Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20sydowiana_20[genbank_20GCA_5F000812895.1_202014-12-31] 11,777 sequences; 51,994,176 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq10338 138 1e-27 seq655 95.1 1e-14 >seq10338 Length=29807 Score = 138 bits (152), Expect = 1e-27 Identities = 202/285 (71%), Gaps = 3/285 (1%) Strand=Plus/Plus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| ||||| ||||| || |||||||||| || ||| | ||| || Sbjct 12536 ATTTGGCAGATGTACAAGAAGGCTGAGGCATCTTTCTGGACCGCAGAAGAGATCGACTTG 12595 Query 116696 TCCAAGGACACGAGCGACTGGGAGCGCT---TGAACGACAACGAGCGCCATTTCATCAAG 116752 || ||||| ||||||| | | | || ||| | ||||| | ||| || Sbjct 12596 TCAAAGGATCTTCACGACTGGAACAACAGACTCAATGACGATGAGCGTTACTTCGTCTCT 12655 Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812 ||||| || || || |||||||| || || || ||||| ||||| || ||||| ||| Sbjct 12656 CACGTCCTCGCATTCTTCGCCGCATCTGATGGAATTGTCAATGAGAACCTTGTCGAACGT 12715 Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATG 116872 ||| | ||||| ||| | | || || || ||||||||||| || |||||| ||| Sbjct 12716 TTCAGTGGTGAGGTCCAGATCCCTGAAGCACGATGCTTCTACGGTTTCCAGATCATGATG 12775 Query 116873 GAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC 116917 |||||| | |||||||||| || || |||||||| || ||| Sbjct 12776 GAGAACATTCACTCGGAAACATACTCTCTTCTCATCGATACATAC 12820 Score = 136 bits (150), Expect = 4e-27 Identities = 267/390 (68%), Gaps = 10/390 (3%) Strand=Plus/Plus Query 116982 AGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCC 117041 |||||||||| ||||| | | |||||| | || ||| | | || | | || | Sbjct 12937 AGAAGGCCGATTGGGCTGTTAGATGGATCCAAGACAAAGAATCTACATTTGCTCAACGTC 12996 Query 117042 TGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTT 117101 | || || ||||| || || || || ||||||| || |||||| | || || | Sbjct 12997 TCGTCGCATTCGCTGCTGTTGAAGGTATCTTCTTCAGTGGTTCATTCGCCTCTATCTTCT 13056 Query 117102 GGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGG 117161 |||||||||| || || | ||| |||| || |||||| |||||||||||||||| | | Sbjct 13057 GGCTCAAGAAGCGTGGTTTGATGGCCGGTCTTACTTTCTCCAACGAGCTCATCTCCCGTG 13116 Query 117162 ACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGA 117221 |||||||||| ||| |||||| ||||| | || ||| ||| ||| ||| || || | Sbjct 13117 ACGAGGGTCTTCATACCGACTTCGCCTGCCTTCTCTTCTCGCACTTGAAGCATCGCCCAA 13176 Query 117222 G----CGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTC 117277 | | | || ||| ||| || |||| || || || | || |||||| ||| Sbjct 13177 GTAAACAAGCCG---TTCA-GGATGTCATCACAGAGGCTGTTACAATTGAGCAGGAATTC 13232 Query 117278 CTCACCGAAGCGCTGCC-GGTGCGTCTGCTGGGACTCAATTGCGAAACGATGTCGCAATA 117336 | |||||||| || || |||| ||| || || | || | || |||| ||||| Sbjct 13233 TTGACCGAAGCTCTTCCATGTGC-TCTCCTTGGCATGAACTCGGATCTGATGAAACAATA 13291 Query 117337 CATCGAGTTCGTCGCCGACAGGCTGCTGCT 117366 ||| ||||||||||| ||| | || || || Sbjct 13292 CATTGAGTTCGTCGCAGACCGTCTTCTTCT 13321 >seq655 Length=7676 Score = 95.1 bits (104), Expect = 1e-14 Identities = 132/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 40714 ACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCAAACGCTCAAGGAA 40773 || ||||| ||||||||| | || || ||| | |||||| | | | ||||| Sbjct 4186 ACCGGCAAGACCATCACCCTTGAGGTTGAATCTTCCGACACTATCGACAATGTCAAGACC 4127 Query 40774 AAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAA 40833 || |||| || || ||||| ||||| | ||||| || || | |||| || ||||| Sbjct 4126 AAGATTCAGGATAAGGAGGGTATCCCTCCTGACCAACAGCGTTTGATCTTTGCTGGCAAG 4067 Query 40834 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCAT 40893 || || || || | |||||||| |||||||||||||||||||||| | || || ||| Sbjct 4066 CAACTTGAGGATGGCCGCACCCTTTCCGACTACAACATCCAGAAGGAGTCTACTCTCCAT 4007 Query 40894 CTAGT 40898 || || Sbjct 4006 CTCGT 4002 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || || || || ||||| | || ||||| | | Sbjct 3697 ATGCAGATCTTCGTCAAGACCCTTACTGGAAAGACAATCACATTAGAGGTCGAGTCGTCT 3638 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | | ||| || |||| || || ||||||||||| | || ||| Sbjct 3637 GATACCATCGATAATGTGAAGACTAAGATTCAAGATAAGGAGGGCATCCCACCTGATCAG 3578 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| ||||| | ||| || || ||| |||| || | |||||| | ||| |||||| Sbjct 3577 CAACGTCTCATTTTCGCTGGTAAGCAGTTGGAGGATGGCCGCACCTTATCCGATTACAAC 3518 Query 40870 ATCCAGAAGGA 40880 ||||| ||||| Sbjct 3517 ATCCAAAAGGA 3507 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515143353293520