Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rutstroemia_20sydowiana_20[genbank_20GCA_5F000812895.1_202014-12-31]
11,777 sequences; 51,994,176 total letters
Query= NC_003663.2
Length=224499
Score E
Sequences producing significant alignments: (Bits) Value
seq10763 419 3e-112
seq10338 143 4e-29
>seq10763
Length=10051
Score = 419 bits (464), Expect = 3e-112
Identities = 1342/2064 (65%), Gaps = 47/2064 (2%)
Strand=Plus/Minus
Query 78718 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 78777
||||||||||| || || || || | | ||||| |||||||||||||| || || |||
Sbjct 6161 GTGAATTGAATTGGTGCCGAAGCAGCCATAGTACGGAGATAGTACATTCCAGTCTTGAGA 6102
Query 78778 CCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 78837
|| | ||||||| ||||||||| || | ||| | || || ||
Sbjct 6101 CCCAATTTCCATCCAGCGAAATGCATGGAAGTGATCTTGCCCATTGTAGGGTCCTTCATG 6042
Query 78838 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 78897
|| || ||||| |||||| |||||| ||||| || || | |||||| ||||||| |
Sbjct 6041 TGAATGTTCATCGATTGAGATTGATCAATGAAAGCACCACGGTCTGCGGCCATTTGAACA 5982
Query 78898 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 78957
|| | ||| | |||||||||| || || || | ||||| || |||||| |
Sbjct 5981 ATGTTTCGTTGAGAGATTTCCCAAACGGTCTTGTAGAGAGCTTTAATCTCGGCTGGAATG 5922
Query 78958 TTTG---TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCTTCATTC 79014
|| | |||| |||||||| |||||||| || || || | |||||| || | ||| |
Sbjct 5921 TTGGGAATATTTTGAATGGAACCACCATCAGCGATGATACGATTCTTCATGTTATCAGAC 5862
Query 79015 CATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCA 79074
|| | | | ||| ||| | |||| || || ||||| ||||| || || ||
Sbjct 5861 CAAAGTCCCATGTCGACCAAATCCTTAAGAAGCCATGGGTTAACGACTTGGAACTCACCG 5802
Query 79075 GACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACCGATTCATTATTTCCC 79134
| ||| || | || | |||||| || || ||||| || | ||||||| ||
Sbjct 5801 GCCAACACACGGCGTGAGTAAATGTTGGAAGTGTATGGCTCGAAACATTCATTGAAACCG 5742
Query 79135 AAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCG 79194
| |||||||| || || ||||||||||| || || | |||||||| | | |||
Sbjct 5741 AGAATTTGAGATGTGCTGGCAGTTGGCATAGGAGCAACAAGCAAACTATTCCGGATACCA 5682
Query 79195 TATGATCTGATTTTATCTTTTAGAGATTCCCAATCCCAAAGATCAGACGGGACAACATTC 79254
| | |||| | || ||||| ||||||||||||||||| | || |||| |
Sbjct 5681 TGTTGCTTGATAGATTGCTTGAGAGAATCCCAATCCCAAAGATCCGTAGGAGTAACACCC 5622
Query 79255 CAAAGATCATATTGTAGAATACCGTT----ACTAGCGTATGATCCTGTGTATGTTTCATA 79310
|| | ||||||||| || ||| || ||| | | ||||| |||| || ||
Sbjct 5621 CACATATCATATTGAAGCTCACCCTTGGAGACTGGAG----ATCCTTCATATGACTCGTA 5566
Query 79311 AGGTCCT---TCCTTTTCGGCTAATTCA-CAACTCGCCTCTAATGCTCCGTAATAAATGG 79366
|| ||| ||||| ||||| | | || | || || || |||| || ||||
Sbjct 5565 TGGGCCTAATTCCTT---GGCTATCTGAACAGATGAAGTCAAA-GCACCGTGGTAGATGG 5510
Query 79367 TTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGGATAATTTAAGA 79426
| || || || | | ||||||| | ||||| | ||| ||||| ||| |||
Sbjct 5509 TCTCAAAGATTTGGATGTTGAGATGCTTCGCTTCGGGTGAATCGAATGG-TAAACGGAGA 5451
Query 79427 GAATA-AACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTA 79485
| | || || || || | ||||||||||||| | | ||||||| ||| | |||
Sbjct 5450 GCCAAGAAGGCATCAGCAAGACCTTGAACACCAACAGCAATAGGTCGATGACGGAAATTG 5391
Query 79486 GAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTCCTG 79545
|| |||||| | ||||| ||||| ||||| ||||| || || | || |||
Sbjct 5390 CTTCTTCTGGCTTCTTCGACGGGATAGTAATTGATATCGATAATCTTGTTCAAGTTTCTG 5331
Query 79546 ACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAA-------TCGTCCATCTAT 79598
|| | |||| || || || | || || | |||||| | ||| |||| | |
Sbjct 5330 ACAACAACTTGAACGACCTCGTGAAGCTTTTGGAAATCATAAGTTCCCTCGGCCATGT-T 5272
Query 79599 TACAAACATGTTCAACGCGACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGC 79658
||||| | | || | ||| |||| |||||| || ||||||| || | |
Sbjct 5271 GACAAAGGTTGGGAGAGCAATAGAAGCCAAATTACAGCAAGCAACCTCATCAGGTGCAGA 5212
Query 79659 ATATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATT 79718
|||| | ||||| ||||| | ||| | || || || | ||| | ||||||
Sbjct 5211 GTATTCGACGATTTCCGTGCACAAGTTGGAGCTGCGGATTGTGCCGAGATTCTTTTGATT 5152
Query 79719 ACTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGA 79778
||||||||||| || ||||| || ||||| ||||| || | || || ||| |||| |
Sbjct 5151 GCTCTTTTTGTTGCAAGCATCTTTGTAAAGCATGAAAGGGTTTCCTGTCTCAGTCTGTGC 5092
Query 79779 TTCTATAATCGCTTTCCAGACGACTCGAGCCTTTAT-----TATAGACTTGTATCTCTTT 79833
|| | || | | ||| | | ||||||| || || | ||| || || ||
Sbjct 5091 CTCGAGGATAGAATACCAAAGCTTTTGAGCCTTGATAGTCTTACGGCCTT-TACCTTGTT 5033
Query 79834 TCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCA 79893
|||| ||| ||| | ||| ||||| || || | ||||| | || |||
Sbjct 5032 TCTC----GTAACCCTCATAAAGAGCTTCAAACTCATCACCATAGACATCAGCCAAGCCA 4977
Query 79894 GGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTT--ACTCGTTTCATAA 79951
|||||||||| || ||||| | | ||| ||||| | || ||| || || ||||| |
Sbjct 4976 GGACATTCGTTGGGGCACATGAGTGTCCAATCTCCGT--TCTTTTCAACACGCTTCATGA 4919
Query 79952 AGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTG 80011
||||||| |||||||| || || ||| || || | | || | ||||| |||||
Sbjct 4918 AGAGATCTGGAATCCAGAGGGCATAAAAGAGGTCGCGTGCTCGAACTTCCTCCTTTCCAT 4859
Query 80012 TATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGG 80071
||||||| ||||| | ||| | | | ||| | |||||| ||||| | ||| ||||
Sbjct 4858 GATTCTTTCGGAGATCCAAAAACTCAAAGACATCCGCATGCCATGGTTCAAGGTAGATGG 4799
Query 80072 CCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAA 80131
| | | || || || ||||| || || ||||| | ||||||||||| || || |||
Sbjct 4798 CGAATGCACCAGGGCGCTTGTTACCACCTTGATCGACATATCTAGCGGTATTGTTGAAAA 4739
Query 80132 CTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCAC 80191
||| | ||| |||| ||||| || || | ||||| || || | || || |||
Sbjct 4738 CTCGAAGCATAGGAACGATACCGTTAGAATTTCCATTTGTGCCAGCAATGTATGCACCAG 4679
Query 80192 TGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGC 80251
| |||||||| | || ||||| || || || || | ||||| || | || |
Sbjct 4678 TAGCACGAATTCTGTGGATGTTGAGACCAATACCTCCAGCATTCTTAGAAATCATGGCAC 4619
Query 80252 ATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAAC 80311
| || || |||||||| || || || || ||||| || |||||| || || || |
Sbjct 4618 AAATCTTCAAAGTATCATAAATTCCATCAATACTATCCTCCTTCATGTCAATGAGGAAGC 4559
Query 80312 AGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAA 80371
| ||| | |||| | || ||||| || | || ||||||||||| ||||
Sbjct 4558 ATGAAGAAAGTTGGGCTTGTGGTGTACCCGCGGAGAAGAGTGTTGGAGAAGCGTGTGTAA 4499
Query 80372 ACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATC-CCATTGATGA 80430
| |||| | |||| || ||||| || ||||| || || ||||| || | |||
Sbjct 4498 AGTATTTGTTGGACATTAAGTTGTAGGTTTCAATGGCGCTCTCGATATCATCACCG-TGA 4440
Query 80431 ATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATT 80490
|| || || || |||||||| | ||| || || || | |||| | | || || |
Sbjct 4439 ATACCAACGGCAACACGCATAATCATTTGTTGTGGACGTTCAGCAACTTTTCCATCGAGG 4380
Query 80491 TTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGT 80550
| | ||| ||| | || | ||| || || || || || | ||| ||||||||
Sbjct 4379 CGGAGGAGGTATGATCTCTCAAGAGTCTTGAATCCGAAGTATTGGTAGTTGAAGTCTCGA 4320
Query 80551 TCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCATGGTGATA 80610
||||||| ||| | ||||| |||| ||| || | | |||| |||| ||| |
Sbjct 4319 TCGTAAACGATAGCAGAGTTAAGTTCTGCCTCATGTCTCATAAC-ACATTCATATGTTTC 4261
Query 80611 CTTG-AAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTC 80669
|||| ||| || ||||| | | | |||||||| | || |||| | ||| ||
Sbjct 4260 CTTGCTAATCATGGGAGATTTTGTACCATTTTTGGTGTTCGTGTAGTGGTATAGGTCACT 4201
Query 80670 CATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGC 80729
|| || | ||| |||| || |||| |||||| ||||| || || || || | ||
Sbjct 4200 GATGACATGCGAGAATTGTTTCTTGGTTTGCTTGTGGAGATTGGAAACTGCAATACGAGC 4141
Query 80730 GGCTAAAATGGCATAATCTGGATG 80753
||||| ||||||||||| |||||
Sbjct 4140 AGCTAAGATGGCATAATCGGGATG 4117
>seq10338
Length=29807
Score = 143 bits (158), Expect = 4e-29
Identities = 347/525 (66%), Gaps = 3/525 (1%)
Strand=Plus/Minus
Query 49656 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTC 49715
|||||| || || ||||| ||| | ||||| || ||||| || || || || || |
Sbjct 13448 CATAACACCAGCCTTCTGGTAATCAGCAACACGCTTCTCGAAGAAGTTGGTCTTGCCAGC 13389
Query 49716 CAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCC 49775
| || || ||||||||||| || || || ||||| | |||| |||| | ||
Sbjct 13388 GAGAGAAATGTTTTCCATGAAGTCGAATGGGTTGGTGGAACGGTAAACCTTTTCATTACC 13329
Query 49776 CAATTCAGAAATCAATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATT 49835
| || || | | || ||||| || || || ||| |||||||| || | ||
Sbjct 13328 AAGGGCAAGAAGAAGACGGTCTGCGACGAACTCAATGTATTGTTTCATCAGATCCGAGTT 13269
Query 49836 CATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGC 49895
||| || | || | ||||||||| | || | ||||| || ||||| | || ||
Sbjct 13268 CATGCCAAGGAGAGCACATGGAAGAGCTTCGGTCAAGAATTCCTGCTCAATTGTAACAGC 13209
Query 49896 ATCTGTTATAATAGATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACAT 49955
||||| || | | ||||| || || ||| || ||||| || || || |
Sbjct 13208 CTCTGTGATGACATCCTGAACGGCTTGTTTACTTGGGCGATGCTTCAAGTGCGAGAAGAG 13149
Query 49956 CAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGT 50015
| || ||||| ||| || ||||||||||| | || || |||||||| || ||
Sbjct 13148 AAGGCAGGCGAAGTCGGTATGAAGACCCTCGTCACGGGAGATGAGCTCGTTGGAGAAAGT 13089
Query 50016 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAA 50075
|| |||| ||| | |||||||| || ||||| || || || || ||||| ||| ||
Sbjct 13088 AAGACCGGCCATCAAACCACGCTTCTTGAGCCAGAAGATAGAGGCGAATGAACCACTGAA 13029
Query 50076 GAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGG---CGCTGTC 50132
|||||| ||||| || || || || || || || | | || | | | | ||||
Sbjct 13028 GAAGATACCTTCAACAGCAGCGAATGCGACGAGACGTTGAGCAAATGTAGATTCTTTGTC 12969
Query 50133 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGG 50177
|| ||||| | |||||||||||||||||| || | ||||||
Sbjct 12968 TTGGATCCATCTAACAGCCCAATCGGCCTTCTTCTTAATACAAGG 12924
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 718163061854280
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