Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20sydowiana_20[genbank_20GCA_5F000812895.1_202014-12-31] 11,777 sequences; 51,994,176 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq10763 396 3e-105 >seq10763 Length=10051 Score = 396 bits (438), Expect = 3e-105 Identities = 1331/2060 (65%), Gaps = 39/2060 (2%) Strand=Plus/Minus Query 64839 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 64898 ||||||||||| || || || || | | ||||| |||||||||||||| || || ||| Sbjct 6161 GTGAATTGAATTGGTGCCGAAGCAGCCATAGTACGGAGATAGTACATTCCAGTCTTGAGA 6102 Query 64899 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 64958 || | ||||||| |||||||| || | ||| | || || || Sbjct 6101 CCCAATTTCCATCCAGCGAAATGCATGGAAGTGATCTTGCCCATTGTAGGGTCCTTCATG 6042 Query 64959 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 65018 || || ||||| |||||| |||||| ||||| || || | |||||| ||||||| | Sbjct 6041 TGAATGTTCATCGATTGAGATTGATCAATGAAAGCACCACGGTCTGCGGCCATTTGAACA 5982 Query 65019 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 65078 || | ||| | |||||||||| || || || | ||||| || |||||| | Sbjct 5981 ATGTTTCGTTGAGAGATTTCCCAAACGGTCTTGTAGAGAGCTTTAATCTCGGCTGGAATG 5922 Query 65079 TTTG---TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTC 65135 || | |||| |||||||| |||||||| || || || | |||||| || | |||| | Sbjct 5921 TTGGGAATATTTTGAATGGAACCACCATCAGCGATGATACGATTCTTCATGTTATCAGAC 5862 Query 65136 CATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCA 65195 || | | | ||| ||| | |||| || || ||||| ||||| || || || Sbjct 5861 CAAAGTCCCATGTCGACCAAATCCTTAAGAAGCCATGGGTTAACGACTTGGAACTCACCG 5802 Query 65196 GACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCC 65255 | ||| || | || | |||||| || || || || || | | | ||||| || Sbjct 5801 GCCAACACACGGCGTGAGTAAATGTTGGAAGTGTATGGCTCGAAACATTCATTGAAACCG 5742 Query 65256 AAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCG 65315 | |||||||| || ||||| |||||||| || || | |||||||| | | ||| Sbjct 5741 AGAATTTGAGATGTGCTGGCAGTTGGCATAGGAGCAACAAGCAAACTATTCCGGATACC- 5683 Query 65316 TATGTTC--TGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNN 65373 ||||| |||| | || |||| ||||||| ||||||||||| || ||| Sbjct 5682 -ATGTTGCTTGATAGATTGCTTGAGAGAATCCCAATCCCAAAGATCCGTAGGAGTAACAC 5624 Query 65374 NNNNNNNNNNNNNTTGTAGAATACCGTT----ACTGGCGTACGATCCTACATATGTATCG 65429 ||| || ||| || ||||| | ||||| |||||| ||| Sbjct 5623 CCCACATATCATATTGAAGCTCACCCTTGGAGACTGGAG----ATCCTTCATATGACTCG 5568 Query 65430 TATGGTCCTTCCTTCTCAGCTAGTTCA-CAACTCGCCTCTAATGCACCGTAATAAATGGT 65488 ||||| ||| | || |||| | | || | || || ||||||| || ||||| Sbjct 5567 TATGGGCCTAATTCCTTGGCTATCTGAACAGATGAAGTCAAA-GCACCGTGGTAGATGGT 5509 Query 65489 TTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAG 65548 || ||||| | | || |||| | ||||| | ||| ||||| ||| |||| Sbjct 5508 CTCAAAGATTTGGATGTTGAGATGCTTCGCTTCGGGTGAATCGAATGG-TAAACGGAGAG 5450 Query 65549 AATA-AACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAG 65607 | || || || || | ||||||||||||| | | ||||||| ||| | ||| Sbjct 5449 CCAAGAAGGCATCAGCAAGACCTTGAACACCAACAGCAATAGGTCGATGACGGAAATTGC 5390 Query 65608 AGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGA 65667 || |||||| | ||||| ||||| ||||| ||||| || || | ||||||| Sbjct 5389 TTCTTCTGGCTTCTTCGACGGGATAGTAATTGATATCGATAATCTTGTTCAAGTTTCTGA 5330 Query 65668 CAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA---TCGCTCATCTATT---A 65721 ||| |||| || || || | || || | |||||| | || ||| | || | Sbjct 5329 CAACAACTTGAACGACCTCGTGAAGCTTTTGGAAATCATAAGTTCCCTCGGCCATGTTGA 5270 Query 65722 CAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCAT 65781 |||| | | |||| ||| |||| |||||| || ||||||| || | | | Sbjct 5269 CAAAGGTTGGGAGAGCAATAGAAGCCAAATTACAGCAAGCAACCTCATCAGGTGCAGAGT 5210 Query 65782 ATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTAC 65841 ||| | || || ||||| | || | ||| || || | ||| | |||||| | Sbjct 5209 