Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20sydowiana_20[genbank_20GCA_5F000812895.1_202014-12-31] 11,777 sequences; 51,994,176 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq655 118 2e-21 seq9952 96.9 5e-15 >seq655 Length=7676 Score = 118 bits (130), Expect = 2e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || | ||||| || || || || || || || ||||| | || | | Sbjct 3697 ATGCAGATCTTCGTCAAGACCCTTACTGGAAAGACAATCACATTAGAGGTCGAGTCGTCT 3638 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| || |||| | || || ||||||||||| || || || ||||||||||| Sbjct 3637 GATACCATCGATAATGTGAAGACTAAGATTCAAGATAAGGAGGGCATCCCACCTGATCAG 3578 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | || ||||| || || || || || |||||| | || || ||| ||||| || Sbjct 3577 CAACGTCTCATTTTCGCTGGTAAGCAGTTGGAGGATGGCCGCACCTTATCCGATTACAAC 3518 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || ||||| ||||| ||||| |||||||| | ||| | || ||||| || Sbjct 3517 ATCCAAAAGGAATCGACTTTACATTTGGTACTTCGTCTTCGTGGTGGAAT 3468 Score = 89.7 bits (98), Expect = 8e-13 Identities = 151/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 124554 AAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAATGATACAATTTCTAAT 124613 ||||| || || || || ||||| ||| | ||| ||||| | || || || || Sbjct 3910 AAGACTCTTACCGGAAAGACTATCACTCTTGAGGTTGAATCTTCGGACACTATCGACAAC 3851 Query 124614 -TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTT 124672 |||| || || ||||||||||| || ||||| || |||||||| ||| | | || || Sbjct 3850 GTTAAGACT-AAGATTCAAGATAAGGAGGGTATCCCTCCTGATCAGCAACGTTTGATCTT 3792 Query 124673 TGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATC 124732 || || |||||| | || ||| | || ||| | || || || || ||||| ||||| Sbjct 3791 CGCTGGTAAACAACTCGAAGATGGCCGCACACTTTCCGACTACAACATCCAAAAGGAATC 3732 Query 124733 AACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||| | ||||||||| | | | || |||||||| Sbjct 3731 GACTCTCCATTTGGTTCTCAGACTTCGTGGTGGTAT 3696 >seq9952 Length=86145 Score = 96.9 bits (106), Expect = 5e-15 Identities = 163/233 (70%), Gaps = 10/233 (4%) Strand=Plus/Plus Query 205560 TACATGAAATTGTACAAAACAATGACAAGGTGGTATAACCATA---TTTTCAACATCTAT 205616 ||||| ||||| |||| |||||||||||||| |||| ||| | || ||| Sbjct 30344 TACATAGAATTGAGCAAACATATGACAAGGTGGTAATGCCATGAGTTTTATATCAGCTAC 30403 Query 205617 AGGATTCCAGGCTGTTAATATTATATTTCTAGATTC--AGGtttattttttattttattt 205674 | ||||| || ||||||| || | | ||| | ||| ||||| || | ||| Sbjct 30404 A---TTCCACGCACTTAATATAATCCTGC--GATCCCAAGGATTATTCTTCAATTTCCAG 30458 Query 205675 atAATATGTGTTAATTGATCAAATCCTTGATTTGTATAATTTGTATCCATATCAATATAT 205734 || | | || ||||||||| | |||||| |||||||| ||| | ||| | |||| Sbjct 30459 ATCACTTCTGCTAATTGATCGACTCCTTGTCCTGTATAATCTGTCGCAGCATCTACATAT 30518 Query 205735 TTAGCACCAAAATGACGCCATTGAAAACCATAAACTGGACCTAAATCACCTTC 205787 | || || ||||| ||||||||||| ||||| || ||||||| ||| ||||| Sbjct 30519 GTGGCGCCGAAATGCCGCCATTGAAATCCATATACGGGACCTAGATCCCCTTC 30571 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755344787433600