Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rutstroemia_20sydowiana_20[genbank_20GCA_5F000812895.1_202014-12-31]
11,777 sequences; 51,994,176 total letters
Query= NC_003391.1
Length=205719
Score E
Sequences producing significant alignments: (Bits) Value
seq10763 396 3e-105
>seq10763
Length=10051
Score = 396 bits (438), Expect = 3e-105
Identities = 1331/2060 (65%), Gaps = 39/2060 (2%)
Strand=Plus/Minus
Query 64839 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 64898
||||||||||| || || || || | | ||||| |||||||||||||| || || |||
Sbjct 6161 GTGAATTGAATTGGTGCCGAAGCAGCCATAGTACGGAGATAGTACATTCCAGTCTTGAGA 6102
Query 64899 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 64958
|| | ||||||| |||||||| || | ||| | || || ||
Sbjct 6101 CCCAATTTCCATCCAGCGAAATGCATGGAAGTGATCTTGCCCATTGTAGGGTCCTTCATG 6042
Query 64959 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 65018
|| || ||||| |||||| |||||| ||||| || || | |||||| ||||||| |
Sbjct 6041 TGAATGTTCATCGATTGAGATTGATCAATGAAAGCACCACGGTCTGCGGCCATTTGAACA 5982
Query 65019 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 65078
|| | ||| | |||||||||| || || || | ||||| || |||||| |
Sbjct 5981 ATGTTTCGTTGAGAGATTTCCCAAACGGTCTTGTAGAGAGCTTTAATCTCGGCTGGAATG 5922
Query 65079 TTTG---TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTC 65135
|| | |||| |||||||| |||||||| || || || | |||||| || | |||| |
Sbjct 5921 TTGGGAATATTTTGAATGGAACCACCATCAGCGATGATACGATTCTTCATGTTATCAGAC 5862
Query 65136 CATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCA 65195
|| | | | ||| ||| | |||| || || ||||| ||||| || || ||
Sbjct 5861 CAAAGTCCCATGTCGACCAAATCCTTAAGAAGCCATGGGTTAACGACTTGGAACTCACCG 5802
Query 65196 GACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCC 65255
| ||| || | || | |||||| || || || || || | | | ||||| ||
Sbjct 5801 GCCAACACACGGCGTGAGTAAATGTTGGAAGTGTATGGCTCGAAACATTCATTGAAACCG 5742
Query 65256 AAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCG 65315
| |||||||| || ||||| |||||||| || || | |||||||| | | |||
Sbjct 5741 AGAATTTGAGATGTGCTGGCAGTTGGCATAGGAGCAACAAGCAAACTATTCCGGATACC- 5683
Query 65316 TATGTTC--TGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNN 65373
||||| |||| | || |||| ||||||| ||||||||||| || |||
Sbjct 5682 -ATGTTGCTTGATAGATTGCTTGAGAGAATCCCAATCCCAAAGATCCGTAGGAGTAACAC 5624
Query 65374 NNNNNNNNNNNNNTTGTAGAATACCGTT----ACTGGCGTACGATCCTACATATGTATCG 65429
||| || ||| || ||||| | ||||| |||||| |||
Sbjct 5623 CCCACATATCATATTGAAGCTCACCCTTGGAGACTGGAG----ATCCTTCATATGACTCG 5568
Query 65430 TATGGTCCTTCCTTCTCAGCTAGTTCA-CAACTCGCCTCTAATGCACCGTAATAAATGGT 65488
||||| ||| | || |||| | | || | || || ||||||| || |||||
Sbjct 5567 TATGGGCCTAATTCCTTGGCTATCTGAACAGATGAAGTCAAA-GCACCGTGGTAGATGGT 5509
Query 65489 TTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAG 65548
|| ||||| | | || |||| | ||||| | ||| ||||| ||| ||||
Sbjct 5508 CTCAAAGATTTGGATGTTGAGATGCTTCGCTTCGGGTGAATCGAATGG-TAAACGGAGAG 5450
Query 65549 AATA-AACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAG 65607
| || || || || | ||||||||||||| | | ||||||| ||| | |||
Sbjct 5449 CCAAGAAGGCATCAGCAAGACCTTGAACACCAACAGCAATAGGTCGATGACGGAAATTGC 5390
Query 65608 AGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGA 65667
|| |||||| | ||||| ||||| ||||| ||||| || || | |||||||
Sbjct 5389 TTCTTCTGGCTTCTTCGACGGGATAGTAATTGATATCGATAATCTTGTTCAAGTTTCTGA 5330
Query 65668 CAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA---TCGCTCATCTATT---A 65721
||| |||| || || || | || || | |||||| | || ||| | || |
Sbjct 5329 CAACAACTTGAACGACCTCGTGAAGCTTTTGGAAATCATAAGTTCCCTCGGCCATGTTGA 5270
Query 65722 CAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCAT 65781
|||| | | |||| ||| |||| |||||| || ||||||| || | | |
Sbjct 5269 CAAAGGTTGGGAGAGCAATAGAAGCCAAATTACAGCAAGCAACCTCATCAGGTGCAGAGT 5210
Query 65782 ATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTAC 65841
||| | || || ||||| | || | ||| || || | ||| | |||||| |
Sbjct 5209 ATTCGACGATTTCCGTGCACAAGTTGGAGCTGCGGATTGTGCCGAGATTCTTTTGATTGC 5150
Query 65842 TCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATT 65901
|||||||||| || ||||| || ||||| ||||| || | || || ||| |||| | |
Sbjct 5149 TCTTTTTGTTGCAAGCATCTTTGTAAAGCATGAAAGGGTTTCCTGTCTCAGTCTGTGCCT 5090
Query 65902 CTATAATCGCTTTCCAGACGACTCGAGCCTTTAT-----TATAGATTTGTATCTCTTTTC 65956
| | || | | ||| | | ||||||| || || | || || || ||||
Sbjct 5089 CGAGGATAGAATACCAAAGCTTTTGAGCCTTGATAGTCTTACGGCCTT-TACCTTGTTTC 5031
Query 65957 TCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGG 66016
|| ||| ||| | ||| ||||| || || | |||| |||| |||||
Sbjct 5030 TC----GTAACCCTCATAAAGAGCTTCAAACTCATCACCATAGACATCAGCCAAGCCAGG 4975
Query 66017 ACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAG 66076
|||||| | || ||||| | | ||| ||||||| | | || || ||||| |||||
Sbjct 4974 ACATTCGTTGGGGCACATGAGTGTCCAATCTCCGTTCTTTTCAACACGCTTCATGAAGAG 4915
Query 66077 ATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATT 66136
||| |||||||| || || ||| | || | | || | |||||| ||||| |||
Sbjct 4914 ATCTGGAATCCAGAGGGCATAAAAGAGGTCGCGTGCTCGAACTTCCTCCTTTCCATGATT 4855
Query 66137 CTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATGGCCAT 66196
|||| ||||| | ||| | | | ||| |||||| ||||| | ||| ||||| |
Sbjct 4854 CTTTCGGAGATCCAAAAACTCAAAGACATCCGCATGCCATGGTTCAAGGTAGATGGCGAA 4795
Query 66197 AACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCT 66256
| ||||| || ||||| || || ||||| | ||||||||||| || || ||||||
Sbjct 4794 TGCACCAGGGCGCTTGTTACCACCTTGATCGACATATCTAGCGGTATTGTTGAAAACTCG 4735
Query 66257 CAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGC 66316
| ||| |||| ||||| || || | ||||| || || | || || ||| | ||
Sbjct 4734 AAGCATAGGAACGATACCGTTAGAATTTCCATTTGTGCCAGCAATGTATGCACCAGTAGC 4675
Query 66317 ACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCG 66376
|||||| | || ||||| || || || || | ||||| || | || ||
Sbjct 4674 ACGAATTCTGTGGATGTTGAGACCAATACCTCCAGCATTCTTAGAAATCATGGCACAAAT 4615
Query 66377 TTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCT 66436
|| || |||||||| || || || |||||||| ||| |||||| || || || ||
Sbjct 4614 CTTCAAAGTATCATAAATTCCATCAATACTATCCTCCTTCATGTCAATGAGGAAGCATGA 4555
Query 66437 AGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCA 66496
||| | |||| | || ||||| || | || ||||||||||| ||||| |
Sbjct 4554 AGAAAGTTGGGCTTGTGGTGTACCCGCGGAGAAGAGTGTTGGAGAAGCGTGTGTAAAGTA 4495
Query 66497 TTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATC-CCATTGATGAATTC 66555
||| | || | || ||||| || ||||| || || ||||| || | ||||| |
Sbjct 4494 TTTGTTGGACATTAAGTTGTAGGTTTCAATGGCGCTCTCGATATCATCACCG-TGAATAC 4436
Query 66556 CTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCA 66615
| || || |||||||| | ||| || || || | |||| | | || | | |
Sbjct 4435 CAACGGCAACACGCATAATCATTTGTTGTGGACGTTCAGCAACTTTTCCATCGAGGCGGA 4376
Query 66616 ACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGT 66675
| ||| ||| | || | ||| || || || || || | ||| |||||||| ||||
Sbjct 4375 GGAGGTATGATCTCTCAAGAGTCTTGAATCCGAAGTATTGGTAGTTGAAGTCTCGATCGT 4316
Query 66676 AAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCATGGTAATACTTG 66735
||| ||| | ||||| |||| ||| || | | |||| |||| ||| | ||||
Sbjct 4315 AAACGATAGCAGAGTTAAGTTCTGCCTCATGTCTCATAAC-ACATTCATATGTTTCCTTG 4257
Query 66736 -AAATAATCGGAGAATGTTTCCCATTTTTAGGATTGACATAGTTGAATAAATCCTCCATC 66794
||| || ||||| | | | |||||||| | || |||| | ||| || ||
Sbjct 4256 CTAATCATGGGAGATTTTGTACCATTTTTGGTGTTCGTGTAGTGGTATAGGTCACTGATG 4197
Query 66795 ACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCT 66854
|| | ||| |||| || |||| ||||| ||||| || || || || | ||| |||
Sbjct 4196 ACATGCGAGAATTGTTTCTTGGTTTGCTTGTGGAGATTGGAAACTGCAATACGAGCAGCT 4137
Query 66855 ATAATGGCATAATCCGGATG 66874
| ||||||||||| |||||
Sbjct 4136 AAGATGGCATAATCGGGATG 4117
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 658075908736680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |