Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rutstroemia_20sydowiana_20[genbank_20GCA_5F000812895.1_202014-12-31]
11,777 sequences; 51,994,176 total letters
Query= NC_006549.1
Length=140131
Score E
Sequences producing significant alignments: (Bits) Value
seq655 100 3e-16
>seq655
Length=7676
Score = 100 bits (110), Expect = 3e-16
Identities = 148/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857
|||||| || ||||| |||||||| | ||||||||| | ||| | |||||
Sbjct 3260 CACCAAATGTAAAGTGCTCTCCTTTTGGATGTTATAATCCGAAAGAGTTCTACCGTCCTC 3319
Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917
|| || |||||| ||||||| || | ||| ||||| || ||||||||||| ||||| |
Sbjct 3320 CAATTGCTTTCCGGCAAAGATCAAACGTTGTTGATCGGGTGGAATACCTTCCTTGTCTTG 3379
Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977
|| |||| ||| ||| | | || || | || || || | ||| || || ||
Sbjct 3380 GATCTTTGTCTTTACGTTATCAATGGTATCTGACGATTCCACTTCCAACGTAATTGTCTT 3439
Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|||||| | ||| || |||||||| |||||
Sbjct 3440 TCCAGTCAAAGTCTTAACAAAGATTTGCAT 3469
Score = 98.7 bits (108), Expect = 9e-16
Identities = 147/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858
||||| || ||||| ||||||||||| | ||| |||||| | ||| | |||||||
Sbjct 3489 ACCAAATGTAAAGTCGATTCCTTTTGGATGTTGTAATCGGATAAGGTGCGGCCATCCTCC 3548
Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918
| ||| || || | || || | | ||||||||| || || || || || || || | |
Sbjct 3549 AACTGCTTACCAGCGAAAATGAGACGTTGCTGATCAGGTGGGATGCCCTCCTTATCTTGA 3608
Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978
|| || | ||| || ||| || |||| ||||| || | ||||| || |||
Sbjct 3609 ATCTTAGTCTTCACATTATCGATGGTATCAGACGACTCGACCTCTAATGTGATTGTCTTT 3668
Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|||||||| || || || |||||||||||
Sbjct 3669 CCAGTAAGGGTCTTGACGAAGATCTGCAT 3697
Score = 98.7 bits (108), Expect = 9e-16
Identities = 140/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858
||||| || | ||| ||||||||||| | ||| || ||| | ||| | ||| ||
Sbjct 3717 ACCAAATGGAGAGTCGATTCCTTTTGGATGTTGTAGTCGGAAAGTGTGCGGCCATCTTCG 3776
Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918
|| ||||| || | ||||| || | ||||||||| ||||| ||||| || || || | |
Sbjct 3777 AGTTGTTTACCAGCGAAGATCAAACGTTGCTGATCAGGAGGGATACCCTCCTTATCTTGA 3836
Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978
|| || | ||| ||| | ||| |||||| | || || |||| ||||| || |||
Sbjct 3837 ATCTTAGTCTTAACGTTGTCGATAGTGTCCGAAGATTCAACCTCAAGAGTGATAGTCTTT 3896
Query 94979 CCAGTAAGAGTTTTCAC 94995
|| |||||||| || ||
Sbjct 3897 CCGGTAAGAGTCTTGAC 3913
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448225205931720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |