Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20sydowiana_20[genbank_20GCA_5F000812895.1_202014-12-31] 11,777 sequences; 51,994,176 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq655 120 7e-22 seq1542 91.5 3e-13 >seq655 Length=7676 Score = 120 bits (132), Expect = 7e-22 Identities = 155/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || | |||||| || || || || || ||||| || || |||||||||||||| Sbjct 3257 AAGCACCAAATGTAAAGTGCTCTCCTTTTGGATGTTATAATCCGAAAGAGTTCTACCGTC 3316 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 || | ||| ||||| ||||| || | | |||||||| || || || ||||| || || Sbjct 3317 CTCCAATTGCTTTCCGGCAAAGATCAAACGTTGTTGATCGGGTGGAATACCTTCCTTGTC 3376 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 || ||||||| ||||| || || | |||||| | ||| || || | ||||| || Sbjct 3377 TTGGATCTTTGTCTTTACGTTATCAATGGTATCTGACGATTCCACTTCCAACGTAATTGT 3436 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 ||| ||||| | || || ||||| || |||||| Sbjct 3437 CTTTCCAGTCAAAGTCTTAACAAAGATTTGCATT 3470 Score = 118 bits (130), Expect = 2e-21 Identities = 140/190 (74%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || ||||| | ||||| || ||||| || || ||||| || || || | || || Sbjct 3999 AGGACGAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCC 4058 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || ||||| || |||||||| || | | |||||| |||||||| || || || |||||| Sbjct 4059 TCAAGTTGCTTGCCAGCAAAGATCAAACGCTGTTGGTCAGGAGGGATACCCTCCTTATCC 4118 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 |||||||| | || ||||| || | || ||| || ||| ||||| || || || ||| Sbjct 4119 TGAATCTTGGTCTTGACATTGTCGATAGTGTCGGAAGATTCAACCTCAAGGGTGATGGTC 4178 Query 104528 TTACCAGTAA 104537 || || |||| Sbjct 4179 TTGCCGGTAA 4188 Score = 107 bits (118), Expect = 4e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 104342 AGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTA 104401 || || || || | ||| | || ||||| || || || || ||||| || || || | Sbjct 3708 AGTCTGAGAACCAAATGGAGAGTCGATTCCTTTTGGATGTTGTAGTCGGAAAGTGTGCGG 3767 Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461 || ||||| |||||||| ||||| || || | | || ||||||||||| || || || Sbjct 3768 CCATCTTCGAGTTGTTTACCAGCGAAGATCAAACGTTGCTGATCAGGAGGGATACCCTCC 3827 Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTA 104521 ||||| |||||||| | || || || || | || || || ||| ||||| || || Sbjct 3828 TTATCTTGAATCTTAGTCTTAACGTTGTCGATAGTGTCCGAAGATTCAACCTCAAGAGTG 3887 Query 104522 ATAGTCTTACCAGTAAGTGTTTTTACAAATAT 104553 |||||||| || ||||| || || || | ||| Sbjct 3888 ATAGTCTTTCCGGTAAGAGTCTTGACGACTAT 3919 >seq1542 Length=1987 Score = 91.5 bits (100), Expect = 3e-13 Identities = 120/164 (73%), Gaps = 2/164 (1%) Strand=Plus/Plus Query 104388 CAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAG 104447 || ||| || ||||| ||||| | ||||| |||||| | || | | |||||||| | Sbjct 921 CAAATACAGACCTACCATCTTCCAATTGTTCCCCAGCATATATCAAGCGTTGTTGATCCG 980 Query 104448 GAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATC-GCTAGGT 104506 ||||||| || ||||||||||||||||| |||||||||| || | ||||| | || Sbjct 981 GAGGTATGCCCTCTTTATCCTGAATCTTGACTTTTACATTATCAATAGTATCAGATA-TA 1039 Query 104507 TCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAA 104550 | || | || ||| || || ||||| ||||| || ||||| Sbjct 1040 TGAACTGCGAGGACAATTGTTTTGCCAGTTAGTGTCTTGACAAA 1083 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151224662257116