Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rutstroemia_20sydowiana_20[genbank_20GCA_5F000812895.1_202014-12-31]
11,777 sequences; 51,994,176 total letters
Query= NC_005068.1
Length=110907
Score E
Sequences producing significant alignments: (Bits) Value
seq655 122 6e-23
seq9962 95.1 9e-15
>seq655
Length=7676
Score = 122 bits (134), Expect = 6e-23
Identities = 153/210 (73%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 43912 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTC 43971
||||||||||| |||||||| ||||| || |||||||| | | | || ||
Sbjct 3260 CACCAAATGTAAAGTGCTCTCCTTTTGGATGTTATAATCCGAAAGAGTTCTACCGTCCTC 3319
Query 43972 CAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGA 44031
|||||| ||||| ||||| ||||| ||||| || || | || | |||||| || |||
Sbjct 3320 CAATTGCTTTCCGGCAAAGATCAAACGTTGTTGATCGGGTGGAATACCTTCCTTGTCTTG 3379
Query 44032 AATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTT 44091
|| ||| || || || ||| ||||||| || ||||| || | ||||||||| ||
Sbjct 3380 GATCTTTGTCTTTACGTTATCAATGGTATCTGACGATTCCACTTCCAACGTAATTGTCTT 3439
Query 44092 ACCGGTTAAAGTCTTCACAAATATTTGCAT 44121
|| || |||||||| ||||| ||||||||
Sbjct 3440 TCCAGTCAAAGTCTTAACAAAGATTTGCAT 3469
>seq9962
Length=55051
Score = 95.1 bits (104), Expect = 9e-15
Identities = 137/190 (72%), Gaps = 5/190 (3%)
Strand=Plus/Plus
Query 43917 AATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCT--CATCGTCCAA 43974
|||||| |||||||| ||||| | ||||||||| | || | || |||| |||||
Sbjct 10920 AATGTAAGGTGCTCTCCTTTTGGAAATTATAATC--TGAAAGAATTCTACCATCCTCCAA 10977
Query 43975 TTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAAT 44034
| ||| |||||||||||||| ||||| ||||| | || | | |||| || ||| ||
Sbjct 10978 TACTTT-CCTGCAAATATCAATCGTTGTTGGTCGGGTGGAATATCTTCCTTGTCTTGGAT 11036
Query 44035 TTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACC 44094
||| | ||| || ||| ||||||| || ||||| || | ||||||||| || ||
Sbjct 11037 CTTTGTCTGGACATTATCAATGGTATCTGACGATTCCACTTCCAACGTAATTGTCTTTCC 11096
Query 44095 GGTTAAAGTC 44104
|| || |||
Sbjct 11097 AGTCAAGGTC 11106
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 354726677994996
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |