Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rutstroemia_20sydowiana_20[genbank_20GCA_5F000812895.1_202014-12-31]
11,777 sequences; 51,994,176 total letters
Query= NC_006998.1
Length=194711
Score E
Sequences producing significant alignments: (Bits) Value
seq10763 392 4e-104
seq10338 147 3e-30
>seq10763
Length=10051
Score = 392 bits (434), Expect = 4e-104
Identities = 1329/2059 (65%), Gaps = 37/2059 (2%)
Strand=Plus/Minus
Query 61995 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 62054
||||||||||| || || || || | | ||||| |||||||||||||| || || |||
Sbjct 6161 GTGAATTGAATTGGTGCCGAAGCAGCCATAGTACGGAGATAGTACATTCCAGTCTTGAGA 6102
Query 62055 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 62114
|| | ||||||| |||||||| || | ||| | || || ||
Sbjct 6101 CCCAATTTCCATCCAGCGAAATGCATGGAAGTGATCTTGCCCATTGTAGGGTCCTTCATG 6042
Query 62115 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 62174
|| || ||||| |||||| |||||| ||||| || || | |||||| ||||||| |
Sbjct 6041 TGAATGTTCATCGATTGAGATTGATCAATGAAAGCACCACGGTCTGCGGCCATTTGAACA 5982
Query 62175 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 62234
|| | ||| | |||||||||| || || || | ||||| || |||||| |
Sbjct 5981 ATGTTTCGTTGAGAGATTTCCCAAACGGTCTTGTAGAGAGCTTTAATCTCGGCTGGAATG 5922
Query 62235 TTTG---TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTC 62291
|| | |||| |||||||| |||||||| || || || | |||||| || | |||| |
Sbjct 5921 TTGGGAATATTTTGAATGGAACCACCATCAGCGATGATACGATTCTTCATGTTATCAGAC 5862
Query 62292 CATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCA 62351
|| | | | ||| ||| | |||| || || ||||| ||||| || || ||
Sbjct 5861 CAAAGTCCCATGTCGACCAAATCCTTAAGAAGCCATGGGTTAACGACTTGGAACTCACCG 5802
Query 62352 GACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCC 62411
| ||| || | || | |||||| || || || || || | | ||||| ||
Sbjct 5801 GCCAACACACGGCGTGAGTAAATGTTGGAAGTGTATGGCTCGAAACATTCATTGAAACCG 5742
Query 62412 AAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCG 62471
| |||||||| || ||||| |||||||| || || | |||||||| | | |||
Sbjct 5741 AGAATTTGAGATGTGCTGGCAGTTGGCATAGGAGCAACAAGCAAACTATTCCGGATACC- 5683
Query 62472 TATGTTC--TGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNN 62529
||||| |||| | || |||| ||||||| ||||||||||| || |||
Sbjct 5682 -ATGTTGCTTGATAGATTGCTTGAGAGAATCCCAATCCCAAAGATCCGTAGGAGTAACAC 5624
Query 62530 NNNNNNNNNNNNNTTGTAGAATACCGTT----ACTGGCGTACGATCCTACATATGTATCG 62585
||| || ||| || ||||| | ||||| |||||| |||
Sbjct 5623 CCCACATATCATATTGAAGCTCACCCTTGGAGACTGGAG----ATCCTTCATATGACTCG 5568
Query 62586 TATGGTCCTTCCTTCTCAGCTAGTTCA-CAACTCGCCTCTAATGCACCGTAATAAATGGT 62644
||||| ||| | || |||| | | || | || || ||||||| || |||||
Sbjct 5567 TATGGGCCTAATTCCTTGGCTATCTGAACAGATGAAGTCAAA-GCACCGTGGTAGATGGT 5509
Query 62645 TTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAG 62704
|| ||||| | | || |||| | ||||| | ||| ||||| ||| ||||
Sbjct 5508 CTCAAAGATTTGGATGTTGAGATGCTTCGCTTCGGGTGAATCGAATGG-TAAACGGAGAG 5450
Query 62705 AATA-AACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAG 62763
| || || || || | ||||||||||||| | | ||||||| ||| | |||
Sbjct 5449 CCAAGAAGGCATCAGCAAGACCTTGAACACCAACAGCAATAGGTCGATGACGGAAATTGC 5390
Query 62764 AGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGA 62823
|| |||||| | ||||| ||||| ||||| ||||| || || | |||||||
Sbjct 5389 TTCTTCTGGCTTCTTCGACGGGATAGTAATTGATATCGATAATCTTGTTCAAGTTTCTGA 5330
Query 62824 CAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA-------TCGCCCATCTATT 62876
||| |||| || || || | || || | |||||| | ||| |||| | |
Sbjct 5329 CAACAACTTGAACGACCTCGTGAAGCTTTTGGAAATCATAAGTTCCCTCGGCCATGT-TG 5271
Query 62877 ACAAACATGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA 62936
||||| | | |||| ||| |||| |||||| || ||||||| || | |
Sbjct 5270 ACAAAGGTTGGGAGAGCAATAGAAGCCAAATTACAGCAAGCAACCTCATCAGGTGCAGAG 5211
Query 62937 TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTA 62996
|||| | || || ||||| | || | ||| || || | ||| | ||||||
Sbjct 5210 TATTCGACGATTTCCGTGCACAAGTTGGAGCTGCGGATTGTGCCGAGATTCTTTTGATTG 5151
Query 62997 CTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGAT 63056
||||||||||| || ||||| || ||||| ||||| || | || || ||| |||| |
Sbjct 5150 CTCTTTTTGTTGCAAGCATCTTTGTAAAGCATGAAAGGGTTTCCTGTCTCAGTCTGTGCC 5091
Query 63057 TCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTT---GTATCTCCTTTCT 63113
|| | || | | ||| | | ||||||| || || || | | | | || |
Sbjct 5090 TCGAGGATAGAATACCAAAGCTTTTGAGCCTTGAT---AGTCTTACGGCCTTTACCTTGT 5034
Query 63114 CTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGA 63173
| ||||| ||| | ||| ||||| || || | |||| |||| ||||||
Sbjct 5033 TTCTCGTAACCCTCATAAAGAGCTTCAAACTCATCACCATAGACATCAGCCAAGCCAGGA 4974
Query 63174 CATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGA 63233
||||| | || ||||| | | ||| ||||||| | | || || ||||| ||||||
Sbjct 4973 CATTCGTTGGGGCACATGAGTGTCCAATCTCCGTTCTTTTCAACACGCTTCATGAAGAGA 4914
Query 63234 TCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTC 63293
|| |||||||| || || ||| || || | | || | |||||| ||||| ||||
Sbjct 4913 TCTGGAATCCAGAGGGCATAAAAGAGGTCGCGTGCTCGAACTTCCTCCTTTCCATGATTC 4854
Query 63294 TTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATA 63353
||| ||||| | ||| | | | ||| | |||||| ||||| | ||| ||||| |
Sbjct 4853 TTTCGGAGATCCAAAAACTCAAAGACATCCGCATGCCATGGTTCAAGGTAGATGGCGAAT 4794
Query 63354 ACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTC 63413
| ||||| || ||||| || || ||||| | ||||||||||| || || ||||||
Sbjct 4793 GCACCAGGGCGCTTGTTACCACCTTGATCGACATATCTAGCGGTATTGTTGAAAACTCGA 4734
Query 63414 AACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCA 63473
| ||| |||| |||||||| || | ||||| || || | || || ||| | |||
Sbjct 4733 AGCATAGGAACGATACCGTTAGAATTTCCATTTGTGCCAGCAATGTATGCACCAGTAGCA 4674
Query 63474 CGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGT 63533
||||| | || ||||| || || || || | ||||| || | || ||
Sbjct 4673 CGAATTCTGTGGATGTTGAGACCAATACCTCCAGCATTCTTAGAAATCATGGCACAAATC 4614
Query 63534 TTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTA 63593
|| || || ||||| || || || || ||||| || |||||| || || || || |
Sbjct 4613 TTCAAAGTATCATAAATTCCATCAATACTATCCTCCTTCATGTCAATGAGGAAGCATGAA 4554
Query 63594 GACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCAT 63653
|| | |||| | || ||||| || | || ||||||||||| ||||| ||
Sbjct 4553 GAAAGTTGGGCTTGTGGTGTACCCGCGGAGAAGAGTGTTGGAGAAGCGTGTGTAAAGTAT 4494
Query 63654 TTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATC-CCATTGATGAATTCC 63712
|| | || | || ||||| || ||||| || || ||||| || | ||||| ||
Sbjct 4493 TTGTTGGACATTAAGTTGTAGGTTTCAATGGCGCTCTCGATATCATCACCG-TGAATACC 4435
Query 63713 TACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAA 63772
|| || |||||||| | ||| || || || | |||| | | || | | |
Sbjct 4434 AACGGCAACACGCATAATCATTTGTTGTGGACGTTCAGCAACTTTTCCATCGAGGCGGAG 4375
Query 63773 CAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTA 63832
| ||| ||| | || | ||| || || || || || | ||| |||||||| |||||
Sbjct 4374 GAGGTATGATCTCTCAAGAGTCTTGAATCCGAAGTATTGGTAGTTGAAGTCTCGATCGTA 4315
Query 63833 AATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTATATCCATGGTGATACTTG- 63891
|| ||| | ||||| |||| ||| || | | |||| | || ||| | ||||
Sbjct 4314 AACGATAGCAGAGTTAAGTTCTGCCTCATGTCTCATAAC-ACATTCATATGTTTCCTTGC 4256
Query 63892 AAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCA 63951
||| || ||||| | | | |||||||| | || |||| | ||| || || |
Sbjct 4255 TAATCATGGGAGATTTTGTACCATTTTTGGTGTTCGTGTAGTGGTATAGGTCACTGATGA 4196
Query 63952 CTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTA 64011
| | ||| |||| || |||| |||||| ||||| || || || || | || ||||
Sbjct 4195 CATGCGAGAATTGTTTCTTGGTTTGCTTGTGGAGATTGGAAACTGCAATACGAGCAGCTA 4136
Query 64012 GAATGGCATAATCCGGATG 64030
||||||||||| |||||
Sbjct 4135 AGATGGCATAATCGGGATG 4117
>seq10338
Length=29807
Score = 147 bits (162), Expect = 3e-30
Identities = 348/525 (66%), Gaps = 3/525 (1%)
Strand=Plus/Minus
Query 33000 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTC 33059
|||||| || || ||||| ||| | ||||| || ||||| || || || || || |
Sbjct 13448 CATAACACCAGCCTTCTGGTAATCAGCAACACGCTTCTCGAAGAAGTTGGTCTTGCCAGC 13389
Query 33060 CAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCC 33119
| || || ||||||||||| || || || ||||| | |||| |||| | ||
Sbjct 13388 GAGAGAAATGTTTTCCATGAAGTCGAATGGGTTGGTGGAACGGTAAACCTTTTCATTACC 13329
Query 33120 CAATTCAGAAATCAATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATT 33179
| || || | | || |||||||| || || ||| |||||||| || | ||
Sbjct 13328 AAGGGCAAGAAGAAGACGGTCTGCGACGAACTCAATGTATTGTTTCATCAGATCCGAGTT 13269
Query 33180 CATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGC 33239
||| || | || | ||||||||| | || | ||||| || ||||| | || ||
Sbjct 13268 CATGCCAAGGAGAGCACATGGAAGAGCTTCGGTCAAGAATTCCTGCTCAATTGTAACAGC 13209
Query 33240 ATCTGTTATAATAGATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACAT 33299
||||| || | | ||||| || || ||| || ||||| || || || |
Sbjct 13208 CTCTGTGATGACATCCTGAACGGCTTGTTTACTTGGGCGATGCTTCAAGTGCGAGAAGAG 13149
Query 33300 CAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGT 33359
| || ||||| ||| || ||||||||||| | || || |||||||| || ||
Sbjct 13148 AAGGCAGGCGAAGTCGGTATGAAGACCCTCGTCACGGGAGATGAGCTCGTTGGAGAAAGT 13089
Query 33360 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAA 33419
|| |||| ||| | |||||||| || ||||| || || || |||||||| ||| ||
Sbjct 13088 AAGACCGGCCATCAAACCACGCTTCTTGAGCCAGAAGATAGAGGCGAATGAACCACTGAA 13029
Query 33420 GAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCGCTGTC 33476
|||||| ||||| || ||||| || || | || | | || | | | ||||
Sbjct 13028 GAAGATACCTTCAACAGCAGCGAATGCGACGAGACGTTGAGCAAATGTAGATTCTTTGTC 12969
Query 33477 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGG 33521
|| ||||| | |||||||||||||||||| || | ||||||
Sbjct 12968 TTGGATCCATCTAACAGCCCAATCGGCCTTCTTCTTAATACAAGG 12924
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 622855494385320
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