Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rutstroemia_20sydowiana_20[genbank_20GCA_5F000812895.1_202014-12-31]
11,777 sequences; 51,994,176 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq655 120 7e-22
seq1542 91.5 3e-13
>seq655
Length=7676
Score = 120 bits (132), Expect = 7e-22
Identities = 155/214 (72%), Gaps = 0/214 (0%)
Strand=Plus/Plus
Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406
||| || | |||||| || || || || || ||||| || || ||||||||||||||
Sbjct 3257 AAGCACCAAATGTAAAGTGCTCTCCTTTTGGATGTTATAATCCGAAAGAGTTCTACCGTC 3316
Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466
|| | ||| ||||| ||||| || | | |||||||| || || || ||||| || ||
Sbjct 3317 CTCCAATTGCTTTCCGGCAAAGATCAAACGTTGTTGATCGGGTGGAATACCTTCCTTGTC 3376
Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526
|| ||||||| ||||| || || | |||||| | ||| || || | ||||| ||
Sbjct 3377 TTGGATCTTTGTCTTTACGTTATCAATGGTATCTGACGATTCCACTTCCAACGTAATTGT 3436
Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560
||| ||||| | || || ||||| || ||||||
Sbjct 3437 CTTTCCAGTCAAAGTCTTAACAAAGATTTGCATT 3470
Score = 118 bits (130), Expect = 2e-21
Identities = 140/190 (74%), Gaps = 0/190 (0%)
Strand=Plus/Plus
Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407
|| || ||||| | ||||| || ||||| || || ||||| || || || | || ||
Sbjct 3999 AGGACGAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCC 4058
Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467
|| ||||| || |||||||| || | | |||||| |||||||| || || || ||||||
Sbjct 4059 TCAAGTTGCTTGCCAGCAAAGATCAAACGCTGTTGGTCAGGAGGGATACCCTCCTTATCC 4118
Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527
|||||||| | || ||||| || | || ||| || ||| ||||| || || || |||
Sbjct 4119 TGAATCTTGGTCTTGACATTGTCGATAGTGTCGGAAGATTCAACCTCAAGGGTGATGGTC 4178
Query 104528 TTACCAGTAA 104537
|| || ||||
Sbjct 4179 TTGCCGGTAA 4188
Score = 107 bits (118), Expect = 4e-18
Identities = 151/212 (71%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 104342 AGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTA 104401
|| || || || | ||| | || ||||| || || || || ||||| || || || |
Sbjct 3708 AGTCTGAGAACCAAATGGAGAGTCGATTCCTTTTGGATGTTGTAGTCGGAAAGTGTGCGG 3767
Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461
|| ||||| |||||||| ||||| || || | | || ||||||||||| || || ||
Sbjct 3768 CCATCTTCGAGTTGTTTACCAGCGAAGATCAAACGTTGCTGATCAGGAGGGATACCCTCC 3827
Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTA 104521
||||| |||||||| | || || || || | || || || ||| ||||| || ||
Sbjct 3828 TTATCTTGAATCTTAGTCTTAACGTTGTCGATAGTGTCCGAAGATTCAACCTCAAGAGTG 3887
Query 104522 ATAGTCTTACCAGTAAGTGTTTTTACAAATAT 104553
|||||||| || ||||| || || || | |||
Sbjct 3888 ATAGTCTTTCCGGTAAGAGTCTTGACGACTAT 3919
>seq1542
Length=1987
Score = 91.5 bits (100), Expect = 3e-13
Identities = 120/164 (73%), Gaps = 2/164 (1%)
Strand=Plus/Plus
Query 104388 CAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAG 104447
|| ||| || ||||| ||||| | ||||| |||||| | || | | |||||||| |
Sbjct 921 CAAATACAGACCTACCATCTTCCAATTGTTCCCCAGCATATATCAAGCGTTGTTGATCCG 980
Query 104448 GAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATC-GCTAGGT 104506
||||||| || ||||||||||||||||| |||||||||| || | ||||| | ||
Sbjct 981 GAGGTATGCCCTCTTTATCCTGAATCTTGACTTTTACATTATCAATAGTATCAGATA-TA 1039
Query 104507 TCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAA 104550
| || | || ||| || || ||||| ||||| || |||||
Sbjct 1040 TGAACTGCGAGGACAATTGTTTTGCCAGTTAGTGTCTTGACAAA 1083
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1151224662257116
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |