Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20sydowiana_20[genbank_20GCA_5F000812895.1_202014-12-31] 11,777 sequences; 51,994,176 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq10763 95.1 2e-14 >seq10763 Length=10051 Score = 95.1 bits (104), Expect = 2e-14 Identities = 292/448 (65%), Gaps = 8/448 (2%) Strand=Plus/Plus Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935 || || || || || || || || || | ||| ||||| | ||||| ||||| ||||| Sbjct 4768 CAAGGTGGTAACAAGCGCCCTGGTGCATTCGCCATCTACCTTGAACCATGGCATGCGGAT 4827 Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995 || ||||| ||| | || | || || || ||| || || | ||||| | ||| Sbjct 4828 GTCTTTGAGTTTTTGGATCTCCGAAAGAATCATGGAAAGGAGGAAGTTCGAGCACGCGAC 4887 Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGT---CAACGACGGTGGC 97052 | |||||||| |||||| | |||||| | ||||||||||| || || |||| | Sbjct 4888 CTCTTTTATGCCCTCTGGATTCCAGATCTCTTCATGAAGCGTGTTGAAAAGAACGGAG-- 4945 Query 97053 TACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAG 97112 | |||| || ||||||||| || | || || || | ||| || || || ||| Sbjct 4946 -ATTGGACACTCATGTGCCCCAACGAATGTCCTGGCTTGGCTGATGTCTATGGTGATGAG 5004 Query 97113 TTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGA-TACGTGAGACGAGTCGATGC 97171 ||||| || || || |||||| || | || | ||| |||| | || | || Sbjct 5005 TTTGAAGCTCTTTATGAGGGTTACGAGAAACAAGGTAAAGGCCGTAAGACTA-TCAAGGC 5063 Query 97172 ACGAGAACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCT 97231 | | | || ||| | | ||| | ||| ||| ||||| |||| || | ||| || Sbjct 5064 TCAAAAGCTTTGGTATTCTATCCTCGAGGCACAGACTGAGACAGGAAACCCTTTCATGCT 5123 Query 97232 CTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTC 97291 ||||| ||| | || || ||||| ||| | | ||||| ||| |||| Sbjct 5124 TTACAAAGATGCTTGCAACAAAAAGAGCAATCAAAAGAATCTCGGCACAATCCGCAGCTC 5183 Query 97292 CAATCTGTGCACGGAAATTGTAGAGTAC 97319 ||| ||||||||||||| || || ||| Sbjct 5184 CAACTTGTGCACGGAAATCGTCGAATAC 5211 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740950106822520