Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20sydowiana_20[genbank_20GCA_5F000812895.1_202014-12-31] 11,777 sequences; 51,994,176 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq10763 246 3e-60 seq10338 111 1e-19 seq655 93.3 4e-14 >seq10763 Length=10051 Score = 246 bits (272), Expect = 3e-60 Identities = 521/772 (67%), Gaps = 4/772 (1%) Strand=Plus/Minus Query 23102 ATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTAC 23161 || ||||| | ||| | || ||||| ||| ||||| | ||| ||||| |||||| | Sbjct 5174 ATTGTGCCGAGATTCTTTTGATTGCTCTTTTTGTTGCAAGCATCTTTGTAAAGCATGAAA 5115 Query 23162 GGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACA 23221 || | || ||||| ||| | ||||| ||| | ||| | | ||||| | | | Sbjct 5114 GGGTTTCCTGTCTCAGTCTGTGCCTCGAGGATAGAATACCAAAGCTTTTGAGCCTTGATA 5055 Query 23222 CGTCGCACGTACCTG-CCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACC 23280 ||| ||| | | |||| || |||||| | || | || ||||| || |||| Sbjct 5054 -GTCTTACGGCCTTTACCTTGTTTCTCGTAACCCTCATAAAGAGCTTCAAACTCATCACC 4996 Query 23281 GTA-ACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGACTCCACATTGAGTCAT 23339 || ||| || |||| ||| || ||| | || |||||||| |||| | || | Sbjct 4995 ATAGACA-TCAGCCAAGCCAGGACATTCGTTGGGGCACATGAGTGTCCAATCTCCGTTCT 4937 Query 23340 TTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGC 23399 ||||||| || |||| || ||||| || ||||| || || || || || ||||| || | Sbjct 4936 TTTCAACACGCTTCATGAAGAGATCTGGAATCCAGAGGGCATAAAAGAGGTCGCGTGCTC 4877 Query 23400 GCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCC 23459 | || ||||| || || |||||| | ||||||||| || || || |||||||||| Sbjct 4876 GAACTTCCTCCTTTCCATGATTCTTTCGGAGATCCAAAAACTCAAAGACATCCGCATGCC 4817 Query 23460 ACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAAC 23519 | || || ||||| | ||| || || || || | ||| || || || |||||||| || | Sbjct 4816 ATGGTTCAAGGTAGATGGCGAATGCACCAGGGCGCTTGTTACCACCTTGATCGACATATC 4757 Query 23520 GGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGC 23579 || || |||||| | |||| ||||| || |||| |||||| || || | || Sbjct 4756 TAGCGGTATTGTTGAAAACTCGAAGCATAGGAACGATACCGTTAGAATTTCCATTTGTGC 4697 Query 23580 CCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCG 23639 | || | | ||| | || |||| |||| | || || ||| || ||||| | Sbjct 4696 CAGCAATGTATGCACCAGTAGCACGAATTCTGTGGATGTTGAGACCAATACCTCCAGCAT 4637 Query 23640 ATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTT 23699 || || ||||| || || |||| ||| || || || || || || || ||||| | Sbjct 4636 TCTTAGAAATCATGGCACAAATCTTCAAAGTATCATAAATTCCATCAATACTATCCTCCT 4577 Query 23700 TGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTG 23759 | | | | | ||| || ||||| | ||| |||| || ||| | || ||||| |||| Sbjct 4576 TCATGTCAATGAGGAAGCATGAAGAAAGTTGGGCTTGTGGTGTACCCGCGGAGAAGAGTG 4517 Query 23760 TCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCAT 23819 | || ||||| ||||||||| || ||||||| ||||| || || |||||| | Sbjct 4516 TTGGAGAAGCGTGTGTAAAGTATTTGTTGGACATTAAGTTGTAGGTTTCAATGGCGCTCT 4457 Query 23820 CAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGG 23871 | || || || ||||| ||||| | ||| || ||||| ||||| | ||| || Sbjct 4456 CGATATCATCACCGTGAATACCAACGGCAACACGCATAATCATTTGTTGTGG 4405 >seq10338 Length=29807 Score = 111 bits (122), Expect = 1e-19 Identities = 203/295 (69%), Gaps = 7/295 (2%) Strand=Plus/Plus Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629 |||||| | |||||||| ||||| || ||||| || ||||||| ||||| | ||| || Sbjct 12536 ATTTGGCAGATGTACAAGAAGGCTGAGGCATCTTTCTGGACCGCAGAAGAGATCGACTTG 12595 Query 57630 TCTAAGGATCTGAGCGATTGGGATTCC---CTCAAAGAATCTGAGAGAAATTTTATTAAA 57686 || |||||||| ||| ||| | | ||||| || |||| | | || | Sbjct 12596 TCAAAGGATCTTCACGACTGGAACAACAGACTCAATGACGATGAGCGTTACTTCGTCTCT 12655 Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746 ||||| | || || ||||||||||| ||||| ||||| || ||||| | |||||| | Sbjct 12656 CACGTCCTCGCATTCTTCGCCGCATCTGATGGAATTGTCAATGAGAACCTTGTCGAACG- 12714 Query 57747 TTTTCA--CAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCA 57804 ||||| || || || | | || || ||||||| ||||| || || | | Sbjct 12715 -TTTCAGTGGTGAGGTCCAGATCCCTGAAGCACGATGCTTCTACGGTTTCCAGATCATGA 12773 Query 57805 TTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGA 57859 | || ||| | || || |||| || || || ||||||||||| ||| | ||||| Sbjct 12774 TGGAGAACATTCACTCGGAAACATACTCTCTTCTCATCGATACATACATCAAGGA 12828 >seq655 Length=7676 Score = 93.3 bits (102), Expect = 4e-14 Identities = 154/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 31203 TCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCG 31262 |||| |||||||| || || || || ||||| | || |||||| | || |||| | ||| Sbjct 3915 TCGTCAAGACTCTTACCGGAAAGACTATCACTCTTGAGGTTGAATCTTCGGACACTATCG 3856 Query 31263 A-AACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTA 31321 | |||| | | || ||| | | | ||||| || | || || || ||||| ||| | Sbjct 3855 ACAACGTTAAGACTAAGATTCAAG-ATAAGGAGGGTATCCCTCCTGATCAGCAACGTTTG 3797 Query 31322 ATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAAA 31381 || |||||||| ||||| | ||||| || | ||| || ||||| ||||| Sbjct 3796 ATCTTCGCTGGTAAACAACTCGAAGATGGCCGCACACTTTCCGACTACAACATCCAAAAG 3737 Query 31382 GAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||||||||| ||| |||| || ||||| | || |||| Sbjct 3736 GAATCGACTCTCCATTTGGTTCTCAGACTTCGTGGTGGTA 3697 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445700777613840