ATTCGACGATTTCCGTGCACAAGTTGGAGCTGCGGATTGTGCCGAGATTCTTTTGATTGC 5150 Query 65842 TCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATT 65901 |||||||||| || ||||| || ||||| ||||| || | || || ||| |||| | | Sbjct 5149 TCTTTTTGTTGCAAGCATCTTTGTAAAGCATGAAAGGGTTTCCTGTCTCAGTCTGTGCCT 5090 Query 65902 CTATAATCGCTTTCCAGACGACTCGAGCCTTTAT-----TATAGATTTGTATCTCTTTTC 65956 | | || | | ||| | | ||||||| || || | || || || |||| Sbjct 5089 CGAGGATAGAATACCAAAGCTTTTGAGCCTTGATAGTCTTACGGCCTT-TACCTTGTTTC 5031 Query 65957 TCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGG 66016 || ||| ||| | ||| ||||| || || | |||| |||| ||||| Sbjct 5030 TC----GTAACCCTCATAAAGAGCTTCAAACTCATCACCATAGACATCAGCCAAGCCAGG 4975 Query 66017 ACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAG 66076 |||||| | || ||||| | | ||| ||||||| | | || || ||||| ||||| Sbjct 4974 ACATTCGTTGGGGCACATGAGTGTCCAATCTCCGTTCTTTTCAACACGCTTCATGAAGAG 4915 Query 66077 ATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATT 66136 ||| |||||||| || || ||| | || | | || | |||||| ||||| ||| Sbjct 4914 ATCTGGAATCCAGAGGGCATAAAAGAGGTCGCGTGCTCGAACTTCCTCCTTTCCATGATT 4855 Query 66137 CTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATGGCCAT 66196 |||| ||||| | ||| | | | ||| |||||| ||||| | ||| ||||| | Sbjct 4854 CTTTCGGAGATCCAAAAACTCAAAGACATCCGCATGCCATGGTTCAAGGTAGATGGCGAA 4795 Query 66197 AACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCT 66256 | ||||| || ||||| || || ||||| | ||||||||||| || || |||||| Sbjct 4794 TGCACCAGGGCGCTTGTTACCACCTTGATCGACATATCTAGCGGTATTGTTGAAAACTCG 4735 Query 66257 CAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGC 66316 | ||| |||| ||||| || || | ||||| || || | || || ||| | || Sbjct 4734 AAGCATAGGAACGATACCGTTAGAATTTCCATTTGTGCCAGCAATGTATGCACCAGTAGC 4675 Query 66317 ACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCG 66376 |||||| | || ||||| || || || || | ||||| || | || || Sbjct 4674 ACGAATTCTGTGGATGTTGAGACCAATACCTCCAGCATTCTTAGAAATCATGGCACAAAT 4615 Query 66377 TTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCT 66436 || || |||||||| || || || |||||||| ||| |||||| || || || || Sbjct 4614 CTTCAAAGTATCATAAATTCCATCAATACTATCCTCCTTCATGTCAATGAGGAAGCATGA 4555 Query 66437 AGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCA 66496 ||| | |||| | || ||||| || | || ||||||||||| ||||| | Sbjct 4554 AGAAAGTTGGGCTTGTGGTGTACCCGCGGAGAAGAGTGTTGGAGAAGCGTGTGTAAAGTA 4495 Query 66497 TTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATC-CCATTGATGAATTC 66555 ||| | || | || ||||| || ||||| || || ||||| || | ||||| | Sbjct 4494 TTTGTTGGACATTAAGTTGTAGGTTTCAATGGCGCTCTCGATATCATCACCG-TGAATAC 4436 Query 66556 CTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCA 66615 | || || |||||||| | ||| || || || | |||| | | || | | | Sbjct 4435 CAACGGCAACACGCATAATCATTTGTTGTGGACGTTCAGCAACTTTTCCATCGAGGCGGA 4376 Query 66616 ACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGT 66675 | ||| ||| | || | ||| || || || || || | ||| |||||||| |||| Sbjct 4375 GGAGGTATGATCTCTCAAGAGTCTTGAATCCGAAGTATTGGTAGTTGAAGTCTCGATCGT 4316 Query 66676 AAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCATGGTAATACTTG 66735 ||| ||| | ||||| |||| ||| || | | |||| |||| ||| | |||| Sbjct 4315 AAACGATAGCAGAGTTAAGTTCTGCCTCATGTCTCATAAC-ACATTCATATGTTTCCTTG 4257 Query 66736 -AAATAATCGGAGAATGTTTCCCATTTTTAGGATTGACATAGTTGAATAAATCCTCCATC 66794 ||| || ||||| | | | |||||||| | || |||| | ||| || || Sbjct 4256 CTAATCATGGGAGATTTTGTACCATTTTTGGTGTTCGTGTAGTGGTATAGGTCACTGATG 4197 Query 66795 ACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCT 66854 || | ||| |||| || |||| ||||| ||||| || || || || | ||| ||| Sbjct 4196 ACATGCGAGAATTGTTTCTTGGTTTGCTTGTGGAGATTGGAAACTGCAATACGAGCAGCT 4137 Query 66855 ATAATGGCATAATCCGGATG 66874 | ||||||||||| ||||| Sbjct 4136 AAGATGGCATAATCGGGATG 4117 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658075908736680