Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rutstroemia_20sydowiana_20[genbank_20GCA_5F000812895.1_202014-12-31]
11,777 sequences; 51,994,176 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq10763 347 2e-90
>seq10763
Length=10051
Score = 347 bits (384), Expect = 2e-90
Identities = 1323/2062 (64%), Gaps = 43/2062 (2%)
Strand=Plus/Minus
Query 70801 GTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATGCCTGTTTTTAGA 70860
|| || ||||| || | || || || | ||||| ||||||||||| || || || |||
Sbjct 6161 GTGAATTGAATTGGTGCCGAAGCAGCCATAGTACGGAGATAGTACATTCCAGTCTTGAGA 6102
Query 70861 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGA-ATAGCTAGGATCGGCTAT 70919
|| | ||||||| |||||||| || | ||| || | |||| || ||
Sbjct 6101 CCCAATTTCCATCCAGCGAAATGCATGGAAGTGATCTTGCCCATTG-TAGGGTCCTTCAT 6043
Query 70920 GTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTAT 70979
|||||| |||||||| ||| |||||| ||||| || || | |||||| ||||||| |
Sbjct 6042 GTGAATGTTCATCGATTGAGATTGATCAATGAAAGCACCACGGTCTGCGGCCATTTGAAC 5983
Query 70980 GATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAG 71039
|| | ||| | |||||||||| || || || | ||||| || ||||||
Sbjct 5982 AATGTTTCGTTGAGAGATTTCCCAAACGGTCTTGTAGAGAGCTTTAATCTCGGCTGGAAT 5923
Query 71040 GTTTG---TATTCTGAATGGATCCACCATCTGCAATAATCCTATTTTTGATCTCTTCATT 71096
||| | |||| |||||||| |||||||| || || || | ||| || || | |||
Sbjct 5922 GTTGGGAATATTTTGAATGGAACCACCATCAGCGATGATACGATTCTTCATGTTATCAGA 5863
Query 71097 CCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACTACTTGAAATTCTCC 71156
||| | | | ||| ||| | |||| || || ||||| ||||| || || ||
Sbjct 5862 CCAAAGTCCCATGTCGACCAAATCCTTAAGAAGCCATGGGTTAACGACTTGGAACTCACC 5803
Query 71157 AGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACTGACTCATTATTTCC 71216
| ||| || | || | |||||| || || || || || | | ||||| ||
Sbjct 5802 GGCCAACACACGGCGTGAGTAAATGTTGGAAGTGTATGGCTCGAAACATTCATTGAAACC 5743
Query 71217 CAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGACTATTTCTAAGACC 71276
| |||||||| || ||||| |||||||| || || | | |||||| | | |||
Sbjct 5742 GAGAATTTGAGATGTGCTGGCAGTTGGCATAGGAGCAACAAGCAAACTATTCCGGATACC 5683
Query 71277 ATGTGATCGGATTTTATCTTTTAGAGATTCCCAATTCCAAAGATCCGATGGTACAACNNN 71336
|||| ||| | || ||||| ||||||| ||||||||||| || |||
Sbjct 5682 ATGTTGCTTGATAGATTGCTTGAGAGAATCCCAATCCCAAAGATCCGTAGGAGTAACACC 5623
Query 71337 NNNNNNNNNNNNNNNNNNNATGCCGTT----ACTAGCGTATGATCCTGCATATGTATCGT 71392
|| || ||| | | ||||| |||||| ||||
Sbjct 5622 CCACATATCATATTGAAGCTCACCCTTGGAGACTGGAG----ATCCTTCATATGACTCGT 5567
Query 71393 ATGGTCCTTCTTTTTCGGCTAGTTCA-CAACTCGCCTCTAATGCTCCATAATAAATGGTT 71451
|||| ||| || | ||||| | | || | || || || || | || |||||
Sbjct 5566 ATGGGCCTAATTCCTTGGCTATCTGAACAGATGAAGTCAAA-GCACCGTGGTAGATGGTC 5508
Query 71452 TCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGA 71511
|| || || | | ||||||| | ||||| || ||| ||||| ||| ||||
Sbjct 5507 TCAAAGATTTGGATGTTGAGATGCTTCGCTTCGGGTGAATCGAATGG-TAAACGGAGAGC 5449
Query 71512 ATA-AACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTCTCTTATTAGA 71570
| || || || || | |||||||| |||| | | ||||||| || | |||
Sbjct 5448 CAAGAAGGCATCAGCAAGACCTTGAACACCAACAGCAATAGGTCGATGACGGAAATTGCT 5389
Query 71571 AATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGAC 71630
|| |||||| | ||||| ||||| ||||| ||||| || || | ||||||||
Sbjct 5388 TCTTCTGGCTTCTTCGACGGGATAGTAATTGATATCGATAATCTTGTTCAAGTTTCTGAC 5329
Query 71631 TATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCTCCCATC-----TATT-AC 71684
| |||| || || || | || || | |||||| | | || || | || ||
Sbjct 5328 AACAACTTGAACGACCTCGTGAAGCTTTTGGAAATCATAAGTTCCCTCGGCCATGTTGAC 5269
Query 71685 AAACACGTTCA-AG-GCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCA 71742
||| ||| || |||| ||| |||| |||||| || ||||||| || | |
Sbjct 5268 AAAG--GTTGGGAGAGCAATAGAAGCCAAATTACAGCAAGCAACCTCATCAGGTGCAGAG 5211
Query 71743 TATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTA 71802
|||| | ||||| ||||| | || | ||| || || | ||| | ||||||
Sbjct 5210 TATTCGACGATTTCCGTGCACAAGTTGGAGCTGCGGATTGTGCCGAGATTCTTTTGATTG 5151
Query 71803 CTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGAT 71862
||||||||||| || ||||| || ||||| || || || | || || ||| |||| |
Sbjct 5150 CTCTTTTTGTTGCAAGCATCTTTGTAAAGCATGAAAGGGTTTCCTGTCTCAGTCTGTGCC 5091
Query 71863 TCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATATT----CTTGTATCTCTTTTC 71918
|| | || | | ||| | | ||||||| || | || | | || || ||||
Sbjct 5090 TCGAGGATAGAATACCAAAGCTTTTGAGCCTTGATAGTCTTACGGCCTTTACCTTGTTTC 5031
Query 71919 TCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGG 71978
|| ||| ||| | ||| ||||| || || | ||| | || |||||
Sbjct 5030 TC----GTAACCCTCATAAAGAGCTTCAAACTCATCACCATAGACATCAGCCAAGCCAGG 4975
Query 71979 ACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTT--ACTCGTTTCATAAAG 72036
|||||| || || ||||| | || ||| ||||| | || ||| || || ||||| |||
Sbjct 4974 ACATTCGTTGGGGCACATGAGTGTCCAATCTCCGT--TCTTTTCAACACGCTTCATGAAG 4917
Query 72037 AGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTA 72096
||||| |||||||| || || ||| || || | | || | ||||| ||||| |
Sbjct 4916 AGATCTGGAATCCAGAGGGCATAAAAGAGGTCGCGTGCTCGAACTTCCTCCTTTCCATGA 4857
Query 72097 TTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCC 72156
|||||| ||||| | ||| | | | ||| | |||||| ||||| | ||| |||||
Sbjct 4856 TTCTTTCGGAGATCCAAAAACTCAAAGACATCCGCATGCCATGGTTCAAGGTAGATGGCG 4797
Query 72157 ATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACT 72216
| | || || || ||||| || || ||||| | ||||||||||| || || |||||
Sbjct 4796 AATGCACCAGGGCGCTTGTTACCACCTTGATCGACATATCTAGCGGTATTGTTGAAAACT 4737
Query 72217 CTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTG 72276
| | ||| |||| ||||| || || ||||| || || | || || ||| |
Sbjct 4736 CGAAGCATAGGAACGATACCGTTAGAATTTCCATTTGTGCCAGCAATGTATGCACCAGTA 4677
Query 72277 GCACGAATATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCAT 72336
|||||||| || || ||||| || || || || | ||||| || | || ||
Sbjct 4676 GCACGAATTCTGTGGATGTTGAGACCAATACCTCCAGCATTCTTAGAAATCATGGCACAA 4617
Query 72337 CGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAG 72396
|| || |||||||| || || || |||||||| ||| |||||| || || || ||
Sbjct 4616 ATCTTCAAAGTATCATAAATTCCATCAATACTATCCTCCTTCATGTCAATGAGGAAGCAT 4557
Query 72397 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 72456
||| | |||| | || ||||| || | || ||||||||||| |||||
Sbjct 4556 GAAGAAAGTTGGGCTTGTGGTGTACCCGCGGAGAAGAGTGTTGGAGAAGCGTGTGTAAAG 4497
Query 72457 CATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATC-CCATTGATGTAT 72515
|||| | |||| || ||||| || ||||| || || ||||| || | || ||
Sbjct 4496 TATTTGTTGGACATTAAGTTGTAGGTTTCAATGGCGCTCTCGATATCATCACCG-TGAAT 4438
Query 72516 TCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTT 72575
|| || || |||||||| | ||| || || || | |||| | | || || |
Sbjct 4437 ACCAACGGCAACACGCATAATCATTTGTTGTGGACGTTCAGCAACTTTTCCATCGAGGCG 4378
Query 72576 CAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTC 72635
| | ||| ||| | || | ||| || || || || || | ||| |||||||| ||
Sbjct 4377 GAGGAGGTATGATCTCTCAAGAGTCTTGAATCCGAAGTATTGGTAGTTGAAGTCTCGATC 4318
Query 72636 GTAAATAATAACCGAATTGAGTTTATCCTTATATTTGTTAACTATATCCATGGTGATACT 72695
||||| ||| | || || |||| ||| || | | |||| | || ||| | ||
Sbjct 4317 GTAAACGATAGCAGAGTTAAGTTCTGCCTCATGTCTCATAAC-ACATTCATATGTTTCCT 4259
Query 72696 TG-AAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCA 72754
|| ||| || ||||| | | | |||||||| | || |||| | ||| || |
Sbjct 4258 TGCTAATCATGGGAGATTTTGTACCATTTTTGGTGTTCGTGTAGTGGTATAGGTCACTGA 4199
Query 72755 TCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGG 72814
| || | ||| |||| || |||| |||||| ||||| || || || || | || |
Sbjct 4198 TGACATGCGAGAATTGTTTCTTGGTTTGCTTGTGGAGATTGGAAACTGCAATACGAGCAG 4139
Query 72815 CTAGAATGGCATAATCTGGATG 72836
||| ||||||||||| |||||
Sbjct 4138 CTAAGATGGCATAATCGGGATG 4117
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 671040399920520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |