Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20sydowiana_20[genbank_20GCA_5F000812895.1_202014-12-31] 11,777 sequences; 51,994,176 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq2490 118 2e-22 seq11200 116 6e-22 >seq2490 Length=11173 Score = 118 bits (130), Expect = 2e-22 Identities = 87/99 (88%), Gaps = 2/99 (2%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGC-AGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||||||||| |||| |||||| || ||||||||||| ||||| ||||| ||||| Sbjct 9927 GCTAAGCGTCATCGCAAGAT-TCTTCGCGACAACATCCAAGGTATCACAAAGCCTGCTAT 9985 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTC 16530 | | ||||| |||||||||||||| ||||||||| |||| Sbjct 9986 CAGACGTCTCGCTCGTCGTGGTGGTGTCAAGCGTATCTC 10024 >seq11200 Length=5185 Score = 116 bits (128), Expect = 6e-22 Identities = 132/176 (75%), Gaps = 1/176 (1%) Strand=Plus/Plus Query 16523 CGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACC 16582 || |||| || | || |||| ||||||| |||| |||| ||||| |||||| || Sbjct 2824 CGCGTCT-TGTAGTGATCTACGAAGAGACCCGTGGTGTTCTGAAGTCCTTCCTTGAGGGT 2882 Query 16583 GTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATG 16642 || |||| |||||| || ||||||||||||||| || || ||||| ||||| ||| | Sbjct 2883 GTCATCCGTGATGCCGTCACCTATACCGAGCACGCCAAGCGCAAGACCGTCACATCCCTC 2942 Query 16643 GATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTA 16698 || |||| || || ||||| | |||||||||| |||| ||||| ||| |||| Sbjct 2943 GACGTCGTTTACGCTTTGAAGAGACAAGGCCGTACCCTTTACGGTTTCGGAGGTTA 2998 Score = 95.1 bits (104), Expect = 2e-15 Identities = 79/94 (84%), Gaps = 2/94 (2%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCG-CAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||||||||| |||| | | |||| ||||||||||| ||||| ||||| ||||| Sbjct 2635 GCCAAGCGTCATCGTAAGAT-TTTGAGAGACAACATCCAAGGTATCACAAAGCCTGCTAT 2693 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGT 16525 | | ||||| |||||||||||||| ||||||||| Sbjct 2694 CAGACGTCTCGCTCGTCGTGGTGGTGTCAAGCGT 2727 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79064432206461