Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20sydowiana_20[genbank_20GCA_5F000812895.1_202014-12-31] 11,777 sequences; 51,994,176 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq10763 347 2e-90 >seq10763 Length=10051 Score = 347 bits (384), Expect = 2e-90 Identities = 1323/2062 (64%), Gaps = 43/2062 (2%) Strand=Plus/Minus Query 70801 GTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATGCCTGTTTTTAGA 70860 || || ||||| || | || || || | ||||| ||||||||||| || || || ||| Sbjct 6161 GTGAATTGAATTGGTGCCGAAGCAGCCATAGTACGGAGATAGTACATTCCAGTCTTGAGA 6102 Query 70861 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGA-ATAGCTAGGATCGGCTAT 70919 || | ||||||| |||||||| || | ||| || | |||| || || Sbjct 6101 CCCAATTTCCATCCAGCGAAATGCATGGAAGTGATCTTGCCCATTG-TAGGGTCCTTCAT 6043 Query 70920 GTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTAT 70979 |||||| |||||||| ||| |||||| ||||| || || | |||||| ||||||| | Sbjct 6042 GTGAATGTTCATCGATTGAGATTGATCAATGAAAGCACCACGGTCTGCGGCCATTTGAAC 5983 Query 70980 GATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAG 71039 || | ||| | |||||||||| || || || | ||||| || |||||| Sbjct 5982 AATGTTTCGTTGAGAGATTTCCCAAACGGTCTTGTAGAGAGCTTTAATCTCGGCTGGAAT 5923 Query 71040 GTTTG---TATTCTGAATGGATCCACCATCTGCAATAATCCTATTTTTGATCTCTTCATT 71096 ||| | |||| |||||||| |||||||| || || || | ||| || || | ||| Sbjct 5922 GTTGGGAATATTTTGAATGGAACCACCATCAGCGATGATACGATTCTTCATGTTATCAGA 5863 Query 71097 CCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACTACTTGAAATTCTCC 71156 ||| | | | ||| ||| | |||| || || ||||| ||||| || || || Sbjct 5862 CCAAAGTCCCATGTCGACCAAATCCTTAAGAAGCCATGGGTTAACGACTTGGAACTCACC 5803 Query 71157 AGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACTGACTCATTATTTCC 71216 | ||| || | || | |||||| || || || || || | | ||||| || Sbjct 5802 GGCCAACACACGGCGTGAGTAAATGTTGGAAGTGTATGGCTCGAAACATTCATTGAAACC 5743 Query 71217 CAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGACTATTTCTAAGACC 71276 | |||||||| || ||||| |||||||| || || | | |||||| | | ||| Sbjct 5742 GAGAATTTGAGATGTGCTGGCAGTTGGCATAGGAGCAACAAGCAAACTATTCCGGATACC 5683 Query 71277 ATGTGATCGGATTTTATCTTTTAGAGATTCCCAATTCCAAAGATCCGATGGTACAACNNN 71336 |||| ||| | || ||||| ||||||| ||||||||||| || ||| Sbjct 5682 ATGTTGCTTGATAGATTGCTTGAGAGAATCCCAATCCCAAAGATCCGTAGGAGTAACACC 5623 Query 71337 NNNNNNNNNNNNNNNNNNNATGCCGTT----ACTAGCGTATGATCCTGCATATGTATCGT 71392 || || ||| | | ||||| |||||| |||| Sbjct 5622 CCACATATCATATTGAAGCTCACCCTTGGAGACTGGAG----ATCCTTCATATGACTCGT 5567 Query 71393 ATGGTCCTTCTTTTTCGGCTAGTTCA-CAACTCGCCTCTAATGCTCCATAATAAATGGTT 71451 |||| ||| || | ||||| | | || | || || || || | || ||||| Sbjct 5566 ATGGGCCTAATTCCTTGGCTATCTGAACAGATGAAGTCAAA-GCACCGTGGTAGATGGTC 5508 Query 71452 TCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGA 71511 || || || | | ||||||| | ||||| || ||| ||||| ||| |||| Sbjct 5507 TCAAAGATTTGGATGTTGAGATGCTTCGCTTCGGGTGAATCGAATGG-TAAACGGAGAGC 5449 Query 71512 ATA-AACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTCTCTTATTAGA 71570 | || || || || | |||||||| |||| | | ||||||| || | ||| Sbjct 5448 CAAGAAGGCATCAGCAAGACCTTGAACACCAACAGCAATAGGTCGATGACGGAAATTGCT 5389 Query 71571 AATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGAC 71630 || |||||| | ||||| ||||| ||||| ||||| || || | |||||||| Sbjct 5388 TCTTCTGGCTTCTTCGACGGGATAGTAATTGATATCGATAATCTTGTTCAAGTTTCTGAC 5329 Query 71631 TATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCTCCCATC-----TATT-AC 71684 | |||| || || || | || || | |||||| | | || || | || || Sbjct 5328 AACAACTTGAACGACCTCGTGAAGCTTTTGGAAATCATAAGTTCCCTCGGCCATGTTGAC 5269 Query 71685 AAACACGTTCA-AG-GCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCA 71742 ||| ||| || |||| ||| |||| |||||| || ||||||| || | | Sbjct 5268 AAAG--GTTGGGAGAGCAATAGAAGCCAAATTACAGCAAGCAACCTCATCAGGTGCAGAG 5211 Query 71743 TATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTA 71802 |||| | ||||| ||||| | || | ||| || || | ||| | |||||| Sbjct 5210 TATTCGACGATTTCCGTGCACAAGTTGGAGCTGCGGATTGTGCCGAGATTCTTTTGATTG 5151 Query 71803 CTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGAT 71862 ||||||||||| || ||||| || ||||| || || || | || || ||| |||| | Sbjct 5150 CTCTTTTTGTTGCAAGCATCTTTGTAAAGCATGAAAGGGTTTCCTGTCTCAGTCTGTGCC 5091 Query 71863 TCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATATT----CTTGTATCTCTTTTC 71918 || | || | | ||| | | ||||||| || | || | | || || |||| Sbjct 5090 TCGAGGATAGAATACCAAAGCTTTTGAGCCTTGATAGTCTTACGGCCTTTACCTTGTTTC 5031 Query 71919 TCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGG 71978 || ||| ||| | ||| ||||| || || | ||| | || ||||| Sbjct 5030 TC----GTAACCCTCATAAAGAGCTTCAAACTCATCACCATAGACATCAGCCAAGCCAGG 4975 Query 71979 ACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTT--ACTCGTTTCATAAAG 72036 |||||| || || ||||| | || ||| ||||| | || ||| || || ||||| ||| Sbjct 4974 ACATTCGTTGGGGCACATGAGTGTCCAATCTCCGT--TCTTTTCAACACGCTTCATGAAG 4917 Query 72037 AGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTA 72096 ||||| |||||||| || || ||| || || | | || | ||||| ||||| | Sbjct 4916 AGATCTGGAATCCAGAGGGCATAAAAGAGGTCGCGTGCTCGAACTTCCTCCTTTCCATGA 4857 Query 72097 TTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCC 72156 |||||| ||||| | ||| | | | ||| | |||||| ||||| | ||| ||||| Sbjct 4856 TTCTTTCGGAGATCCAAAAACTCAAAGACATCCGCATGCCATGGTTCAAGGTAGATGGCG 4797 Query 72157 ATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACT 72216 | | || || || ||||| || || ||||| | ||||||||||| || || ||||| Sbjct 4796 AATGCACCAGGGCGCTTGTTACCACCTTGATCGACATATCTAGCGGTATTGTTGAAAACT 4737 Query 72217 CTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTG 72276 | | ||| |||| ||||| || || ||||| || || | || || ||| | Sbjct 4736 CGAAGCATAGGAACGATACCGTTAGAATTTCCATTTGTGCCAGCAATGTATGCACCAGTA 4677 Query 72277 GCACGAATATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCAT 72336 |||||||| || || ||||| || || || || | ||||| || | || || Sbjct 4676 GCACGAATTCTGTGGATGTTGAGACCAATACCTCCAGCATTCTTAGAAATCATGGCACAA 4617 Query 72337 CGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAG 72396 || || |||||||| || || || |||||||| ||| |||||| || || || || Sbjct 4616 ATCTTCAAAGTATCATAAATTCCATCAATACTATCCTCCTTCATGTCAATGAGGAAGCAT 4557 Query 72397 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 72456 ||| | |||| | || ||||| || | || ||||||||||| ||||| Sbjct 4556 GAAGAAAGTTGGGCTTGTGGTGTACCCGCGGAGAAGAGTGTTGGAGAAGCGTGTGTAAAG 4497 Query 72457 CATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATC-CCATTGATGTAT 72515 |||| | |||| || ||||| || ||||| || || ||||| || | || || Sbjct 4496 TATTTGTTGGACATTAAGTTGTAGGTTTCAATGGCGCTCTCGATATCATCACCG-TGAAT 4438 Query 72516 TCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTT 72575 || || || |||||||| | ||| || || || | |||| | | || || | Sbjct 4437 ACCAACGGCAACACGCATAATCATTTGTTGTGGACGTTCAGCAACTTTTCCATCGAGGCG 4378 Query 72576 CAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTC 72635 | | ||| ||| | || | ||| || || || || || | ||| |||||||| || Sbjct 4377 GAGGAGGTATGATCTCTCAAGAGTCTTGAATCCGAAGTATTGGTAGTTGAAGTCTCGATC 4318 Query 72636 GTAAATAATAACCGAATTGAGTTTATCCTTATATTTGTTAACTATATCCATGGTGATACT 72695 ||||| ||| | || || |||| ||| || | | |||| | || ||| | || Sbjct 4317 GTAAACGATAGCAGAGTTAAGTTCTGCCTCATGTCTCATAAC-ACATTCATATGTTTCCT 4259 Query 72696 TG-AAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCA 72754 || ||| || ||||| | | | |||||||| | || |||| | ||| || | Sbjct 4258 TGCTAATCATGGGAGATTTTGTACCATTTTTGGTGTTCGTGTAGTGGTATAGGTCACTGA 4199 Query 72755 TCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGG 72814 | || | ||| |||| || |||| |||||| ||||| || || || || | || | Sbjct 4198 TGACATGCGAGAATTGTTTCTTGGTTTGCTTGTGGAGATTGGAAACTGCAATACGAGCAG 4139 Query 72815 CTAGAATGGCATAATCTGGATG 72836 ||| ||||||||||| ||||| Sbjct 4138 CTAAGATGGCATAATCGGGATG 4117 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671040399920520