Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rutstroemia_20sydowiana_20[genbank_20GCA_5F000812895.1_202014-12-31]
11,777 sequences; 51,994,176 total letters
Query= NC_003389.1
Length=146454
Score E
Sequences producing significant alignments: (Bits) Value
seq10763 107 2e-18
>seq10763
Length=10051
Score = 107 bits (118), Expect = 2e-18
Identities = 495/780 (63%), Gaps = 8/780 (1%)
Strand=Plus/Minus
Query 37774 ATTGTTCCCAAATTGCTTTGATTGGATTTTTTATTACAAGAATCTTTATATAGTATATAC 37833
||||| || | ||| |||||||| ||||| || |||| |||||| || || || |
Sbjct 5174 ATTGTGCCGAGATTCTTTTGATTGCTCTTTTTGTTGCAAGCATCTTTGTAAAGCATGAAA 5115
Query 37834 GGCGTTCCTTGTTCTATTTGAGCCTCGATAATAGATTTCCATAAACTTCTT-GCTTTAAC 37892
|| ||||| || | || ||||||| ||||| | ||| || ||| | || ||
Sbjct 5114 GGGTTTCCTGTCTCAGTCTGTGCCTCGAGGATAGAATACCA-AAGCTTTTGAGCCTT--- 5059
Query 37893 GATCGCTTTAAttttttt-CTTTGTTTC--GTATTCTATATATAATTTGTTAAAATCATT 37949
||| | ||| ||| | ||||||| ||| | ||| | | ||| ||||
Sbjct 5058 GATAGTCTTACGGCCTTTACCTTGTTTCTCGTAACCCTCATAAAGAGCTTCAAACTCATC 4999
Query 37950 CCCCCATACATCGCATAATCCTGGACATTCGCATGGACACATTAGAGACCATTCTTCATC 38009
|| | ||||| || || ||||||||| || ||||| || | ||| ||| | |
Sbjct 4998 ACCATAGACATCAGCCAAGCCAGGACATTCGTTGGGGCACATGAGTGTCCAATCTCCGTT 4939
Query 38010 TTTTTCTACGCGTTCCATAAATAAATCAGGTACCCATAATGCAGTAAATAAATCTTTGGT 38069
||||| || || | ||| || | ||| || | ||| | ||| ||| | || |
Sbjct 4938 CTTTTCAACACGCTTCATGAAGAGATCTGGAATCCAGAGGGCATAAAAGAGGTCGCGTGC 4879
Query 38070 TCTATATTCTTCGTTCCCTACATTCTTTCTTAAGCTTAGAAAATCGAATATATCAGCGTG 38129
|| | ||| || || || |||||||| | | ||| || || | ||| || ||
Sbjct 4878 TCGAACTTCCTCCTTTCCATGATTCTTTCGGAGATCCAAAAACTCAAAGACATCCGCATG 4819
Query 38130 CCATGGTTCTATATAAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATA 38189
||||||||| | || || | | ||| || || | || | ||| || |||| | |||
Sbjct 4818 CCATGGTTCAAGGTAGATGGCGAATGCACCAGGGCGCTTGTTACCACCTTGATCGACATA 4759
Query 38190 TCTAACTGTGTTATTATATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTAT 38249
|||| | || || || | | || | |||||| || ||||| ||||| || || ||| |
Sbjct 4758 TCTAGCGGTATTGTTGAAAACTCGAAGCATAGGAACGATACCGTTAGAATTTCCATTTGT 4699
Query 38250 ACCGGATATATAAGTACCCTTAGCTCGTATATTACTTATCGACAATCCTATTCCACCTGC 38309
|| | || || | ||| |||| || || | || | || || || || ||
Sbjct 4698 GCCAGCAATGTATGCACCAGTAGCACGAATTCTGTGGATGTTGAGACCAATACCTCCAGC 4639
Query 38310 ATGTTTTGATATTAAAGCGCATTGTTTTAACGTATCAAATATACCTTCTATACTGTCATC 38369
|| || || || | || || || || |||||| | || || || ||||| || ||
Sbjct 4638 ATTCTTAGAAATCATGGCACAAATCTTCAAAGTATCATAAATTCCATCAATACTATCCTC 4579
Query 38370 CTTTATTGGTAGTATAAAACAACTAGACATTTGAGGCAATGGAGTTCCGGCGTTAAATAA 38429
||| || | | || || ||| | ||| | ||| || || ||| || |
Sbjct 4578 CTTCATGTCAATGAGGAAGCATGAAGAAAGTTGGGCTTGTGGTGTACCCGCGGAGAAGAG 4519
Query 38430 TGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATTATATGTTTCTATTACATC 38489
||| ||||| || ||| | || |||| | |||| | || || ||||| || |
Sbjct 4518 TGTTGGAGAAGCGTGTGTAAAGTATTTGTTGGACATTAAGTTGTAGGTTTCAATGGCGCT 4459
Query 38490 ATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTC 38549
|| |||||| | ||||||||||| | | || | ||| | ||| |||||||| | |||
Sbjct 4458 CTCGATATCATCACCGTGAATACCAACGGCAACACGCATAATCATTTGTTGTGGACGTTC 4399
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 468455827292880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |