Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rutstroemia_20sydowiana_20[genbank_20GCA_5F000812895.1_202014-12-31]
11,777 sequences; 51,994,176 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq10338 138 1e-27
seq655 95.1 1e-14
>seq10338
Length=29807
Score = 138 bits (152), Expect = 1e-27
Identities = 202/285 (71%), Gaps = 3/285 (1%)
Strand=Plus/Plus
Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695
|| |||| |||||||| ||||| ||||| || |||||||||| || ||| | ||| ||
Sbjct 12536 ATTTGGCAGATGTACAAGAAGGCTGAGGCATCTTTCTGGACCGCAGAAGAGATCGACTTG 12595
Query 116696 TCCAAGGACACGAGCGACTGGGAGCGCT---TGAACGACAACGAGCGCCATTTCATCAAG 116752
|| ||||| ||||||| | | | || ||| | ||||| | ||| ||
Sbjct 12596 TCAAAGGATCTTCACGACTGGAACAACAGACTCAATGACGATGAGCGTTACTTCGTCTCT 12655
Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812
||||| || || || |||||||| || || || ||||| ||||| || ||||| |||
Sbjct 12656 CACGTCCTCGCATTCTTCGCCGCATCTGATGGAATTGTCAATGAGAACCTTGTCGAACGT 12715
Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATG 116872
||| | ||||| ||| | | || || || ||||||||||| || |||||| |||
Sbjct 12716 TTCAGTGGTGAGGTCCAGATCCCTGAAGCACGATGCTTCTACGGTTTCCAGATCATGATG 12775
Query 116873 GAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC 116917
|||||| | |||||||||| || || |||||||| || |||
Sbjct 12776 GAGAACATTCACTCGGAAACATACTCTCTTCTCATCGATACATAC 12820
Score = 136 bits (150), Expect = 4e-27
Identities = 267/390 (68%), Gaps = 10/390 (3%)
Strand=Plus/Plus
Query 116982 AGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCC 117041
|||||||||| ||||| | | |||||| | || ||| | | || | | || |
Sbjct 12937 AGAAGGCCGATTGGGCTGTTAGATGGATCCAAGACAAAGAATCTACATTTGCTCAACGTC 12996
Query 117042 TGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTT 117101
| || || ||||| || || || || ||||||| || |||||| | || || |
Sbjct 12997 TCGTCGCATTCGCTGCTGTTGAAGGTATCTTCTTCAGTGGTTCATTCGCCTCTATCTTCT 13056
Query 117102 GGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGG 117161
|||||||||| || || | ||| |||| || |||||| |||||||||||||||| | |
Sbjct 13057 GGCTCAAGAAGCGTGGTTTGATGGCCGGTCTTACTTTCTCCAACGAGCTCATCTCCCGTG 13116
Query 117162 ACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGA 117221
|||||||||| ||| |||||| ||||| | || ||| ||| ||| ||| || || |
Sbjct 13117 ACGAGGGTCTTCATACCGACTTCGCCTGCCTTCTCTTCTCGCACTTGAAGCATCGCCCAA 13176
Query 117222 G----CGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTC 117277
| | | || ||| ||| || |||| || || || | || |||||| |||
Sbjct 13177 GTAAACAAGCCG---TTCA-GGATGTCATCACAGAGGCTGTTACAATTGAGCAGGAATTC 13232
Query 117278 CTCACCGAAGCGCTGCC-GGTGCGTCTGCTGGGACTCAATTGCGAAACGATGTCGCAATA 117336
| |||||||| || || |||| ||| || || | || | || |||| |||||
Sbjct 13233 TTGACCGAAGCTCTTCCATGTGC-TCTCCTTGGCATGAACTCGGATCTGATGAAACAATA 13291
Query 117337 CATCGAGTTCGTCGCCGACAGGCTGCTGCT 117366
||| ||||||||||| ||| | || || ||
Sbjct 13292 CATTGAGTTCGTCGCAGACCGTCTTCTTCT 13321
>seq655
Length=7676
Score = 95.1 bits (104), Expect = 1e-14
Identities = 132/185 (71%), Gaps = 0/185 (0%)
Strand=Plus/Minus
Query 40714 ACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCAAACGCTCAAGGAA 40773
|| ||||| ||||||||| | || || ||| | |||||| | | | |||||
Sbjct 4186 ACCGGCAAGACCATCACCCTTGAGGTTGAATCTTCCGACACTATCGACAATGTCAAGACC 4127
Query 40774 AAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAA 40833
|| |||| || || ||||| ||||| | ||||| || || | |||| || |||||
Sbjct 4126 AAGATTCAGGATAAGGAGGGTATCCCTCCTGACCAACAGCGTTTGATCTTTGCTGGCAAG 4067
Query 40834 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCAT 40893
|| || || || | |||||||| |||||||||||||||||||||| | || || |||
Sbjct 4066 CAACTTGAGGATGGCCGCACCCTTTCCGACTACAACATCCAGAAGGAGTCTACTCTCCAT 4007
Query 40894 CTAGT 40898
|| ||
Sbjct 4006 CTCGT 4002
Score = 84.2 bits (92), Expect = 2e-11
Identities = 133/191 (70%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || || || || || || ||||| | || ||||| | |
Sbjct 3697 ATGCAGATCTTCGTCAAGACCCTTACTGGAAAGACAATCACATTAGAGGTCGAGTCGTCT 3638
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|| | | | | | | ||| || |||| || || ||||||||||| | || |||
Sbjct 3637 GATACCATCGATAATGTGAAGACTAAGATTCAAGATAAGGAGGGCATCCCACCTGATCAG 3578
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
||||| ||||| | ||| || || ||| |||| || | |||||| | ||| ||||||
Sbjct 3577 CAACGTCTCATTTTCGCTGGTAAGCAGTTGGAGGATGGCCGCACCTTATCCGATTACAAC 3518
Query 40870 ATCCAGAAGGA 40880
||||| |||||
Sbjct 3517 ATCCAAAAGGA 3507
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515143353293520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |