615
Query 54346 TTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCT 54405
|| || |||||||| || || || |||||||| ||| |||||| || || || ||
Sbjct 4614 CTTCAAAGTATCATAAATTCCATCAATACTATCCTCCTTCATGTCAATGAGGAAGCATGA 4555
Query 54406 AGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCA 54465
||| | |||| | || ||||| || | || ||||||||||| ||||| |
Sbjct 4554 AGAAAGTTGGGCTTGTGGTGTACCCGCGGAGAAGAGTGTTGGAGAAGCGTGTGTAAAGTA 4495
Query 54466 TTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATC-CCATTGATGAATTC 54524
||| | || | || ||||| || || || || || ||||| || | ||||| |
Sbjct 4494 TTTGTTGGACATTAAGTTGTAGGTTTCAATGGCGCTCTCGATATCATCACCG-TGAATAC 4436
Query 54525 CTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCA 54584
| || || |||||||| | ||| || || || | |||| | | || | | |
Sbjct 4435 CAACGGCAACACGCATAATCATTTGTTGTGGACGTTCAGCAACTTTTCCATCGAGGCGGA 4376
Query 54585 GCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGT 54644
| | ||| ||| | || | ||| || || || || || | ||| |||||||| ||||
Sbjct 4375 GGAGGTATGATCTCTCAAGAGTCTTGAATCCGAAGTATTGGTAGTTGAAGTCTCGATCGT 4316
Query 54645 AAATAATAACTGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCATGGTAATACTTG 54704
||| ||| | ||||| |||| ||| || | | |||| |||| ||| | ||||
Sbjct 4315 AAACGATAGCAGAGTTAAGTTCTGCCTCATGTCTCATAAC-ACATTCATATGTTTCCTTG 4257
Query 54705 -AAATAATCGGAGAATGTTTCCCATTTTTAGGATTGACATAGTTAAATAAATCCTTCATC 54763
||| || ||||| | | | |||||||| | || |||| ||| || | ||
Sbjct 4256 CTAATCATGGGAGATTTTGTACCATTTTTGGTGTTCGTGTAGTGGTATAGGTCACTGATG 4197
Query 54764 ACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCT 54823
|| | ||| |||| || |||| ||||| ||||| || || || || | ||| |||
Sbjct 4196 ACATGCGAGAATTGTTTCTTGGTTTGCTTGTGGAGATTGGAAACTGCAATACGAGCAGCT 4137
Query 54824 AGAATGGCATAATCCGGATG 54843
| ||||||||||| |||||
Sbjct 4136 AAGATGGCATAATCGGGATG 4117
>seq10338
Length=29807
Score = 136 bits (150), Expect = 5e-27
Identities = 355/536 (66%), Gaps = 13/536 (2%)
Strand=Plus/Minus
Query 23831 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTC 23890
|||||| || || ||||| ||| | ||||| || ||||| || || || || || |
Sbjct 13448 CATAACACCAGCCTTCTGGTAATCAGCAACACGCTTCTCGAAGAAGTTGGTCTTGCCAGC 13389
Query 23891 TAATGATATATTTTCCATGAAATCGGATGGATTGGT--AACATTATAGATTCTTTTAAAT 23948
| || || ||||||||||| ||| |||| ||||| ||| || | ||||| | |
Sbjct 13388 GAGAGAAATGTTTTCCATGAAGTCGAATGGGTTGGTGGAACGGTAAAC---CTTTTCATT 13332
Query 23949 CCCAATT-CAGAAATCAATCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACA 24007
|||| || || | | |||||||| ||||| || ||| |||||||| || |
Sbjct 13331 ACCAAGGGCAAGAAGAAGACGGTCTGCGACGAACTCAATGTATTGTTTCATCAGATCCGA 13272
Query 24008 ATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGAC 24067
||||| || | || | ||||||||| | || | ||||| || ||||| | ||
Sbjct 13271 GTTCATGCCAAGGAGAGCACATGGAAGAGCTTCGGTCAAGAATTCCTGCTCAATTGTAAC 13212
Query 24068 CGCGTCTGTTATAATAGATCTT--ACTGTTTCTTCACTCGGTGGATACAATAAATGTTTA 24125
|| ||||| || | | || | || | || || ||| || ||| | || ||
Sbjct 13211 AGCCTCTGTGATGACA--TCCTGAACGGCTTGTTTACTTGGGCGATGCTTCAAGTGCGAG 13154
Query 24126 AACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAA 24185
|| | | || ||||| ||| || ||||||||||| | || | ||||||||
Sbjct 13153 AAGAGAAGGCAGGCGAAGTCGGTATGAAGACCCTCGTCACGGGAGATGAGCTCGTTGGAG 13094
Query 24186 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCA 24245
|| || || |||| ||| | |||||||| || ||||| || || || || ||||| |||
Sbjct 13093 AAAGTAAGACCGGCCATCAAACCACGCTTCTTGAGCCAGAAGATAGAGGCGAATGAACCA 13034
Query 24246 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATA---ACCGGCG 24302
||||| || ||||| || || || || || | || | || || | | |
Sbjct 13033 CTGAAGAAGATACCTTCAACAGCAGCGAATGCGACGAGACGTTGAGCAAATGTAGATTCT 12974
Query 24303 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGT 24358
|||| || ||||| | |||||||||||||||||| || | |||||| | |||
Sbjct 12973 TTGTCTTGGATCCATCTAACAGCCCAATCGGCCTTCTTCTTAATACAAGGGACTGT 12918
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 593634196758960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |