Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20sydowiana_20[genbank_20GCA_5F000812895.1_202014-12-31] 11,777 sequences; 51,994,176 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq655 109 4e-19 >seq655 Length=7676 Score = 109 bits (120), Expect = 4e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | | ||||||||| | ||||||||||||||| | || ||||| || Sbjct 3243 CCACCACGGAGACGAAGCACCAAATGTAAAGTGCTCTCCTTTTGGATGTTATAATCCGAA 3302 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || | |||| |||||||| || |||||||| ||||| || |||||||||| || Sbjct 3303 AGAGTTCTACCGTCCTCCAATTGCTTTCCGGCAAAGATCAAACGTTGTTGATCGGGTGGA 3362 Query 43003 ACACCTTCTTTTTCGCTGATC-AACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | |||||| || || |||| ||||| || | ||| || || | || || Sbjct 3363 ATACCTTCCTTGTCTTGGATCTTTGTCTTT-ACGTTATCAATGGTATCTGACGATTCCAC 3421 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || | ||| || || ||||| || | ||| || ||||| ||||||||| Sbjct 3422 TTCCAACGTAATTGTCTTTCCAGTCAAAGTCTTAACAAAGATTTGCATT 3470 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381314861187066