Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20sydowiana_20[genbank_20GCA_5F000812895.1_202014-12-31] 11,777 sequences; 51,994,176 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq10763 392 4e-104 seq10338 147 3e-30 >seq10763 Length=10051 Score = 392 bits (434), Expect = 4e-104 Identities = 1329/2059 (65%), Gaps = 37/2059 (2%) Strand=Plus/Minus Query 61995 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 62054 ||||||||||| || || || || | | ||||| |||||||||||||| || || ||| Sbjct 6161 GTGAATTGAATTGGTGCCGAAGCAGCCATAGTACGGAGATAGTACATTCCAGTCTTGAGA 6102 Query 62055 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 62114 || | ||||||| |||||||| || | ||| | || || || Sbjct 6101 CCCAATTTCCATCCAGCGAAATGCATGGAAGTGATCTTGCCCATTGTAGGGTCCTTCATG 6042 Query 62115 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 62174 || || ||||| |||||| |||||| ||||| || || | |||||| ||||||| | Sbjct 6041 TGAATGTTCATCGATTGAGATTGATCAATGAAAGCACCACGGTCTGCGGCCATTTGAACA 5982 Query 62175 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 62234 || | ||| | |||||||||| || || || | ||||| || |||||| | Sbjct 5981 ATGTTTCGTTGAGAGATTTCCCAAACGGTCTTGTAGAGAGCTTTAATCTCGGCTGGAATG 5922 Query 62235 TTTG---TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTC 62291 || | |||| |||||||| |||||||| || || || | |||||| || | |||| | Sbjct 5921 TTGGGAATATTTTGAATGGAACCACCATCAGCGATGATACGATTCTTCATGTTATCAGAC 5862 Query 62292 CATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCA 62351 || | | | ||| ||| | |||| || || ||||| ||||| || || || Sbjct 5861 CAAAGTCCCATGTCGACCAAATCCTTAAGAAGCCATGGGTTAACGACTTGGAACTCACCG 5802 Query 62352 GACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCC 62411 | ||| || | || | |||||| || || || || || | | ||||| || Sbjct 5801 GCCAACACACGGCGTGAGTAAATGTTGGAAGTGTATGGCTCGAAACATTCATTGAAACCG 5742 Query 62412 AAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCG 62471 | |||||||| || ||||| |||||||| || || | |||||||| | | ||| Sbjct 5741 AGAATTTGAGATGTGCTGGCAGTTGGCATAGGAGCAACAAGCAAACTATTCCGGATACC- 5683 Query 62472 TATGTTC--TGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNN 62529 ||||| |||| | || |||| ||||||| ||||||||||| || ||| Sbjct 5682 -ATGTTGCTTGATAGATTGCTTGAGAGAATCCCAATCCCAAAGATCCGTAGGAGTAACAC 5624 Query 62530 NNNNNNNNNNNNNTTGTAGAATACCGTT----ACTGGCGTACGATCCTACATATGTATCG 62585 ||| || ||| || ||||| | ||||| |||||| ||| Sbjct 5623 CCCACATATCATATTGAAGCTCACCCTTGGAGACTGGAG----ATCCTTCATATGACTCG 5568 Query 62586 TATGGTCCTTCCTTCTCAGCTAGTTCA-CAACTCGCCTCTAATGCACCGTAATAAATGGT 62644 ||||| ||| | || |||| | | || | || || ||||||| || ||||| Sbjct 5567 TATGGGCCTAATTCCTTGGCTATCTGAACAGATGAAGTCAAA-GCACCGTGGTAGATGGT 5509 Query 62645 TTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAG 62704 || ||||| | | || |||| | ||||| | ||| ||||| ||| |||| Sbjct 5508 CTCAAAGATTTGGATGTTGAGATGCTTCGCTTCGGGTGAATCGAATGG-TAAACGGAGAG 5450 Query 62705 AATA-AACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAG 62763 | || || || || | ||||||||||||| | | ||||||| ||| | ||| Sbjct 5449 CCAAGAAGGCATCAGCAAGACCTTGAACACCAACAGCAATAGGTCGATGACGGAAATTGC 5390 Query 62764 AGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGA 62823 || |||||| | ||||| ||||| ||||| ||||| || || | ||||||| Sbjct 5389 TTCTTCTGGCTTCTTCGACGGGATAGTAATTGATATCGATAATCTTGTTCAAGTTTCTGA 5330 Query 62824 CAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA-------TCGCCCATCTATT 62876 ||| |||| || || || | || || | |||||| | ||| |||| | | Sbjct 5329 CAACAACTTGAACGACCTCGTGAAGCTTTTGGAAATCATAAGTTCCCTCGGCCATGT-TG 5271 Query 62877 ACAAACATGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA 62936 ||||| | | |||| ||| |||| |||||| || ||||||| || | | Sbjct 5270 ACAAAGGTTGGGAGAGCAATAGAAGCCAAATTACAGCAAGCAACCTCATCAGGTGCAGAG 5211 Query 62937 TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTA 62996 |||| | || || ||||| | || | ||| || || | ||| | |||||| Sbjct 5210 TATTCGACGATTTCCGTGCACAAGTTGGAGCTGCGGATTGTGCCGAGATTCTTTTGATTG 5151 Query 62997 CTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGAT 63056 ||||||||||| || ||||| || ||||| ||||| || | || || ||| |||| | Sbjct 5150 CTCTTTTTGTTGCAAGCATCTTTGTAAAGCATGAAAGGGTTTCCTGTCTCAGTCTGTGCC 5091 Query 63057 TCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTT---GTATCTCCTTTCT 63113 || | || | | ||| | | ||||||| || || || | | | | || | Sbjct 5090 TCGAGGATAGAATACCAAAGCTTTTGAGCCTTGAT---AGTCTTACGGCCTTTACCTTGT 5034 Query 63114 CTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGA 63173 | ||||| ||| | ||| ||||| || || | |||| |||| |||||| Sbjct 5033 TTCTCGTAACCCTCATAAAGAGCTTCAAACTCATCACCATAGACATCAGCCAAGCCAGGA 4974 Query 63174 CATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGA 63233 ||||| | || ||||| | | ||| ||||||| | | || || ||||| |||||| Sbjct 4973 CATTCGTTGGGGCACATGAGTGTCCAATCTCCGTTCTTTTCAACACGCTTCATGAAGAGA 4914 Query 63234 TCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTC 63293 || |||||||| || || ||| || || | | || | |||||| ||||| |||| Sbjct 4913 TCTGGAATCCAGAGGGCATAAAAGAGGTCGCGTGCTCGAACTTCCTCCTTTCCATGATTC 4854 Query 63294 TTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATA 63353 ||| ||||| | ||| | | | ||| | |||||| ||||| | ||| ||||| | Sbjct 4853 TTTCGGAGATCCAAAAACTCAAAGACATCCGCATGCCATGGTTCAAGGTAGATGGCGAAT 4794 Query 63354 ACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTC 63413 | ||||| || ||||| || || ||||| | ||||||||||| || || |||||| Sbjct 4793 GCACCAGGGCGCTTGTTACCACCTTGATCGACATATCTAGCGGTATTGTTGAAAACTCGA 4734 Query 63414 AACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCA 63473 | ||| |||| |||||||| || | ||||| || || | || || ||| | ||| Sbjct 4733 AGCATAGGAACGATACCGTTAGAATTTCCATTTGTGCCAGCAATGTATGCACCAGTAGCA 4674 Query 63474 CGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGT 63533 ||||| | || ||||| || || || || | ||||| || | || || Sbjct 4673 CGAATTCTGTGGATGTTGAGACCAATACCTCCAGCATTCTTAGAAATCATGGCACAAATC 4614 Query 63534 TTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTA 63593 || || || ||||| || || || || ||||| || |||||| || || || || | Sbjct 4613 TTCAAAGTATCATAAATTCCATCAATACTATCCTCCTTCATGTCAATGAGGAAGCATGAA 4554 Query 63594 GACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCAT 63653 || | |||| | || ||||| || | || ||||||||||| ||||| || Sbjct 4553 GAAAGTTGGGCTTGTGGTGTACCCGCGGAGAAGAGTGTTGGAGAAGCGTGTGTAAAGTAT 4494 Query 63654 TTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATC-CCATTGATGAATTCC 63712 || | || | || ||||| || ||||| || || ||||| || | ||||| || Sbjct 4493 TTGTTGGACATTAAGTTGTAGGTTTCAATGGCGCTCTCGATATCATCACCG-TGAATACC 4435 Query 63713 TACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAA 63772 || || |||||||| | ||| || || || | |||| | | || | | | Sbjct 4434 AACGGCAACACGCATAATCATTTGTTGTGGACGTTCAGCAACTTTTCCATCGAGGCGGAG 4375 Query 63773 CAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTA 63832 | ||| ||| | || | ||| || || || || || | ||| |||||||| ||||| Sbjct 4374 GAGGTATGATCTCTCAAGAGTCTTGAATCCGAAGTATTGGTAGTTGAAGTCTCGATCGTA 4315 Query 63833 AATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTATATCCATGGTGATACTTG- 63891 || ||| | ||||| |||| ||| || | | |||| | || ||| | |||| Sbjct 4314 AACGATAGCAGAGTTAAGTTCTGCCTCATGTCTCATAAC-ACATTCATATGTTTCCTTGC 4256 Query 63892 AAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCA 63951 ||| || ||||| | | | |||||||| | || |||| | ||| || || | Sbjct 4255 TAATCATGGGAGATTTTGTACCATTTTTGGTGTTCGTGTAGTGGTATAGGTCACTGATGA 4196 Query 63952 CTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTA 64011 | | ||| |||| || |||| |||||| ||||| || || || || | || |||| Sbjct 4195 CATGCGAGAATTGTTTCTTGGTTTGCTTGTGGAGATTGGAAACTGCAATACGAGCAGCTA 4136 Query 64012 GAATGGCATAATCCGGATG 64030 ||||||||||| ||||| Sbjct 4135 AGATGGCATAATCGGGATG 4117 >seq10338 Length=29807 Score = 147 bits (162), Expect = 3e-30 Identities = 348/525 (66%), Gaps = 3/525 (1%) Strand=Plus/Minus Query 33000 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTC 33059 |||||| || || ||||| ||| | ||||| || ||||| || || || || || | Sbjct 13448 CATAACACCAGCCTTCTGGTAATCAGCAACACGCTTCTCGAAGAAGTTGGTCTTGCCAGC 13389 Query 33060 CAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCC 33119 | || || ||||||||||| || || || ||||| | |||| |||| | || Sbjct 13388 GAGAGAAATGTTTTCCATGAAGTCGAATGGGTTGGTGGAACGGTAAACCTTTTCATTACC 13329 Query 33120 CAATTCAGAAATCAATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATT 33179 | || || | | || |||||||| || || ||| |||||||| || | || Sbjct 13328 AAGGGCAAGAAGAAGACGGTCTGCGACGAACTCAATGTATTGTTTCATCAGATCCGAGTT 13269 Query 33180 CATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGC 33239 ||| || | || | ||||||||| | || | ||||| || ||||| | || || Sbjct 13268 CATGCCAAGGAGAGCACATGGAAGAGCTTCGGTCAAGAATTCCTGCTCAATTGTAACAGC 13209 Query 33240 ATCTGTTATAATAGATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACAT 33299 ||||| || | | ||||| || || ||| || ||||| || || || | Sbjct 13208 CTCTGTGATGACATCCTGAACGGCTTGTTTACTTGGGCGATGCTTCAAGTGCGAGAAGAG 13149 Query 33300 CAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGT 33359 | || ||||| ||| || ||||||||||| | || || |||||||| || || Sbjct 13148 AAGGCAGGCGAAGTCGGTATGAAGACCCTCGTCACGGGAGATGAGCTCGTTGGAGAAAGT 13089 Query 33360 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAA 33419 || |||| ||| | |||||||| || ||||| || || || |||||||| ||| || Sbjct 13088 AAGACCGGCCATCAAACCACGCTTCTTGAGCCAGAAGATAGAGGCGAATGAACCACTGAA 13029 Query 33420 GAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCGCTGTC 33476 |||||| ||||| || ||||| || || | || | | || | | | |||| Sbjct 13028 GAAGATACCTTCAACAGCAGCGAATGCGACGAGACGTTGAGCAAATGTAGATTCTTTGTC 12969 Query 33477 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGG 33521 || ||||| | |||||||||||||||||| || | |||||| Sbjct 12968 TTGGATCCATCTAACAGCCCAATCGGCCTTCTTCTTAATACAAGG 12924 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622855494385320