Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20sydowiana_20[genbank_20GCA_5F000812895.1_202014-12-31] 11,777 sequences; 51,994,176 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq10763 107 2e-18 >seq10763 Length=10051 Score = 107 bits (118), Expect = 2e-18 Identities = 495/780 (63%), Gaps = 8/780 (1%) Strand=Plus/Minus Query 37774 ATTGTTCCCAAATTGCTTTGATTGGATTTTTTATTACAAGAATCTTTATATAGTATATAC 37833 ||||| || | ||| |||||||| ||||| || |||| |||||| || || || | Sbjct 5174 ATTGTGCCGAGATTCTTTTGATTGCTCTTTTTGTTGCAAGCATCTTTGTAAAGCATGAAA 5115 Query 37834 GGCGTTCCTTGTTCTATTTGAGCCTCGATAATAGATTTCCATAAACTTCTT-GCTTTAAC 37892 || ||||| || | || ||||||| ||||| | ||| || ||| | || || Sbjct 5114 GGGTTTCCTGTCTCAGTCTGTGCCTCGAGGATAGAATACCA-AAGCTTTTGAGCCTT--- 5059 Query 37893 GATCGCTTTAAttttttt-CTTTGTTTC--GTATTCTATATATAATTTGTTAAAATCATT 37949 ||| | ||| ||| | ||||||| ||| | ||| | | ||| |||| Sbjct 5058 GATAGTCTTACGGCCTTTACCTTGTTTCTCGTAACCCTCATAAAGAGCTTCAAACTCATC 4999 Query 37950 CCCCCATACATCGCATAATCCTGGACATTCGCATGGACACATTAGAGACCATTCTTCATC 38009 || | ||||| || || ||||||||| || ||||| || | ||| ||| | | Sbjct 4998 ACCATAGACATCAGCCAAGCCAGGACATTCGTTGGGGCACATGAGTGTCCAATCTCCGTT 4939 Query 38010 TTTTTCTACGCGTTCCATAAATAAATCAGGTACCCATAATGCAGTAAATAAATCTTTGGT 38069 ||||| || || | ||| || | ||| || | ||| | ||| ||| | || | Sbjct 4938 CTTTTCAACACGCTTCATGAAGAGATCTGGAATCCAGAGGGCATAAAAGAGGTCGCGTGC 4879 Query 38070 TCTATATTCTTCGTTCCCTACATTCTTTCTTAAGCTTAGAAAATCGAATATATCAGCGTG 38129 || | ||| || || || |||||||| | | ||| || || | ||| || || Sbjct 4878 TCGAACTTCCTCCTTTCCATGATTCTTTCGGAGATCCAAAAACTCAAAGACATCCGCATG 4819 Query 38130 CCATGGTTCTATATAAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATA 38189 ||||||||| | || || | | ||| || || | || | ||| || |||| | ||| Sbjct 4818 CCATGGTTCAAGGTAGATGGCGAATGCACCAGGGCGCTTGTTACCACCTTGATCGACATA 4759 Query 38190 TCTAACTGTGTTATTATATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTAT 38249 |||| | || || || | | || | |||||| || ||||| ||||| || || ||| | Sbjct 4758 TCTAGCGGTATTGTTGAAAACTCGAAGCATAGGAACGATACCGTTAGAATTTCCATTTGT 4699 Query 38250 ACCGGATATATAAGTACCCTTAGCTCGTATATTACTTATCGACAATCCTATTCCACCTGC 38309 || | || || | ||| |||| || || | || | || || || || || Sbjct 4698 GCCAGCAATGTATGCACCAGTAGCACGAATTCTGTGGATGTTGAGACCAATACCTCCAGC 4639 Query 38310 ATGTTTTGATATTAAAGCGCATTGTTTTAACGTATCAAATATACCTTCTATACTGTCATC 38369 || || || || | || || || || |||||| | || || || ||||| || || Sbjct 4638 ATTCTTAGAAATCATGGCACAAATCTTCAAAGTATCATAAATTCCATCAATACTATCCTC 4579 Query 38370 CTTTATTGGTAGTATAAAACAACTAGACATTTGAGGCAATGGAGTTCCGGCGTTAAATAA 38429 ||| || | | || || ||| | ||| | ||| || || ||| || | Sbjct 4578 CTTCATGTCAATGAGGAAGCATGAAGAAAGTTGGGCTTGTGGTGTACCCGCGGAGAAGAG 4519 Query 38430 TGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATTATATGTTTCTATTACATC 38489 ||| ||||| || ||| | || |||| | |||| | || || ||||| || | Sbjct 4518 TGTTGGAGAAGCGTGTGTAAAGTATTTGTTGGACATTAAGTTGTAGGTTTCAATGGCGCT 4459 Query 38490 ATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTC 38549 || |||||| | ||||||||||| | | || | ||| | ||| |||||||| | ||| Sbjct 4458 CTCGATATCATCACCGTGAATACCAACGGCAACACGCATAATCATTTGTTGTGGACGTTC 4399 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468455827292880