Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20sydowiana_20[genbank_20GCA_5F000812895.1_202014-12-31] 11,777 sequences; 51,994,176 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq655 100 3e-16 >seq655 Length=7676 Score = 100 bits (110), Expect = 3e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 |||||| || ||||| |||||||| | ||||||||| | ||| | ||||| Sbjct 3260 CACCAAATGTAAAGTGCTCTCCTTTTGGATGTTATAATCCGAAAGAGTTCTACCGTCCTC 3319 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 || || |||||| ||||||| || | ||| ||||| || ||||||||||| ||||| | Sbjct 3320 CAATTGCTTTCCGGCAAAGATCAAACGTTGTTGATCGGGTGGAATACCTTCCTTGTCTTG 3379 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 || |||| ||| ||| | | || || | || || || | ||| || || || Sbjct 3380 GATCTTTGTCTTTACGTTATCAATGGTATCTGACGATTCCACTTCCAACGTAATTGTCTT 3439 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||||| | ||| || |||||||| ||||| Sbjct 3440 TCCAGTCAAAGTCTTAACAAAGATTTGCAT 3469 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 ||||| || ||||| ||||||||||| | ||| |||||| | ||| | ||||||| Sbjct 3489 ACCAAATGTAAAGTCGATTCCTTTTGGATGTTGTAATCGGATAAGGTGCGGCCATCCTCC 3548 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 | ||| || || | || || | | ||||||||| || || || || || || || | | Sbjct 3549 AACTGCTTACCAGCGAAAATGAGACGTTGCTGATCAGGTGGGATGCCCTCCTTATCTTGA 3608 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || || | ||| || ||| || |||| ||||| || | ||||| || ||| Sbjct 3609 ATCTTAGTCTTCACATTATCGATGGTATCAGACGACTCGACCTCTAATGTGATTGTCTTT 3668 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||||||| || || || ||||||||||| Sbjct 3669 CCAGTAAGGGTCTTGACGAAGATCTGCAT 3697 Score = 98.7 bits (108), Expect = 9e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 ||||| || | ||| ||||||||||| | ||| || ||| | ||| | ||| || Sbjct 3717 ACCAAATGGAGAGTCGATTCCTTTTGGATGTTGTAGTCGGAAAGTGTGCGGCCATCTTCG 3776 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 || ||||| || | ||||| || | ||||||||| ||||| ||||| || || || | | Sbjct 3777 AGTTGTTTACCAGCGAAGATCAAACGTTGCTGATCAGGAGGGATACCCTCCTTATCTTGA 3836 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || || | ||| ||| | ||| |||||| | || || |||| ||||| || ||| Sbjct 3837 ATCTTAGTCTTAACGTTGTCGATAGTGTCCGAAGATTCAACCTCAAGAGTGATAGTCTTT 3896 Query 94979 CCAGTAAGAGTTTTCAC 94995 || |||||||| || || Sbjct 3897 CCGGTAAGAGTCTTGAC 3913 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448225205931720