Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rutstroemia_20sydowiana_20[genbank_20GCA_5F000812895.1_202014-12-31]
11,777 sequences; 51,994,176 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq10763 246 3e-60
seq10338 111 1e-19
seq655 93.3 4e-14
>seq10763
Length=10051
Score = 246 bits (272), Expect = 3e-60
Identities = 521/772 (67%), Gaps = 4/772 (1%)
Strand=Plus/Minus
Query 23102 ATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTAC 23161
|| ||||| | ||| | || ||||| ||| ||||| | ||| ||||| |||||| |
Sbjct 5174 ATTGTGCCGAGATTCTTTTGATTGCTCTTTTTGTTGCAAGCATCTTTGTAAAGCATGAAA 5115
Query 23162 GGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACA 23221
|| | || ||||| ||| | ||||| ||| | ||| | | ||||| | | |
Sbjct 5114 GGGTTTCCTGTCTCAGTCTGTGCCTCGAGGATAGAATACCAAAGCTTTTGAGCCTTGATA 5055
Query 23222 CGTCGCACGTACCTG-CCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACC 23280
||| ||| | | |||| || |||||| | || | || ||||| || ||||
Sbjct 5054 -GTCTTACGGCCTTTACCTTGTTTCTCGTAACCCTCATAAAGAGCTTCAAACTCATCACC 4996
Query 23281 GTA-ACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGACTCCACATTGAGTCAT 23339
|| ||| || |||| ||| || ||| | || |||||||| |||| | || |
Sbjct 4995 ATAGACA-TCAGCCAAGCCAGGACATTCGTTGGGGCACATGAGTGTCCAATCTCCGTTCT 4937
Query 23340 TTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGC 23399
||||||| || |||| || ||||| || ||||| || || || || || ||||| || |
Sbjct 4936 TTTCAACACGCTTCATGAAGAGATCTGGAATCCAGAGGGCATAAAAGAGGTCGCGTGCTC 4877
Query 23400 GCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCC 23459
| || ||||| || || |||||| | ||||||||| || || || ||||||||||
Sbjct 4876 GAACTTCCTCCTTTCCATGATTCTTTCGGAGATCCAAAAACTCAAAGACATCCGCATGCC 4817
Query 23460 ACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAAC 23519
| || || ||||| | ||| || || || || | ||| || || || |||||||| || |
Sbjct 4816 ATGGTTCAAGGTAGATGGCGAATGCACCAGGGCGCTTGTTACCACCTTGATCGACATATC 4757
Query 23520 GGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGC 23579
|| || |||||| | |||| ||||| || |||| |||||| || || | ||
Sbjct 4756 TAGCGGTATTGTTGAAAACTCGAAGCATAGGAACGATACCGTTAGAATTTCCATTTGTGC 4697
Query 23580 CCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCG 23639
| || | | ||| | || |||| |||| | || || ||| || ||||| |
Sbjct 4696 CAGCAATGTATGCACCAGTAGCACGAATTCTGTGGATGTTGAGACCAATACCTCCAGCAT 4637
Query 23640 ATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTT 23699
|| || ||||| || || |||| ||| || || || || || || || ||||| |
Sbjct 4636 TCTTAGAAATCATGGCACAAATCTTCAAAGTATCATAAATTCCATCAATACTATCCTCCT 4577
Query 23700 TGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTG 23759
| | | | | ||| || ||||| | ||| |||| || ||| | || ||||| ||||
Sbjct 4576 TCATGTCAATGAGGAAGCATGAAGAAAGTTGGGCTTGTGGTGTACCCGCGGAGAAGAGTG 4517
Query 23760 TCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCAT 23819
| || ||||| ||||||||| || ||||||| ||||| || || |||||| |
Sbjct 4516 TTGGAGAAGCGTGTGTAAAGTATTTGTTGGACATTAAGTTGTAGGTTTCAATGGCGCTCT 4457
Query 23820 CAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGG 23871
| || || || ||||| ||||| | ||| || ||||| ||||| | ||| ||
Sbjct 4456 CGATATCATCACCGTGAATACCAACGGCAACACGCATAATCATTTGTTGTGG 4405
>seq10338
Length=29807
Score = 111 bits (122), Expect = 1e-19
Identities = 203/295 (69%), Gaps = 7/295 (2%)
Strand=Plus/Plus
Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629
|||||| | |||||||| ||||| || ||||| || ||||||| ||||| | ||| ||
Sbjct 12536 ATTTGGCAGATGTACAAGAAGGCTGAGGCATCTTTCTGGACCGCAGAAGAGATCGACTTG 12595
Query 57630 TCTAAGGATCTGAGCGATTGGGATTCC---CTCAAAGAATCTGAGAGAAATTTTATTAAA 57686
|| |||||||| ||| ||| | | ||||| || |||| | | || |
Sbjct 12596 TCAAAGGATCTTCACGACTGGAACAACAGACTCAATGACGATGAGCGTTACTTCGTCTCT 12655
Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746
||||| | || || ||||||||||| ||||| ||||| || ||||| | |||||| |
Sbjct 12656 CACGTCCTCGCATTCTTCGCCGCATCTGATGGAATTGTCAATGAGAACCTTGTCGAACG- 12714
Query 57747 TTTTCA--CAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCA 57804
||||| || || || | | || || ||||||| ||||| || || | |
Sbjct 12715 -TTTCAGTGGTGAGGTCCAGATCCCTGAAGCACGATGCTTCTACGGTTTCCAGATCATGA 12773
Query 57805 TTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGA 57859
| || ||| | || || |||| || || || ||||||||||| ||| | |||||
Sbjct 12774 TGGAGAACATTCACTCGGAAACATACTCTCTTCTCATCGATACATACATCAAGGA 12828
>seq655
Length=7676
Score = 93.3 bits (102), Expect = 4e-14
Identities = 154/220 (70%), Gaps = 2/220 (1%)
Strand=Plus/Minus
Query 31203 TCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCG 31262
|||| |||||||| || || || || ||||| | || |||||| | || |||| | |||
Sbjct 3915 TCGTCAAGACTCTTACCGGAAAGACTATCACTCTTGAGGTTGAATCTTCGGACACTATCG 3856
Query 31263 A-AACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTA 31321
| |||| | | || ||| | | | ||||| || | || || || ||||| ||| |
Sbjct 3855 ACAACGTTAAGACTAAGATTCAAG-ATAAGGAGGGTATCCCTCCTGATCAGCAACGTTTG 3797
Query 31322 ATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAAA 31381
|| |||||||| ||||| | ||||| || | ||| || ||||| |||||
Sbjct 3796 ATCTTCGCTGGTAAACAACTCGAAGATGGCCGCACACTTTCCGACTACAACATCCAAAAG 3737
Query 31382 GAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421
||||||||||| ||| |||| || ||||| | || ||||
Sbjct 3736 GAATCGACTCTCCATTTGGTTCTCAGACTTCGTGGTGGTA 3697
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445700777613840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |