Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20sydowiana_20[genbank_20GCA_5F000812895.1_202014-12-31] 11,777 sequences; 51,994,176 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq655 122 6e-23 seq9962 95.1 9e-15 >seq655 Length=7676 Score = 122 bits (134), Expect = 6e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 43912 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTC 43971 ||||||||||| |||||||| ||||| || |||||||| | | | || || Sbjct 3260 CACCAAATGTAAAGTGCTCTCCTTTTGGATGTTATAATCCGAAAGAGTTCTACCGTCCTC 3319 Query 43972 CAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGA 44031 |||||| ||||| ||||| ||||| ||||| || || | || | |||||| || ||| Sbjct 3320 CAATTGCTTTCCGGCAAAGATCAAACGTTGTTGATCGGGTGGAATACCTTCCTTGTCTTG 3379 Query 44032 AATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTT 44091 || ||| || || || ||| ||||||| || ||||| || | ||||||||| || Sbjct 3380 GATCTTTGTCTTTACGTTATCAATGGTATCTGACGATTCCACTTCCAACGTAATTGTCTT 3439 Query 44092 ACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || || |||||||| ||||| |||||||| Sbjct 3440 TCCAGTCAAAGTCTTAACAAAGATTTGCAT 3469 >seq9962 Length=55051 Score = 95.1 bits (104), Expect = 9e-15 Identities = 137/190 (72%), Gaps = 5/190 (3%) Strand=Plus/Plus Query 43917 AATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCT--CATCGTCCAA 43974 |||||| |||||||| ||||| | ||||||||| | || | || |||| ||||| Sbjct 10920 AATGTAAGGTGCTCTCCTTTTGGAAATTATAATC--TGAAAGAATTCTACCATCCTCCAA 10977 Query 43975 TTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAAT 44034 | ||| |||||||||||||| ||||| ||||| | || | | |||| || ||| || Sbjct 10978 TACTTT-CCTGCAAATATCAATCGTTGTTGGTCGGGTGGAATATCTTCCTTGTCTTGGAT 11036 Query 44035 TTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACC 44094 ||| | ||| || ||| ||||||| || ||||| || | ||||||||| || || Sbjct 11037 CTTTGTCTGGACATTATCAATGGTATCTGACGATTCCACTTCCAACGTAATTGTCTTTCC 11096 Query 44095 GGTTAAAGTC 44104 || || ||| Sbjct 11097 AGTCAAGGTC 11106 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354726677994996