Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20sydowiana_20[genbank_20GCA_5F000812895.1_202014-12-31] 11,777 sequences; 51,994,176 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq10763 419 3e-112 seq10338 143 4e-29 >seq10763 Length=10051 Score = 419 bits (464), Expect = 3e-112 Identities = 1342/2064 (65%), Gaps = 47/2064 (2%) Strand=Plus/Minus Query 78718 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 78777 ||||||||||| || || || || | | ||||| |||||||||||||| || || ||| Sbjct 6161 GTGAATTGAATTGGTGCCGAAGCAGCCATAGTACGGAGATAGTACATTCCAGTCTTGAGA 6102 Query 78778 CCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 78837 || | ||||||| ||||||||| || | ||| | || || || Sbjct 6101 CCCAATTTCCATCCAGCGAAATGCATGGAAGTGATCTTGCCCATTGTAGGGTCCTTCATG 6042 Query 78838 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 78897 || || ||||| |||||| |||||| ||||| || || | |||||| ||||||| | Sbjct 6041 TGAATGTTCATCGATTGAGATTGATCAATGAAAGCACCACGGTCTGCGGCCATTTGAACA 5982 Query 78898 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 78957 || | ||| | |||||||||| || || || | ||||| || |||||| | Sbjct 5981 ATGTTTCGTTGAGAGATTTCCCAAACGGTCTTGTAGAGAGCTTTAATCTCGGCTGGAATG 5922 Query 78958 TTTG---TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCTTCATTC 79014 || | |||| |||||||| |||||||| || || || | |||||| || | ||| | Sbjct 5921 TTGGGAATATTTTGAATGGAACCACCATCAGCGATGATACGATTCTTCATGTTATCAGAC 5862 Query 79015 CATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCA 79074 || | | | ||| ||| | |||| || || ||||| ||||| || || || Sbjct 5861 CAAAGTCCCATGTCGACCAAATCCTTAAGAAGCCATGGGTTAACGACTTGGAACTCACCG 5802 Query 79075 GACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACCGATTCATTATTTCCC 79134 | ||| || | || | |||||| || || ||||| || | ||||||| || Sbjct 5801 GCCAACACACGGCGTGAGTAAATGTTGGAAGTGTATGGCTCGAAACATTCATTGAAACCG 5742 Query 79135 AAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCG 79194 | |||||||| || || ||||||||||| || || | |||||||| | | ||| Sbjct 5741 AGAATTTGAGATGTGCTGGCAGTTGGCATAGGAGCAACAAGCAAACTATTCCGGATACCA 5682 Query 79195 TATGATCTGATTTTATCTTTTAGAGATTCCCAATCCCAAAGATCAGACGGGACAACATTC 79254 | | |||| | || ||||| ||||||||||||||||| | || |||| | Sbjct 5681 TGTTGCTTGATAGATTGCTTGAGAGAATCCCAATCCCAAAGATCCGTAGGAGTAACACCC 5622 Query 79255 CAAAGATCATATTGTAGAATACCGTT----ACTAGCGTATGATCCTGTGTATGTTTCATA 79310 || | ||||||||| || ||| || ||| | | ||||| |||| || || Sbjct 5621 CACATATCATATTGAAGCTCACCCTTGGAGACTGGAG----ATCCTTCATATGACTCGTA 5566 Query 79311 AGGTCCT---TCCTTTTCGGCTAATTCA-CAACTCGCCTCTAATGCTCCGTAATAAATGG 79366 || ||| ||||| ||||| | | || | || || || |||| || |||| Sbjct 5565 TGGGCCTAATTCCTT---GGCTATCTGAACAGATGAAGTCAAA-GCACCGTGGTAGATGG 5510 Query 79367 TTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGGATAATTTAAGA 79426 | || || || | | ||||||| | ||||| | ||| ||||| ||| ||| Sbjct 5509 TCTCAAAGATTTGGATGTTGAGATGCTTCGCTTCGGGTGAATCGAATGG-TAAACGGAGA 5451 Query 79427 GAATA-AACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTA 79485 | | || || || || | ||||||||||||| | | ||||||| ||| | ||| Sbjct 5450 GCCAAGAAGGCATCAGCAAGACCTTGAACACCAACAGCAATAGGTCGATGACGGAAATTG 5391 Query 79486 GAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTCCTG 79545 || |||||| | ||||| ||||| ||||| ||||| || || | || ||| Sbjct 5390 CTTCTTCTGGCTTCTTCGACGGGATAGTAATTGATATCGATAATCTTGTTCAAGTTTCTG 5331 Query 79546 ACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAA-------TCGTCCATCTAT 79598 || | |||| || || || | || || | |||||| | ||| |||| | | Sbjct 5330 ACAACAACTTGAACGACCTCGTGAAGCTTTTGGAAATCATAAGTTCCCTCGGCCATGT-T 5272 Query 79599 TACAAACATGTTCAACGCGACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGC 79658 ||||| | | || | ||| |||| |||||| || ||||||| || | | Sbjct 5271 GACAAAGGTTGGGAGAGCAATAGAAGCCAAATTACAGCAAGCAACCTCATCAGGTGCAGA 5212 Query 79659 ATATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATT 79718 |||| | ||||| ||||| | ||| | || || || | ||| | |||||| Sbjct 5211 GTATTCGACGATTTCCGTGCACAAGTTGGAGCTGCGGATTGTGCCGAGATTCTTTTGATT 5152 Query 79719 ACTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGA 79778 ||||||||||| || ||||| || ||||| ||||| || | || || ||| |||| | Sbjct 5151 GCTCTTTTTGTTGCAAGCATCTTTGTAAAGCATGAAAGGGTTTCCTGTCTCAGTCTGTGC 5092 Query 79779 TTCTATAATCGCTTTCCAGACGACTCGAGCCTTTAT-----TATAGACTTGTATCTCTTT 79833 || | || | | ||| | | ||||||| || || | ||| || || || Sbjct 5091 CTCGAGGATAGAATACCAAAGCTTTTGAGCCTTGATAGTCTTACGGCCTT-TACCTTGTT 5033 Query 79834 TCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCA 79893 |||| ||| ||| | ||| ||||| || || | ||||| | || ||| Sbjct 5032 TCTC----GTAACCCTCATAAAGAGCTTCAAACTCATCACCATAGACATCAGCCAAGCCA 4977 Query 79894 GGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTT--ACTCGTTTCATAA 79951 |||||||||| || ||||| | | ||| ||||| | || ||| || || ||||| | Sbjct 4976 GGACATTCGTTGGGGCACATGAGTGTCCAATCTCCGT--TCTTTTCAACACGCTTCATGA 4919 Query 79952 AGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTG 80011 ||||||| |||||||| || || ||| || || | | || | ||||| ||||| Sbjct 4918 AGAGATCTGGAATCCAGAGGGCATAAAAGAGGTCGCGTGCTCGAACTTCCTCCTTTCCAT 4859 Query 80012 TATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGG 80071 ||||||| ||||| | ||| | | | ||| | |||||| ||||| | ||| |||| Sbjct 4858 GATTCTTTCGGAGATCCAAAAACTCAAAGACATCCGCATGCCATGGTTCAAGGTAGATGG 4799 Query 80072 CCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAA 80131 | | | || || || ||||| || || ||||| | ||||||||||| || || ||| Sbjct 4798 CGAATGCACCAGGGCGCTTGTTACCACCTTGATCGACATATCTAGCGGTATTGTTGAAAA 4739 Query 80132 CTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCAC 80191 ||| | ||| |||| ||||| || || | ||||| || || | || || ||| Sbjct 4738 CTCGAAGCATAGGAACGATACCGTTAGAATTTCCATTTGTGCCAGCAATGTATGCACCAG 4679 Query 80192 TGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGC 80251 | |||||||| | || ||||| || || || || | ||||| || | || | Sbjct 4678 TAGCACGAATTCTGTGGATGTTGAGACCAATACCTCCAGCATTCTTAGAAATCATGGCAC 4619 Query 80252 ATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAAC 80311 | || || |||||||| || || || || ||||| || |||||| || || || | Sbjct 4618 AAATCTTCAAAGTATCATAAATTCCATCAATACTATCCTCCTTCATGTCAATGAGGAAGC 4559 Query 80312 AGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAA 80371 | ||| | |||| | || ||||| || | || ||||||||||| |||| Sbjct 4558 ATGAAGAAAGTTGGGCTTGTGGTGTACCCGCGGAGAAGAGTGTTGGAGAAGCGTGTGTAA 4499 Query 80372 ACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATC-CCATTGATGA 80430 | |||| | |||| || ||||| || ||||| || || ||||| || | ||| Sbjct 4498 AGTATTTGTTGGACATTAAGTTGTAGGTTTCAATGGCGCTCTCGATATCATCACCG-TGA 4440 Query 80431 ATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATT 80490 || || || || |||||||| | ||| || || || | |||| | | || || | Sbjct 4439 ATACCAACGGCAACACGCATAATCATTTGTTGTGGACGTTCAGCAACTTTTCCATCGAGG 4380 Query 80491 TTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGT 80550 | | ||| ||| | || | ||| || || || || || | ||| |||||||| Sbjct 4379 CGGAGGAGGTATGATCTCTCAAGAGTCTTGAATCCGAAGTATTGGTAGTTGAAGTCTCGA 4320 Query 80551 TCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCATGGTGATA 80610 ||||||| ||| | ||||| |||| ||| || | | |||| |||| ||| | Sbjct 4319 TCGTAAACGATAGCAGAGTTAAGTTCTGCCTCATGTCTCATAAC-ACATTCATATGTTTC 4261 Query 80611 CTTG-AAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTC 80669 |||| ||| || ||||| | | | |||||||| | || |||| | ||| || Sbjct 4260 CTTGCTAATCATGGGAGATTTTGTACCATTTTTGGTGTTCGTGTAGTGGTATAGGTCACT 4201 Query 80670 CATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGC 80729 || || | ||| |||| || |||| |||||| ||||| || || || || | || Sbjct 4200 GATGACATGCGAGAATTGTTTCTTGGTTTGCTTGTGGAGATTGGAAACTGCAATACGAGC 4141 Query 80730 GGCTAAAATGGCATAATCTGGATG 80753 ||||| ||||||||||| ||||| Sbjct 4140 AGCTAAGATGGCATAATCGGGATG 4117 >seq10338 Length=29807 Score = 143 bits (158), Expect = 4e-29 Identities = 347/525 (66%), Gaps = 3/525 (1%) Strand=Plus/Minus Query 49656 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTC 49715 |||||| || || ||||| ||| | ||||| || ||||| || || || || || | Sbjct 13448 CATAACACCAGCCTTCTGGTAATCAGCAACACGCTTCTCGAAGAAGTTGGTCTTGCCAGC 13389 Query 49716 CAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCC 49775 | || || ||||||||||| || || || ||||| | |||| |||| | || Sbjct 13388 GAGAGAAATGTTTTCCATGAAGTCGAATGGGTTGGTGGAACGGTAAACCTTTTCATTACC 13329 Query 49776 CAATTCAGAAATCAATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATT 49835 | || || | | || ||||| || || || ||| |||||||| || | || Sbjct 13328 AAGGGCAAGAAGAAGACGGTCTGCGACGAACTCAATGTATTGTTTCATCAGATCCGAGTT 13269 Query 49836 CATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGC 49895 ||| || | || | ||||||||| | || | ||||| || ||||| | || || Sbjct 13268 CATGCCAAGGAGAGCACATGGAAGAGCTTCGGTCAAGAATTCCTGCTCAATTGTAACAGC 13209 Query 49896 ATCTGTTATAATAGATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACAT 49955 ||||| || | | ||||| || || ||| || ||||| || || || | Sbjct 13208 CTCTGTGATGACATCCTGAACGGCTTGTTTACTTGGGCGATGCTTCAAGTGCGAGAAGAG 13149 Query 49956 CAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGT 50015 | || ||||| ||| || ||||||||||| | || || |||||||| || || Sbjct 13148 AAGGCAGGCGAAGTCGGTATGAAGACCCTCGTCACGGGAGATGAGCTCGTTGGAGAAAGT 13089 Query 50016 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAA 50075 || |||| ||| | |||||||| || ||||| || || || || ||||| ||| || Sbjct 13088 AAGACCGGCCATCAAACCACGCTTCTTGAGCCAGAAGATAGAGGCGAATGAACCACTGAA 13029 Query 50076 GAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGG---CGCTGTC 50132 |||||| ||||| || || || || || || || | | || | | | | |||| Sbjct 13028 GAAGATACCTTCAACAGCAGCGAATGCGACGAGACGTTGAGCAAATGTAGATTCTTTGTC 12969 Query 50133 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGG 50177 || ||||| | |||||||||||||||||| || | |||||| Sbjct 12968 TTGGATCCATCTAACAGCCCAATCGGCCTTCTTCTTAATACAAGG 12924 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718163061854280