Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rutstroemia_20sydowiana_20[genbank_20GCA_5F000812895.1_202014-12-31]
11,777 sequences; 51,994,176 total letters
Query= NC_001993.1
Length=236120
Score E
Sequences producing significant alignments: (Bits) Value
seq655 118 2e-21
seq9952 96.9 5e-15
>seq655
Length=7676
Score = 118 bits (130), Expect = 2e-21
Identities = 164/230 (71%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598
||||| || || | ||||| || || || || || || || ||||| | || | |
Sbjct 3697 ATGCAGATCTTCGTCAAGACCCTTACTGGAAAGACAATCACATTAGAGGTCGAGTCGTCT 3638
Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658
||||| || |||| | || || ||||||||||| || || || |||||||||||
Sbjct 3637 GATACCATCGATAATGTGAAGACTAAGATTCAAGATAAGGAGGGCATCCCACCTGATCAG 3578
Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718
||| | || ||||| || || || || || |||||| | || || ||| ||||| ||
Sbjct 3577 CAACGTCTCATTTTCGCTGGTAAGCAGTTGGAGGATGGCCGCACCTTATCCGATTACAAC 3518
Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768
|| ||||| ||||| ||||| |||||||| | ||| | || ||||| ||
Sbjct 3517 ATCCAAAAGGAATCGACTTTACATTTGGTACTTCGTCTTCGTGGTGGAAT 3468
Score = 89.7 bits (98), Expect = 8e-13
Identities = 151/216 (70%), Gaps = 2/216 (1%)
Strand=Plus/Minus
Query 124554 AAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAATGATACAATTTCTAAT 124613
||||| || || || || ||||| ||| | ||| ||||| | || || || ||
Sbjct 3910 AAGACTCTTACCGGAAAGACTATCACTCTTGAGGTTGAATCTTCGGACACTATCGACAAC 3851
Query 124614 -TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTT 124672
|||| || || ||||||||||| || ||||| || |||||||| ||| | | || ||
Sbjct 3850 GTTAAGACT-AAGATTCAAGATAAGGAGGGTATCCCTCCTGATCAGCAACGTTTGATCTT 3792
Query 124673 TGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATC 124732
|| || |||||| | || ||| | || ||| | || || || || ||||| |||||
Sbjct 3791 CGCTGGTAAACAACTCGAAGATGGCCGCACACTTTCCGACTACAACATCCAAAAGGAATC 3732
Query 124733 AACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768
||| | ||||||||| | | | || ||||||||
Sbjct 3731 GACTCTCCATTTGGTTCTCAGACTTCGTGGTGGTAT 3696
>seq9952
Length=86145
Score = 96.9 bits (106), Expect = 5e-15
Identities = 163/233 (70%), Gaps = 10/233 (4%)
Strand=Plus/Plus
Query 205560 TACATGAAATTGTACAAAACAATGACAAGGTGGTATAACCATA---TTTTCAACATCTAT 205616
||||| ||||| |||| |||||||||||||| |||| ||| | || |||
Sbjct 30344 TACATAGAATTGAGCAAACATATGACAAGGTGGTAATGCCATGAGTTTTATATCAGCTAC 30403
Query 205617 AGGATTCCAGGCTGTTAATATTATATTTCTAGATTC--AGGtttattttttattttattt 205674
| ||||| || ||||||| || | | ||| | ||| ||||| || | |||
Sbjct 30404 A---TTCCACGCACTTAATATAATCCTGC--GATCCCAAGGATTATTCTTCAATTTCCAG 30458
Query 205675 atAATATGTGTTAATTGATCAAATCCTTGATTTGTATAATTTGTATCCATATCAATATAT 205734
|| | | || ||||||||| | |||||| |||||||| ||| | ||| | ||||
Sbjct 30459 ATCACTTCTGCTAATTGATCGACTCCTTGTCCTGTATAATCTGTCGCAGCATCTACATAT 30518
Query 205735 TTAGCACCAAAATGACGCCATTGAAAACCATAAACTGGACCTAAATCACCTTC 205787
| || || ||||| ||||||||||| ||||| || ||||||| ||| |||||
Sbjct 30519 GTGGCGCCGAAATGCCGCCATTGAAATCCATATACGGGACCTAGATCCCCTTC 30571
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 755344787433600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |