Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rutstroemia_20sydowiana_20[genbank_20GCA_5F000812895.1_202014-12-31]
11,777 sequences; 51,994,176 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq2490 118 2e-22
seq11200 116 6e-22
>seq2490
Length=11173
Score = 118 bits (130), Expect = 2e-22
Identities = 87/99 (88%), Gaps = 2/99 (2%)
Strand=Plus/Plus
Query 16433 GCTAAGCGTCATCGC-AGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||||||||||||||| |||| |||||| || ||||||||||| ||||| ||||| |||||
Sbjct 9927 GCTAAGCGTCATCGCAAGAT-TCTTCGCGACAACATCCAAGGTATCACAAAGCCTGCTAT 9985
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTC 16530
| | ||||| |||||||||||||| ||||||||| ||||
Sbjct 9986 CAGACGTCTCGCTCGTCGTGGTGGTGTCAAGCGTATCTC 10024
>seq11200
Length=5185
Score = 116 bits (128), Expect = 6e-22
Identities = 132/176 (75%), Gaps = 1/176 (1%)
Strand=Plus/Plus
Query 16523 CGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACC 16582
|| |||| || | || |||| ||||||| |||| |||| ||||| |||||| ||
Sbjct 2824 CGCGTCT-TGTAGTGATCTACGAAGAGACCCGTGGTGTTCTGAAGTCCTTCCTTGAGGGT 2882
Query 16583 GTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATG 16642
|| |||| |||||| || ||||||||||||||| || || ||||| ||||| ||| |
Sbjct 2883 GTCATCCGTGATGCCGTCACCTATACCGAGCACGCCAAGCGCAAGACCGTCACATCCCTC 2942
Query 16643 GATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTA 16698
|| |||| || || ||||| | |||||||||| |||| ||||| ||| ||||
Sbjct 2943 GACGTCGTTTACGCTTTGAAGAGACAAGGCCGTACCCTTTACGGTTTCGGAGGTTA 2998
Score = 95.1 bits (104), Expect = 2e-15
Identities = 79/94 (84%), Gaps = 2/94 (2%)
Strand=Plus/Plus
Query 16433 GCTAAGCGTCATCG-CAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
|| ||||||||||| |||| | | |||| ||||||||||| ||||| ||||| |||||
Sbjct 2635 GCCAAGCGTCATCGTAAGAT-TTTGAGAGACAACATCCAAGGTATCACAAAGCCTGCTAT 2693
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGT 16525
| | ||||| |||||||||||||| |||||||||
Sbjct 2694 CAGACGTCTCGCTCGTCGTGGTGGTGTCAAGCGT 2727
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 79064432206461
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |