Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20sydowiana_20[genbank_20GCA_5F000812895.1_202014-12-31] 11,777 sequences; 51,994,176 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq10763 396 3e-105 seq10338 136 5e-27 >seq10763 Length=10051 Score = 396 bits (438), Expect = 3e-105 Identities = 1331/2060 (65%), Gaps = 39/2060 (2%) Strand=Plus/Minus Query 52808 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 52867 ||||||||||| || || || || | | ||||| |||||||||||||| || || ||| Sbjct 6161 GTGAATTGAATTGGTGCCGAAGCAGCCATAGTACGGAGATAGTACATTCCAGTCTTGAGA 6102 Query 52868 CCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATA 52927 || | ||||||| |||||||| || | ||| | || || || Sbjct 6101 CCCAATTTCCATCCAGCGAAATGCATGGAAGTGATCTTGCCCATTGTAGGGTCCTTCATG 6042 Query 52928 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 52987 || || ||||| |||||| |||||| ||||| || || | |||||| ||||||| | Sbjct 6041 TGAATGTTCATCGATTGAGATTGATCAATGAAAGCACCACGGTCTGCGGCCATTTGAACA 5982 Query 52988 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 53047 || | ||| | |||||||||| || || || | ||||| || |||||| | Sbjct 5981 ATGTTTCGTTGAGAGATTTCCCAAACGGTCTTGTAGAGAGCTTTAATCTCGGCTGGAATG 5922 Query 53048 TTTG---TATTCTGAATAGATCCACCATCTACCATAATCCTATTCTTGATCTCATCATTC 53104 || | |||| ||||| || |||||||| | || || | |||||| || | |||| | Sbjct 5921 TTGGGAATATTTTGAATGGAACCACCATCAGCGATGATACGATTCTTCATGTTATCAGAC 5862 Query 53105 CATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCA 53164 || | | | ||| ||| | |||| || || ||||| ||||| || || || Sbjct 5861 CAAAGTCCCATGTCGACCAAATCCTTAAGAAGCCATGGGTTAACGACTTGGAACTCACCG 5802 Query 53165 GACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCC 53224 | ||| || | || | |||||| || || || || || | | | ||||| || Sbjct 5801 GCCAACACACGGCGTGAGTAAATGTTGGAAGTGTATGGCTCGAAACATTCATTGAAACCG 5742 Query 53225 AAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCG 53284 | |||||||| || ||||| |||||||| || || | |||||||| | | ||| Sbjct 5741 AGAATTTGAGATGTGCTGGCAGTTGGCATAGGAGCAACAAGCAAACTATTCCGGATACC- 5683 Query 53285 TATGTTC--TGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNN 53342 ||||| |||| | || |||| ||||||| ||||||||||| || ||| Sbjct 5682 -ATGTTGCTTGATAGATTGCTTGAGAGAATCCCAATCCCAAAGATCCGTAGGAGTAACAC 5624 Query 53343 NNNNNNNNNNNNNTTGTAGAATACCGTT----ACTGGCGTACGATCCTACATATGTATCG 53398 ||| || ||| || ||||| | ||||| |||||| ||| Sbjct 5623 CCCACATATCATATTGAAGCTCACCCTTGGAGACTGGAG----ATCCTTCATATGACTCG 5568 Query 53399 TATGGTCCTTCCTTCTCAGCTAGTTCA-CAACTCGCCTCTAATGCACCGTAATAAATGGT 53457 ||||| ||| | || |||| | | || | || || ||||||| || ||||| Sbjct 5567 TATGGGCCTAATTCCTTGGCTATCTGAACAGATGAAGTCAAA-GCACCGTGGTAGATGGT 5509 Query 53458 TTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAG 53517 || ||||| | | || |||| | ||||| | ||| ||||| ||| |||| Sbjct 5508 CTCAAAGATTTGGATGTTGAGATGCTTCGCTTCGGGTGAATCGAATGG-TAAACGGAGAG 5450 Query 53518 AATA-AACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAG 53576 | || || || || | ||||||||||||| | | ||||||| ||| | ||| Sbjct 5449 CCAAGAAGGCATCAGCAAGACCTTGAACACCAACAGCAATAGGTCGATGACGGAAATTGC 5390 Query 53577 AGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGGTTTCTGA 53636 || |||||| | ||||| ||||| ||||| ||||| || || | |||||||| Sbjct 5389 TTCTTCTGGCTTCTTCGACGGGATAGTAATTGATATCGATAATCTTGTTCAAGTTTCTGA 5330 Query 53637 CAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATTGTCCATC-----TATT-A 53690 ||| |||| || || || | || || | |||||| | ||| || | || | Sbjct 5329 CAACAACTTGAACGACCTCGTGAAGCTTTTGGAAATCATAAGTTCCCTCGGCCATGTTGA 5270 Query 53691 CAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCAT 53750 |||| | | |||||||| |||| |||||| || ||||||| || | | | Sbjct 5269 CAAAGGTTGGGAGAGCAATAGAAGCCAAATTACAGCAAGCAACCTCATCAGGTGCAGAGT 5210 Query 53751 ATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTAC 53810 ||| | || || ||||| | || | ||| || || | ||| | |||||| | Sbjct 5209 ATTCGACGATTTCCGTGCACAAGTTGGAGCTGCGGATTGTGCCGAGATTCTTTTGATTGC 5150 Query 53811 TCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATT 53870 |||||||||| || ||||| || ||||| ||||| || | || || ||| |||| | | Sbjct 5149 TCTTTTTGTTGCAAGCATCTTTGTAAAGCATGAAAGGGTTTCCTGTCTCAGTCTGTGCCT 5090 Query 53871 CTATAATCGCTTTCCAGACGACACGAGCCTTTAT-----TATAGATTTGTATCTCTTTTC 53925 | | || | | ||| | ||||||| || || | || || || |||| Sbjct 5089 CGAGGATAGAATACCAAAGCTTTTGAGCCTTGATAGTCTTACGGCCTT-TACCTTGTTTC 5031 Query 53926 TCTTTCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGG 53985 || ||| ||| | ||||||||| || || | |||| |||| ||||| Sbjct 5030 TC----GTAACCCTCATAAAGAGCTTCAAACTCATCACCATAGACATCAGCCAAGCCAGG 4975 Query 53986 ACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAG 54045 |||||| | || ||||| | | ||| ||||||| | | || || ||||| ||||| Sbjct 4974 ACATTCGTTGGGGCACATGAGTGTCCAATCTCCGTTCTTTTCAACACGCTTCATGAAGAG 4915 Query 54046 ATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATT 54105 ||| |||||||| || || ||| || || | | || | |||||| ||||| ||| Sbjct 4914 ATCTGGAATCCAGAGGGCATAAAAGAGGTCGCGTGCTCGAACTTCCTCCTTTCCATGATT 4855 Query 54106 CTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCAT 54165 |||| ||||| | ||| | | | ||| | |||||| ||||| | ||| |||| | Sbjct 4854 CTTTCGGAGATCCAAAAACTCAAAGACATCCGCATGCCATGGTTCAAGGTAGATGGCGAA 4795 Query 54166 AACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCT 54225 | ||||| || ||||| || || ||||| | ||||||||||| || || |||||| Sbjct 4794 TGCACCAGGGCGCTTGTTACCACCTTGATCGACATATCTAGCGGTATTGTTGAAAACTCG 4735 Query 54226 CAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGC 54285 | ||| |||| ||||| || || ||||| || || | || || ||| | || Sbjct 4734 AAGCATAGGAACGATACCGTTAGAATTTCCATTTGTGCCAGCAATGTATGCACCAGTAGC 4675 Query 54286 ACGAATATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCG 54345 |||||| | || ||||| || || || || | ||||| || | || || Sbjct 4674 ACGAATTCTGTGGATGTTGAGACCAATACCTCCAGCATTCTTAGAAATCATGGCACAAAT 4615 Query 54346 TTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCT 54405 || || |||||||| || || || |||||||| ||| |||||| || || || || Sbjct 4614 CTTCAAAGTATCATAAATTCCATCAATACTATCCTCCTTCATGTCAATGAGGAAGCATGA 4555 Query 54406 AGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCA 54465 ||| | |||| | || ||||| || | || ||||||||||| ||||| | Sbjct 4554 AGAAAGTTGGGCTTGTGGTGTACCCGCGGAGAAGAGTGTTGGAGAAGCGTGTGTAAAGTA 4495 Query 54466 TTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATC-CCATTGATGAATTC 54524 ||| | || | || ||||| || || || || || ||||| || | ||||| | Sbjct 4494 TTTGTTGGACATTAAGTTGTAGGTTTCAATGGCGCTCTCGATATCATCACCG-TGAATAC 4436 Query 54525 CTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCA 54584 | || || |||||||| | ||| || || || | |||| | | || | | | Sbjct 4435 CAACGGCAACACGCATAATCATTTGTTGTGGACGTTCAGCAACTTTTCCATCGAGGCGGA 4376 Query 54585 GCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGT 54644 | | ||| ||| | || | ||| || || || || || | ||| |||||||| |||| Sbjct 4375 GGAGGTATGATCTCTCAAGAGTCTTGAATCCGAAGTATTGGTAGTTGAAGTCTCGATCGT 4316 Query 54645 AAATAATAACTGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCATGGTAATACTTG 54704 ||| ||| | ||||| |||| ||| || | | |||| |||| ||| | |||| Sbjct 4315 AAACGATAGCAGAGTTAAGTTCTGCCTCATGTCTCATAAC-ACATTCATATGTTTCCTTG 4257 Query 54705 -AAATAATCGGAGAATGTTTCCCATTTTTAGGATTGACATAGTTAAATAAATCCTTCATC 54763 ||| || ||||| | | | |||||||| | || |||| ||| || | || Sbjct 4256 CTAATCATGGGAGATTTTGTACCATTTTTGGTGTTCGTGTAGTGGTATAGGTCACTGATG 4197 Query 54764 ACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCT 54823 || | ||| |||| || |||| ||||| ||||| || || || || | ||| ||| Sbjct 4196 ACATGCGAGAATTGTTTCTTGGTTTGCTTGTGGAGATTGGAAACTGCAATACGAGCAGCT 4137 Query 54824 AGAATGGCATAATCCGGATG 54843 | ||||||||||| ||||| Sbjct 4136 AAGATGGCATAATCGGGATG 4117 >seq10338 Length=29807 Score = 136 bits (150), Expect = 5e-27 Identities = 355/536 (66%), Gaps = 13/536 (2%) Strand=Plus/Minus Query 23831 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTC 23890 |||||| || || ||||| ||| | ||||| || ||||| || || || || || | Sbjct 13448 CATAACACCAGCCTTCTGGTAATCAGCAACACGCTTCTCGAAGAAGTTGGTCTTGCCAGC 13389 Query 23891 TAATGATATATTTTCCATGAAATCGGATGGATTGGT--AACATTATAGATTCTTTTAAAT 23948 | || || ||||||||||| ||| |||| ||||| ||| || | ||||| | | Sbjct 13388 GAGAGAAATGTTTTCCATGAAGTCGAATGGGTTGGTGGAACGGTAAAC---CTTTTCATT 13332 Query 23949 CCCAATT-CAGAAATCAATCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACA 24007 |||| || || | | |||||||| ||||| || ||| |||||||| || | Sbjct 13331 ACCAAGGGCAAGAAGAAGACGGTCTGCGACGAACTCAATGTATTGTTTCATCAGATCCGA 13272 Query 24008 ATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGAC 24067 ||||| || | || | ||||||||| | || | ||||| || ||||| | || Sbjct 13271 GTTCATGCCAAGGAGAGCACATGGAAGAGCTTCGGTCAAGAATTCCTGCTCAATTGTAAC 13212 Query 24068 CGCGTCTGTTATAATAGATCTT--ACTGTTTCTTCACTCGGTGGATACAATAAATGTTTA 24125 || ||||| || | | || | || | || || ||| || ||| | || || Sbjct 13211 AGCCTCTGTGATGACA--TCCTGAACGGCTTGTTTACTTGGGCGATGCTTCAAGTGCGAG 13154 Query 24126 AACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAA 24185 || | | || ||||| ||| || ||||||||||| | || | |||||||| Sbjct 13153 AAGAGAAGGCAGGCGAAGTCGGTATGAAGACCCTCGTCACGGGAGATGAGCTCGTTGGAG 13094 Query 24186 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCA 24245 || || || |||| ||| | |||||||| || ||||| || || || || ||||| ||| Sbjct 13093 AAAGTAAGACCGGCCATCAAACCACGCTTCTTGAGCCAGAAGATAGAGGCGAATGAACCA 13034 Query 24246 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATA---ACCGGCG 24302 ||||| || ||||| || || || || || | || | || || | | | Sbjct 13033 CTGAAGAAGATACCTTCAACAGCAGCGAATGCGACGAGACGTTGAGCAAATGTAGATTCT 12974 Query 24303 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGT 24358 |||| || ||||| | |||||||||||||||||| || | |||||| | ||| Sbjct 12973 TTGTCTTGGATCCATCTAACAGCCCAATCGGCCTTCTTCTTAATACAAGGGACTGT 12918 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593634196758960